A field cage for Old World primates designed to encourage natural behavior

The construction of an all-weather field cage housing Old World primates (Macaca fuscata) is described. The 40 × 40 foot enclosure includes some simulated aspects of the animals' natural environment thereby encouraging natural behavior. The animals are observed from a tower equiped with one-way glass to eliminate the animals' being aware of observers. By using prefabricated construction and adaptations of standard supplies and equipment, the cage and tower were constructed at a cost of $7,000.The construction and design of the field-cage were supported by many persons whose suggestions are present in the final design. The original design was produced by the first author during a conference on Primate Outdoor Housing arranged at the Yerkes Primate Center in October, 1969.Walter Geiger andJohn Bell were responsible for suggesting and locating suitable materials and for overseeing the construction. As they came to understand the purpose of the project, the special types of problems involved, and the nature of the monkeys (who were housed temporarily near the construction site), the workmen assigned to the project provided us with many imaginative and useful suggestions (such as the idea of turning the walls inside-out). The project was very much a group project, and we would like to acknowledge especially the members of the university physical plant staff who contributed to the success of the project.Funds for the field-cage were provided, in part, from a NSF COSIP grant to Bucknell University.     

Survival of the exotic Chinese mystery snail (<Emphasis Type=Italic>Cipangopaludina chinensis malleata</Emphasis>) during air exposure and implications for overland dispersal by boats

The exotic Chinese mystery snail (Cipangopaludina chinensis malleata) has invaded lakes and rivers across North America and is particularly widespread in northern Wisconsin. Although deliberate introductions and aquarium releases have likely been important, recreational boats may speed the spread of this snail into lakes. Prior research indicated boater access to be a significant predictor of invasion by C. chinensis and other invasive species in Wisconsin. To mimic the process of boater transport between lakes, I examined the tolerance of juvenile C. chinensis to air exposure in a series of field and laboratory experiments. Field experiments under mesic conditions indicated that this snail can survive exposure to air for at least 4 weeks. Larger juveniles were more resistant than smaller juveniles, an effect that was also observed in the laboratory during short-term (3–14 days) experiments. Tolerance of small juveniles to air exposure appeared to be unaffected by temperature, but was affected by humidity, with higher survival at 64% than 34% relative humidity (RH). Results from the current study suggest that C. chinensis is highly resistant to air exposure and could be readily transported by boats moving between lakes, particularly in cool mesic environments. Since juvenile C. chinensis are common around the roots of emergent macrophytes, hitchhiking with boats should be particularly common with boats or trailers infested with aquatic plants.     

Viral ecology and the maintenance of novel host use

Viruses can occasionally emerge by infecting new host species. However, the early phases of emergence can hinge upon ecological sustainability of the virus population, which is a product of both within-host population growth and between-host transmission. Insufficient growth or transmission can force virus extinction before the latter phases of emergence, where genetic adaptations that improve host use may occur. We examined the early phase of emergence by studying the population dynamics of RNA phages in replicated laboratory environments containing native and novel host bacteria. To predict the breadth of transmission rates allowing viral persistence on each species, we developed a simple model based on in vitro data for phage growth rate over a range of initial population densities on both hosts. Validation of these predictions using serial passage experiments revealed a range of transmission rates for which the native host was a source and the novel host was a sink. In this critical range of transmission rates, periodic exposure to the native host was sufficient for the maintenance of the viral population on the novel host. We argue that this effect should facilitate adaptation by the virus to utilize the novel host--often crucial in subsequent phases of emergence.     

Tolerance of embryos and hatchlings of the invasive apple snail Pomacea maculata to estuarine conditions

One of the most successful groups of invasive consumers worldwide is freshwater snails of the family Ampullariidae, including Pomacea maculata, yet little is known about snail survival and growth in the range of conditions found in estuarine ecosystems. Here, we provide an experimental assessment of P. maculata survivability in estuarine conditions, documenting: (1) egg susceptibility to tidal inundation (2) salinity tolerance of snails, and (3) salinity effects on hatchling growth. Results indicate that estuarine conditions will not limit apple snail colonization in oligohaline and mesohaline reaches of estuaries, with eggs remaining viable when exposed to periodic inundations typical of a tidal regime and modest, albeit reduced, growth and survival at moderate salinities (5 and 10 ppt). For this reason, rapid detection and eradication of P. maculata in estuarine areas is needed to avoid the invasion of snails in these vital, productive environments.     

Systematic in vivo RNAi analysis identifies IAPs as NEDD8-E3 ligases

The intimate relationship between mediators of the ubiquitin (Ub)-signaling system and human diseases has sparked profound interest in how Ub influences cell death and survival. While the consequence of Ub attachment is intensely studied, little is known with regards to the effects of other Ub-like proteins (UBLs), and deconjugating enzymes that remove the Ub or UBL adduct. Systematic in vivo RNAi analysis identified three NEDD8-specific isopeptidases that, when knocked down, suppress apoptosis. Consistent with the notion that attachment of NEDD8 prevents cell death, genetic ablation of deneddylase 1 (DEN1) suppresses apoptosis. Unexpectedly, we find that Drosophila and human inhibitor of apoptosis (IAP) proteins can function as E3 ligases of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Finally, we demonstrate that DEN1 reverses this effect by removing the NEDD8 modification. Altogether, our findings indicate that IAPs not only modulate cellular processes via ubiquitylation but also through attachment of NEDD8, thereby extending the complexity of IAP-mediated signaling.     

Genetic Evidence That Chain Length and Branch Point Distributions Are Linked Determinants of Starch Granule Formation in Arabidopsis

The major component of starch is the branched glucan amylopectin. Structural features of amylopectin, such as the branching pattern and the chain length distribution, are thought to be key factors that enable it to form semicrystalline starch granules. We varied both structural parameters by creating Arabidopsis (Arabidopsis thaliana) mutants lacking combinations of starch synthases (SSs) SS1, SS2, and SS3 (to vary chain lengths) and the debranching enzyme ISOAMYLASE1-ISOAMYLASE2 (ISA; to alter branching pattern). The isa mutant accumulates primarily phytoglycogen in leaf mesophyll cells, with only small amounts of starch in other cell types (epidermis and bundle sheath cells). This balance can be significantly shifted by mutating different SSs. Mutation of SS1 promoted starch synthesis, restoring granules in mesophyll cell plastids. Mutation of SS2 decreased starch synthesis, abolishing granules in epidermal and bundle sheath cells. Thus, the types of SSs present affect the crystallinity and thus the solubility of the glucans made, compensating for or compounding the effects of an aberrant branching pattern. Interestingly, ss2 mutant plants contained small amounts of phytoglycogen in addition to aberrant starch. Likewise, ss2ss3 plants contained phytoglycogen, but were almost devoid of glucan despite retaining other SS isoforms. Surprisingly, glucan production was restored in the ss2ss3isa triple mutants, indicating that SS activity in ss2ss3 per se is not limiting but that the isoamylase suppresses glucan accumulation. We conclude that loss of only SSs can cause phytoglycogen production. This is readily degraded by isoamylase and other enzymes so it does not accumulate and was previously unnoticed.Starch, the major storage carbohydrate in plants, is composed of two α-1,4- and α-1,6-linked glucan polymers: moderately branched amylopectin and predominantly linear amylose. Amylopectin, which constitutes approximately 80% of most starches, is synthesized by three enzyme activities. Starch synthases (SSs) transfer the glucosyl moiety of ADP-Glc to a glucan chain, forming a new α-1,4 glucosidic linkage, extending the linear chains. Branching enzymes (BEs) cleave some α-1,4 linkages and reattach chains of six Glc units or more via α-1,6 linkages, creating branch points. Debranching enzymes (DBEs) hydrolyze some of these branches, tailoring the structure of the polymer. However, the way in which the individual enzymes work together to create crystallization-competent amylopectin remains unclear.The coordinated actions of SSs, BEs, and DBEs are thought to produce a glucan with a tree-like architecture in which the branch points are nonrandomly positioned. According to models of amylopectin, clusters of unbranched chain segments are formed. Within these clusters, adjacent chains form double helices, which align in parallel giving rise to crystalline lamellae. These alternate with amorphous lamellae containing the branch points and chain segments that span the clusters (Zeeman et al., 2010). In the context of this amylopectin model, glucan chains can be categorized according to their length and connection to other chains. The A chains are external chains that do not carry other branches. The B chains carry one or more branches (either an A chain or another B chain) and have both external and internal segments. The B chains can span one or more clusters (e.g. a B₁ chain spans one cluster). The C chain is the single chain that has a reducing end (Manners, 1989). The A chains tend to be the shortest, having an average chain length (ACL) of 12 to 16, depending on the species (Hizukuri, 1986). Together with the B₁ chains, the A chains are thought to make up the crystalline clusters. Longer chains such as B₂ chains (ACL 20–24) or B₃ chains (ACL 42–48) are presumed to connect clusters (Hizukuri, 1986). Amylose is a distinct polymer synthesized within the amylopectin matrix by granule-bound SS (Tatge et al., 1999). Mutants lacking granule-bound SS also lack amylose but still make starch granules, showing that amylose synthesis is not required for this (Zeeman et al., 2010).The structural properties of amylopectin contrast with those of glycogen, the Glc polymer synthesized in organisms such as fungi, animals, and most bacteria. Glycogen also consists of α-1,4-linked Glc chains with α-1,6-linked branches, but differs in three major ways from amylopectin. First, its external branches are considerably shorter (6–8 Glc units compared with 12–16 in amylopectin). Second, the branch frequency (10%) is twice as high as in amylopectin. Third, its branch points are assumed to be distributed homogeneously, whereas branching in amylopectin is thought to be nonhomogeneous. These differences prevent the formation and parallel alignment of double helices in glycogen, rendering it soluble. Glycogen synthesis requires only a single glycogen synthase enzyme and a single glycogen BE, whereas several SS and BE isoforms are involved in amylopectin synthesis. In Arabidopsis (Arabidopsis thaliana), there are four SSs (SS1–SS4) and two BEs (BE2 and BE3; Li et al., 2003; Streb and Zeeman, 2012). In addition, Arabidopsis has three DBEs. ISOAMYLASE1-ISOAMYLASE2 (hereafter referred to simply as ISA), a heteromultimeric enzyme composed of the two subunits ISA1 and ISA2, is implicated in amylopectin synthesis (Delatte et al., 2005). The other two DBEs, ISA3 and LIMIT DEXTRINASE (LDA), are implicated in starch degradation (Delatte et al., 2006).Loss of specific SS isoforms has different effects on the starch amount, amylopectin chain length distribution (CLD), and starch granule morphology, suggesting distinct functions for each isoform. For example, amylopectin from SS1-deficient mutants of Arabidopsis (Delvallé et al., 2005; Szydlowski et al., 2011) and rice (Oryza sativa; Fujita et al., 2006) has fewer chains with a degree of polymerization (DP; i.e. chain length) between 8 and 12 and more chains with a DP between 17 and 20 compared with the wild-type starches. This is consistent with in vitro data for the maize (Zea mays; Commuri and Keeling, 2001) and rice SSI enzymes (Fujita et al., 2006), which preferentially elongate short chains of DP 6 or 7 up to a length of DP 10. This indicates that SSI functions to elongate the short chains created by BEs by a few Glc units (Commuri and Keeling, 2001; Delvallé et al., 2005). Comparable studies in SS2-deficient mutants reveal amylopectin with more chains with DP 6 to 11, but depletion in chains with DP 13 to 20 compared with the corresponding wild-type amylopectins. Thus, SS2 is suggested to elongate shorter chains (e.g. those made by SS1) to a length of between DP 13 and 20 (Edwards et al., 1999; Yamamori et al., 2000; Umemoto et al., 2002; Morell et al., 2003; Zhang et al., 2004, 2008). SS3 was proposed to be important for the generation of long, cluster-spanning chains (Jeon et al., 2010; Tetlow and Emes, 2011), as well as contributing to A chain and B₁ chain elongation (Edwards et al., 1999; Zhang et al., 2005, 2008). By contrast, SS4 appears to have a specialized role in initiating or coordinating granule formation (Roldán et al., 2007; Crumpton-Taylor et al., 2012, 2013). Arabidopsis ss4 mutants have just one round starch granule per chloroplast rather than five or more lenticular granules observed in the wild type.Partial loss of BE activity in maize (Stinard et al., 1993), rice (Mizuno et al., 1993), and potato (Solanum tuberosum; Schwall et al., 2000) leads to starches with high apparent amylose, most likely caused by the accumulation of less frequently branched amylopectin. A total lack of branching activity in Arabidopsis be2be3 mutants, however, abolishes starch production. Instead, maltose accumulates, suggesting that linear glucans are produced, but degraded by α- and β-amylases (Dumez et al., 2006).Loss of DBE of the ISA1 class causes a dramatic phenotype, with production of a soluble glucan (phytoglycogen) in place of starch. This has been observed in starch-synthesizing tissues of several species, including Chlamydomonas reinhardtii cells (Mouille et al., 1996), Arabidopsis leaves (Delatte et al., 2005; Wattebled et al., 2005), and the endosperms of maize (Zea Mays; James et al., 1995), rice (Oryza sativa; Nakamura et al., 1997), and barley (Hordeum vulgare) seeds (Burton et al., 2002). Phytoglycogen has structural similarities to glycogen in that both are water soluble and have a higher branch frequency than amylopectin. Accordingly, it was proposed that the trimming of glucans produced by SS and BE isoforms by ISA1 removes branches that interfere with the formation of secondary and tertiary structures (i.e. organized arrays of double helices), thereby facilitating amylopectin biosynthesis and crystallization (Ball et al., 1996). Compared with ISA1, the other two DBEs (LDA and ISA3) have different substrate specificities, both preferring substrates with short outer chains, such as β-limit dextrins, suggesting that their role is primarily in starch degradation. Consistently, mutating these genes in Arabidopsis causes a starch-excess phenotype rather than phytoglycogen accumulation (Delatte et al., 2006).Although it is now widely accepted that a degree of debranching occurs to control branch number and positioning in amylopectin, the importance of this for crystalline starch production is still uncertain. Several studies have shown that some cell types in isa1-deficient mutants still produce some starch (e.g. epidermal and bundle sheath cells in Arabidopsis mutants; Delatte et al., 2005), indicating that other factors can also affect the partitioning between phytoglycogen and starch.No starch granules are made in the Arabidopsis isa1isa2isa3lda quadruple mutant, which lacks all three DBEs (Streb et al., 2008). Although suggestive of redundancy between the DBEs, the loss of each enzyme has distinct effects on amylopectin or phytoglycogen structure, consistent with their different substrate specificities. Furthermore, the loss of starch granules in isa1isa2isa3lda was shown to be at least partly due to the actions of α-amylase; typical α-amylolytic products (short malto-oligosaccharides) accumulated alongside phytoglycogen. Mutation of the gene encoding the chloroplastic α-AMYLASE3 (AMY3) eliminated these short malto-oligosaccharides and restored starch granule biosynthesis in all cell types examined. This unexpected result showed that crystalline glucans can be produced in the absence of DBE activity, despite an altered branching pattern. Streb et al. (2008) proposed that AMY3 shortens external chains of the glucans made by SSs and BEs so that they cannot form double helices with their neighbors. This idea is consistent with models for amylopectin, in which a suitable CLD is a critical factor in the formation of the secondary and higher-order crystalline structures (Gidley and Bulpin, 1987; Pfannemüller, 1987). Thus, factors that affect the CLD, such as a failure to sufficiently elongate new branches or concomitant chain degradation by amylases, should also affect crystallinity. Indeed, early studies of maize mutants (that were subsequently shown to be affected in DBE and SS activities) reported that loss of SS in a DBE mutant background altered the ratio of starch to phytoglycogen compared with the DBE mutants alone (Cameron and Cole, 1954; Creech, 1965).The aim of this work was to use genetics to systematically vary both branch point position and chain lengths and determine the impact on glucan amount, structure, and starch granule formation in Arabidopsis. We analyzed mutants lacking combinations of SSs (to vary chain lengths) in the absence of the debranching enzyme ISA1-ISA2 (to change branch point distribution/frequency). This revealed that the length of external chains is a key factor in the production of a crystallization-competent glucan. Remarkably, our results also provide evidence for phytoglycogen production due to mutations just in SSs. Our results indicate that this phenomenon is largely masked by the presence of ISA1-ISA2, which degrades the aberrant glucan instead of trimming it to amylopectin.