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Cate B. Quinn Sophie Preckler-Quisquater Jocelyn R. Akins Patrick R. Cross Preston B. Alden Stevi L. Vanderzwan John A. Stephenson Pete J. Figura Gregory A. Green Tim L. Hiller Benjamin N. Sacks 《Heredity》2022,129(2):123
As anthropogenic disturbances continue to drive habitat loss and range contractions, the maintenance of evolutionary processes will increasingly require targeting measures to the population level, even for common and widespread species. Doing so requires detailed knowledge of population genetic structure, both to identify populations of conservation need and value, as well as to evaluate suitability of potential donor populations. We conducted a range-wide analysis of the genetic structure of red foxes in the contiguous western U.S., including a federally endangered distinct population segment of the Sierra Nevada subspecies, with the objectives of contextualizing field observations of relative scarcity in the Pacific mountains and increasing abundance in the cold desert basins of the Intermountain West. Using 31 autosomal microsatellites, along with mitochondrial and Y-chromosome markers, we found that populations of the Pacific mountains were isolated from one another and genetically depauperate (e.g., estimated Ne range = 3–9). In contrast, red foxes in the Intermountain regions showed relatively high connectivity and genetic diversity. Although most Intermountain red foxes carried indigenous western matrilines (78%) and patrilines (85%), the presence of nonindigenous haplotypes at lower elevations indicated admixture with fur-farm foxes and possibly expanding midcontinent populations as well. Our findings suggest that some Pacific mountain populations could likely benefit from increased connectivity (i.e., genetic rescue) but that nonnative admixture makes expanding populations in the Intermountain basins a non-ideal source. However, our results also suggest contact between Pacific mountain and Intermountain basin populations is likely to increase regardless, warranting consideration of risks and benefits of proactive measures to mitigate against unwanted effects of Intermountain gene flow.Subject terms: Conservation biology, Population genetics 相似文献
84.
George K. Todd Casey A. Boosalis Aaron A. Burzycki Michael Q. Steinman Lynda D. Hester Pete W. Shuster Randen L. Patterson 《PloS one》2013,8(4)
One of the goals in neuroscience is to obtain tractable laboratory cultures that closely recapitulate in vivo systems while still providing ease of use in the lab. Because neurons can exist in the body over a lifetime, long-term culture systems are necessary so as to closely mimic the physiological conditions under laboratory culture conditions. Ideally, such a neuronal organoid culture would contain multiple cell types, be highly differentiated, and have a high density of interconnected cells. However, before these types of cultures can be created, certain problems associated with long-term neuronal culturing must be addressed. We sought to develop a new protocol which may further prolong the duration and integrity of E18 rat hippocampal cultures. We have developed a protocol that allows for culturing of E18 hippocampal neurons at high densities for more than 120 days. These cultured hippocampal neurons are (i) well differentiated with high numbers of synapses, (ii) anchored securely to their substrate, (iii) have high levels of functional connectivity, and (iv) form dense multi-layered cellular networks. We propose that our culture methodology is likely to be effective for multiple neuronal subtypes–particularly those that can be grown in Neurobasal/B27 media. This methodology presents new avenues for long-term functional studies in neurons. 相似文献
85.
Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2O emissions 下载免费PDF全文
Fiona Ehrhardt Jean‐François Soussana Gianni Bellocchi Peter Grace Russel McAuliffe Sylvie Recous Renáta Sándor Pete Smith Val Snow Massimiliano de Antoni Migliorati Bruno Basso Arti Bhatia Lorenzo Brilli Jordi Doltra Christopher D. Dorich Luca Doro Nuala Fitton Sandro J. Giacomini Brian Grant Matthew T. Harrison Stephanie K. Jones Miko U. F. Kirschbaum Katja Klumpp Patricia Laville Joël Léonard Mark Liebig Mark Lieffering Raphaël Martin Raia S. Massad Elizabeth Meier Lutz Merbold Andrew D. Moore Vasileios Myrgiotis Paul Newton Elizabeth Pattey Susanne Rolinski Joanna Sharp Ward N. Smith Lianhai Wu Qing Zhang 《Global Change Biology》2018,24(2):e603-e616
Simulation models are extensively used to predict agricultural productivity and greenhouse gas emissions. However, the uncertainties of (reduced) model ensemble simulations have not been assessed systematically for variables affecting food security and climate change mitigation, within multi‐species agricultural contexts. We report an international model comparison and benchmarking exercise, showing the potential of multi‐model ensembles to predict productivity and nitrous oxide (N2O) emissions for wheat, maize, rice and temperate grasslands. Using a multi‐stage modelling protocol, from blind simulations (stage 1) to partial (stages 2–4) and full calibration (stage 5), 24 process‐based biogeochemical models were assessed individually or as an ensemble against long‐term experimental data from four temperate grassland and five arable crop rotation sites spanning four continents. Comparisons were performed by reference to the experimental uncertainties of observed yields and N2O emissions. Results showed that across sites and crop/grassland types, 23%–40% of the uncalibrated individual models were within two standard deviations (SD) of observed yields, while 42 (rice) to 96% (grasslands) of the models were within 1 SD of observed N2O emissions. At stage 1, ensembles formed by the three lowest prediction model errors predicted both yields and N2O emissions within experimental uncertainties for 44% and 33% of the crop and grassland growth cycles, respectively. Partial model calibration (stages 2–4) markedly reduced prediction errors of the full model ensemble E‐median for crop grain yields (from 36% at stage 1 down to 4% on average) and grassland productivity (from 44% to 27%) and to a lesser and more variable extent for N2O emissions. Yield‐scaled N2O emissions (N2O emissions divided by crop yields) were ranked accurately by three‐model ensembles across crop species and field sites. The potential of using process‐based model ensembles to predict jointly productivity and N2O emissions at field scale is discussed. 相似文献
86.
Phosphatase activity and nitrogen fixation reflect species differences,not nutrient trading or nutrient balance,across tropical rainforest trees 下载免费PDF全文
Sarah A. Batterman Jefferson S. Hall Benjamin L. Turner Lars O. Hedin J. Kimiko LaHaela Walter Pete Sheldon Michiel van Breugel 《Ecology letters》2018,21(10):1486-1495
A fundamental biogeochemical paradox is that nitrogen‐rich tropical forests contain abundant nitrogen‐fixing trees, which support a globally significant tropical carbon sink. One explanation for this pattern holds that nitrogen‐fixing trees can overcome phosphorus limitation in tropical forests by synthesizing phosphatase enzymes to acquire soil organic phosphorus, but empirical evidence remains scarce. We evaluated whether nitrogen fixation and phosphatase activity are linked across 97 trees from seven species, and tested two hypotheses for explaining investment in nutrient strategies: trading nitrogen‐for‐phosphorus or balancing nutrient demand. Both strategies varied across species but were not explained by nitrogen‐for‐phosphorus trading or nutrient balance. This indicates that (1) studies of these nutrient strategies require broad sampling within and across species, (2) factors other than nutrient trading must be invoked to resolve the paradox of tropical nitrogen fixation, and (3) nitrogen‐fixing trees cannot provide a positive nitrogen‐phosphorus‐carbon feedback to alleviate nutrient limitation of the tropical carbon sink. 相似文献
87.
Taylor G. Donaldson Adalberto A. Pèrez de León Andrew I. Li Ivan Castro-Arellano Edward Wozniak William K. Boyle Reid Hargrove Hannah K. Wilder Hee J. Kim Pete D. Teel Job E. Lopez 《PLoS neglected tropical diseases》2016,10(2)
BackgroundOrnithodoros turicata is a veterinary and medically important argasid tick that is recognized as a vector of the relapsing fever spirochete Borrelia turicatae and African swine fever virus. Historic collections of O. turicata have been recorded from Latin America to the southern United States. However, the geographic distribution of this vector is poorly understood in relation to environmental variables, their hosts, and consequently the pathogens they transmit.MethodologyLocalities of O. turicata were generated by performing literature searches, evaluating records from the United States National Tick Collection and the Symbiota Collections of Arthropods Network, and by conducting field studies. Maximum entropy species distribution modeling (Maxent) was used to predict the current distribution of O. turicata. Vertebrate host diversity and GIS analyses of their distributions were used to ascertain the area of shared occupancy of both the hosts and vector.
Conclusions and Significance
Our results predicted previously unrecognized regions of the United States with habitat that may maintain O. turicata and could guide future surveillance efforts for a tick capable of transmitting high–consequence pathogens to human and animal populations. 相似文献88.
Understanding decisions is a fundamental aim of behavioural ecology, psychology and economics. The regularity axiom of utility theory holds that a preference between options should be maintained when other options are made available. Empirical studies have shown that animals violate regularity but this has not been understood from a theoretical perspective, such decisions have therefore been labelled as irrational. Here, I use models of state-dependent behaviour to demonstrate that choices can violate regularity even when behavioural strategies are optimal. I also show that the range of conditions over which regularity should be violated can be larger when options do not always persist into the future. Consequently, utility theory—based on axioms, including transitivity, regularity and the independence of irrelevant alternatives—is undermined, because even alternatives that are never chosen by an animal (in its current state) can be relevant to a decision. 相似文献
89.
The application of a linear regression approach to hominid data shows that there is more regularity in hominid cranial capacity over time than has been supposed. Two outcomes of this analysis are: (1) the possibility that the South African Australopithecus africanus sites are older than the presently accepted estimates of perhaps around 2·5 million years and (2) the suggestion that the Ngandong (Solo) cranial material is also considerably older than generally assumed; probably, in excess of approximately 250,000 years B.P. 相似文献
90.
R Noiva M J Pete D R Babin 《Comparative biochemistry and physiology. B, Comparative biochemistry》1987,88(1):341-347
1. Hemopexin was isolated from bovine serum of a single animal in a yield of 0.5 mg/ml. 2. Bovine hemopexin was found to exist in two isoforms of mol. wt 68,000 and 65,000. 3. Treatment of hemopexin with glycopeptidase F yields a single band corresponding to a mol. wt of 51,000. 4. The protein binds heme on an equimolar ratio and shows a single component in reverse-phase high performance liquid chromatography. 5. The amino acid composition of bovine hemopexin compares with that of hemopexin isolated form other animals. 相似文献