Validation of signature polarlipid fatty acid biomarkers for alkane-utilizing bacteria in soils and subsurface aquifer materials

Abstract Extractable cell membrane-derived polarlipid ester-linked fatty acids (PLFA) obtained from aerated soils gassed with methane or propane and from methane- and propane-oxidizing bacteria isolated from the soils were analyzed by capillary gas chromatography/mass spectrometry. Exposure of aerated soils to methane resulted in the formation of a high proportion of an unusual 18-carbon mono-unsaturated PLFA, 18:lw8c. High proportions of this fatty acid biomarker are found in monocultures from this soil grown in minimal media with methane. This PLFA has been previously established as associated with authentic type II methane-oxidizing bacteria. The microbiota in aerated soils exposed to hydrocarbons containing propane, formed a suite of PLFA characterized by high proportions of a 16-carbon mono-unsaturated acid, 16:lw6c, and an 18-carbon saturated fatty acid with an additional methyl branch at the 10 position, 10 Me 18:0. This PLFA pattern has been detected in several monocultures enriched from the soil with propane-amended minimal media. The correspondence of high proportions of these unusual mono-unsaturated PLFA in the isolated monocultures and in situ in the soils after stimulation with the appropriate hydrocarbon is a strong validation of the utility of these biomarkers in defining the community structure of the surface soil microbial community.     

Identification and characterization of a defective SSV1 genome integrated into a tRNA gene in the archaebacterium Sulfolobus sp. B12

Summary Within the chromosome of the archaebacterium Sulfolobus sp. B12, a 7.4 kb region was identified which displayed extensive sequence similarities to the 15.5 kb genetic element SSV1 carried by the same strain both as a circular form and as a site-specifically integrated copy. DNA sequence analysis indicated that this 7.4 kb region (designated SSV1^intB) represented an SSV1-like element distinguishable from the full-length integrated copy (designated SSV1^intA) by extensive deletions and point mutations. The physical organization of DNA sequences of SSV1^intB indicated that this element was integrated at the same attP site as previously identified for SSV1^intA. A comparison of the DNA sequences at the left attachment sites of SSV1^intA and SSV1^intB revealed that they both represented very similar putative arginine tRNA genes followed by a 10 by inverted repeat sequence. S1 nuclease mapping experiments indicated that these tRNA genes are transcribed. Offprint requests to: W. Zillig     

HSP12, a new small heat shock gene of Saccharomyces cerevisiae: Analysis of structure, regulation and function

Summary We have isolated a new small heat shock gene, HSP12, from Saccharomyces cerevisiae. It encodes a polypeptide of predicted Mr 12 kDa, with structural similarity to other small heat shock proteins. HSP12 gene expression is induced several hundred-fold by heat shock and on entry into stationary phase. HSP12 mRNA is undetectable during exponential growth in rich medium, but low levels are present when cells are grown in minimal medium. Analysis of HSP12 expression in mutants affected in cAMP-dependent protein phosphorylation suggests that the gene is regulated by cAMP as well as heat shock. A disruption of the HSP12 coding region results in the loss of an abundant 14.4 kDa protein present in heat shocked and stationary phase cells. It also leads to the induction of the heat shock response under conditions normally associated with low-level HSP12 expression. The HSP12 disruption has no observable effect on growth at various temperatures, nor on the ability to acquire thermotolerance.     

Ecophysiological aspects of rapid population growth in a novel migratory blackcap (Sylvia atricapilla) population: an experimental approach

Summary Blackcaps (Sylvia atricapilla) that breed in central Europe have usually migrated to Mediterranean or African wintering grounds. In the past several decades, a portion of this breeding population has started migrating to the British Isles to overwinter and this population has increased dramatically. Several factors, including higher annual survivorship (due to supplemental feeding and reduced migratiry distance), assortative mating, and enhanced reproductive success may be involved in this rapid population growth. As part of an intensive, long-term study of this population, we tested the hypothesis that the differences in photoperiod experienced by British-wintering versus Mediterranean-wintering blackcaps might lead to relatively early vernal (i.e., migratory and/or reproductive) physiological condition in members of the former group. We found that birds exposed to photoperiodic conditions that simulated migration to Britain to overwinter generally initiated vernal migratory activity earlier than birds held under conditions simulating migration to traditional wintering areas in central Spain. This difference, coupled with the shorter migratory distance to the British Isles, leads to significantly earlier estimated arrival dates for blackcaps that winter in Britain compared to central Spain. Bimodality in arrival times suggests that assortative mating on central European breeding grounds might occur between members of the different wintering populations. Males exposed to British-winter photoperiods showed significantly earlier testicular development than males kept under Spanish-winter photoperiods. Early arrival on the breeding grounds, coupled with accelerated reproductive condition, should lead to a relatively early reproductive effort, perhaps increasing average reproductive success. In general, these results support the hypothesis that differences in photoperiod on the wintering grounds may play an important role in the dynamic state of this population.     

Effects of fire and harvesting on nitrogen transformations and ionic mobility in soils of Eucalyptus regnans forests of south-eastern Australia

Summary Effects of fire and forest harvesting on inorganic-N in the soil, on net N-mineralization, and on the leaching of NO _inf3 ^sup- -N and metallic cations were measured in forests of Eucalyptus regnans following a severe wildfire in 1983. E. regnans regenerates profusely by seed after fire, and this study compared unburnt forest with forests burnt at varying intensities (surface fire and crown fire), and with logged and burnt forest (slash fire). Total inorganic-N in soil (0–5 cm) increased with increasing fire intensity to a maximum of 158 g g^-1 in the slash fire plot (compared with 51 g g^-1 in the unburnt forest) over the first 205 days after fire. Total inorganic-N returned to a concentration equal to that in the unburnt forest after 485 days at the slash fire plot, and after only 205 days at the surface fire plot. Studies of net mineralization in situ and of NO _inf3 ^sup- -N in soil solution support the hypothesis that inorganic-N was immobilized in all of the burnt forests; microbial immobilization after fire is identified as a key process in N-conservation, limiting the substrate available for nitrification and thereby limiting the loss of N from the system by leaching. The concentrations of NO _inf3 ^sup- -N and metallic cations in soil solution increased with increasing fire intensity. For the first 318 days after the fire, [NO _inf3 ^sup- -N] in soil solution at 10 cm averaged 0.6 g ml^-1 in the unburnt forest, 9.7 mg l^-1 in the surface fire plot, 26 mg l^-1 in the crown fire plot, and 70 mg l^-1 in the slash fire plot. The concentration of metallic cations in soil solution was significantly correlated with [NO _inf3 ^sup- -N], the observed order of mobility being Ca²⁺>Mg²⁺>K⁺>Na⁺. Processes which limit the production and persistence of NO _inf3 ^sup- -N in soil solution following disturbance will significantly reduce nutrient losses or redistribution.     

Seasonal variation of territory size with the Little Owl (Athene noctua)

Summary In a population of Little Owls (Athene noctua) at the Lower Rhine (FRG), the factors were studied that influence the size and shape of territories of this non-migrating, all-year territorial owl species. These studies were carried out between September 1984 and June 1987. The birds were individually marked with transmitter packages so that their locomotional movements could be monitored. Using a standard protable stimulus (a dummy with an attached loudspeaker) the territorial boundaries of 19 male Little Owls were surveilled during the different seasons of the year. Male Little Owls defended their territories in all seasons, but distinct seasonal changes of intraspecific aggressiveness and territory size were observed. The seasonal variations of territory size followed a common pattern in all studied Little Owls, in spite of individual differences in the size of the defended areas. The largest territories were defended in March/April during the courtship season . In May/June all male Little Owls reduced the size of their territories . This corresponds to the breeding and nestling period. The yearly minimum of territory size was reached in the summer months July and August when the fledglings were still fed in the parental territory. When the first-year birds started to disperse in autumn (September/October), the size of the defended areas of the adult tenants again increased . In winter (November to February), a further increase in territory size was observed for periods of warm weather . Male Little Owls, however, were less aggressive during winter than in the following courtship season. On cold winter days with a ground cover of snow territorial aggressiveness ceased. Pastures and meadows offered a continuous food supply almost throughout the year. In some seasons they were overproportionally represented in the territories of Little Owls compared to the general surroundings. In reaction to changing accessibility of food, the hunting ranges within the home ranges were shifted much faster than the boundaries of the defended territories. The significance of various factors contributing to the variability of territory size in Little Owls are discussed (e.g. availability of food, seasonal and individual differences in aggressiveness, experience in the occupied area, population density).     

Forests losing large quantities of nitrogen have elevated 15N:14N ratios

Summary Urea (U) and ammonium nitrate (AN) had been applied to a Scots pine (Pinus sylvestris L.) forest in northern Sweden for 18 consecutive years at four doses resulting in total N applications ranging from 0 to 1980 kg ha^–1. The ¹⁵N abundance ( ¹⁵N) of the grass Deschampsia flexuosa (L.) Trin. increased linearly (from –0.7 to 11.0) with application rate in the case of U. The response to AN was in the same direction but smaller. While others have shown that the initial response of nitrogen-limited systems to additions of N is a change of ¹⁵N abundance towards that of added N, this study shows that further and excessive additions leads to a retention of ¹⁵N. Monitoring ¹⁵N abundance over time in dose-response trials of this type thus opens new possibilities to estimate critical loads of N and the point of nitrogen saturation.     

Amino acids as determinants of host preference for the xylem feeding leafhopper,Homalodisca coagulata (Homoptera: Cicadellidae)

Summary Homalodisca coagulata is a highly polyphagous xylem feeder with distinct seasonal patterns in it's selection of host plants. These patterns were examined in relation to the amino acid content of the xylem for four common host species; Lagerstroemia indica, Baccharis halimifolia, Prunus persica, and Prunus salicina. Xylem fluid was collected from each host species at times when numbers of feeding leafhoppers were both low and high. In each case, concentrations of amino acids were greatest when numbers were high. Similarly, comparisons between host species at given times showed that concentrations of amino acids were positively correlated with host selection. In a second study, amino acids of xylem were manipulated by budding scions of a non-preferred host (P. persica) on rootstocks of preferred (P. salinica) and non-preferred (P. persica) hosts. Morphology and phenology of the budded trees were similar to that of the scion species yet the xylem composition of amino acids was primarily dependent on the rootstock. Concentrations of amino acids and the preference of leafhoppers were roughly two-fold greater for scions of the preferred than the non-preferred rootstock. In both studies, amides (glutamine plus asparagine) were the amino acids most highly correlated with host selection. These compounds are the predominant amino acids in xylem fluid, have high nitrogen to carbon ratios, and account for a high percentage of the caloric value in xylem fluid. Many of the less abundant amino acids were positively correlated with host preference, but the correlations were less consistent and correlation coefficients were generally lower.Florida Agricultural Experiment Station Journal Series No. 9672