HIV-specific CD4 T cell responses to different viral proteins have discordant associations with viral load and clinical outcome

A successful prophylactic vaccine is characterized by long-lived immunity, which is critically dependent on CD4 T cell-mediated helper signals. Indeed, most licensed vaccines induce antigen-specific CD4 T cell responses, in addition to high-affinity antibodies. However, despite the important role of CD4 T cells in vaccine design and natural infection, few studies have characterized HIV-specific CD4 T cells due to their preferential susceptibility to HIV infection. To establish at the population level the impact of HIV-specific CD4 T cells on viral control and define the specificity of HIV-specific CD4 T cell peptide targeting, we conducted a comprehensive analysis of these responses to the entire HIV proteome in 93 subjects at different stages of HIV infection. We show that HIV-specific CD4 T cell responses were detectable in 92% of individuals and that the breadth of these responses showed a significant inverse correlation with the viral load (P = 0.009, R = -0.31). In particular, CD4 T cell responses targeting Gag were robustly associated with lower levels of viremia (P = 0.0002, R = -0.45). Importantly, differences in the immunodominance profile of HIV-specific CD4 T cell responses distinguished HIV controllers from progressors. Furthermore, Gag/Env ratios were a potent marker of viral control, with a high frequency and magnitude of Gag responses and low proportion of Env responses associated with effective immune control. At the epitope level, targeting of three distinct Gag peptides was linked to spontaneous HIV control (P = 0.60 to 0.85). Inclusion of these immunogenic proteins and peptides in future HIV vaccines may act as a critical cornerstone for enhancing protective T cell responses.     

Effect of bioaugmentation and biostimulation on sulfate-reducing column startup captured by functional gene profiling

Sulfate-reducing permeable reactive zones (SR-PRZs) depend upon a complex microbial community to utilize a lignocellulosic substrate and produce sulfides, which remediate mine drainage by binding heavy metals. To gain insight into the impact of the microbial community composition on the startup time and pseudo-steady-state performance, functional genes corresponding to cellulose-degrading (CD), fermentative, sulfate-reducing, and methanogenic microorganisms were characterized in columns simulating SR-PRZs using quantitative polymerase chain reaction (qPCR) and denaturing gradient gel electrophoresis (DGGE). Duplicate columns were bioaugmented with sulfate-reducing or CD bacteria or biostimulated with ethanol or carboxymethyl cellulose and compared with baseline dairy manure inoculum and uninoculated controls. Sulfate removal began after ~?15?days for all columns and pseudo-steady state was achieved by Day 30. Despite similar performance, DGGE profiles of 16S rRNA gene and functional genes at pseudo-steady state were distinct among the column treatments, suggesting the potential to control ultimate microbial community composition via bioaugmentation and biostimulation. qPCR revealed enrichment of functional genes in all columns between the initial and pseudo-steady-state time points. This is the first functional gene-based study of CD, fermentative and sulfate-reducing bacteria and methanogenic archaea in a lignocellulose-based environment and provides new qualitative and quantitative insight into startup of a complex microbial system.     

Insulin resistance in patients with cirrhosis and portal hypertension

Insulin resistance (IR) is involved in the pathogenesis of endothelial dysfunction and is also present in patients with cirrhosis. Intrahepatic endothelial dysfunction plays a major role, increasing hepatic vascular resistance and promoting portal hypertension (PH). In addition, β-adrenergic agonists and insulin share several intracellular signaling pathways. Thus IR may influence the response to β-blockers. This study aimed at evaluating the relationship between IR and hepatic hemodynamics in patients with cirrhosis and with the portal pressure response to acute β-blockade. Forty-nine patients with cirrhosis and PH were included. Hepatic and systemic hemodynamics were measured, and IR was estimated by using the updated homeostasis model assessment (HOMA)-2 index. Patients with HOMA-2 > 2.4 were considered IR. In patients with hepatic venous pressure gradient (HVPG) ≥ 10 mmHg) [clinically significant PH (CSPH)], hemodynamic measurements were performed again 20 min after intravenous propranolol. Mean HOMA-2 index was 3 ± 1.4. Fifty-seven percent of patients had IR. A weak correlation between HOMA-2 index and HVPG was observed. Eighty-six percent of patients had CSPH. HOMA-2 index was an independent predictor of CSPH. However, in patients with CSPH, the correlation between HOMA-2 index and HVPG was lost. HVPG, but not IR, predicted the presence of esophageal varices. Response to propranolol was not different between patients with or without IR. In nondiabetic patients with cirrhosis, HOMA-2 index is directly associated with the presence of CSPH and indirectly with varices, but does not allow either grading HVPG or predicting its response to propranolol.     

Predation ability and non-consumptive effects of Notonecta sellata (Heteroptera: Notonectidae) on immature stages of Culex pipiens (Diptera: Culicidae)

Predators may have multiple effects on prey, including the mortality caused by consumption, but also non-consumptive effects when prey alter their life history traits in the presence of predators. This study aimed to describe the consumption ability and the non-consumptive effects of Notonecta sellata (Heteroptera: Notonectidae) on immature stages of Culex pipiens (Diptera: Culicidae). Results showed that adult N. sellata were capable of preying on all larval instars, although they consumed more individuals of the 2(nd) and 3(rd) instars. Immature mosquitoes raised in the presence of, but without contact with, predators showed a slower development and smaller-sized emerging adults than those raised in the control treatments. Similar survival rates were recorded in the predator and control treatments. The present study suggests that N. sellata adults negatively affect Cx. pipiens populations in two ways: a) by increasing immature stage mortality as a result of direct consumption and extended development times; and b) by reducing their number of offspring, as a result of delayed reproduction and a lower fecundity of adults.     

Patterns of genetic differentiation in the <Emphasis Type="Italic">Gymnogeophagus gymnogenys</Emphasis> species complex,a neotropical cichlid from South American basins

The neotropical cichlid genus Gymnogeophagus is distributed in the Río de la Plata basin and in Dos Patos and Merín coastal lagoons on the border between Uruguay and southern Brazil. A phylogeographic approach based on mitochondrial cytochrome b analysis was performed to assess the patterns and processes of differentiation in this taxon. Gymnogeophagus gymnogenys showed high haplotype diversity (H = 0.992) and corrected mtDNA genetic distances ranged from 0 to 5.3%. Our analyses yielded robust support for the existence of four monophyletic groups within G. gymnogenys from the analyzed basins. No correlation between the aforementioned clades and geographic structure was found, since individuals belonging to different phylogenetic clades inhabit the same locality. The phylogeographic approach presented here showed that these four phylogroups (1, 2, 3 and 4) were sister groups. Our present findings would corroborate that G. gymnogenys could be integrated by different phylogenetic lineages, showing an explosive differentiation pattern and confirming the hypothesis that this taxon constitutes a species complex.     

Alternative reproductive strategies of Ostrea puelchana

Three reproductive strategies of Ostrea puelchana from the San Matias Gulf (Rio Negro, Argentina) are described and discussed. These relate to the degree of grouping shown by the oysters; i.e., (a) Carriage (this strategie is unique to the Ostreidae); (b) clusters and (c) isolation. Incidence of these strategies differed among three study sites (Banco Reparo, Las Grutas and Bajo Oliveira). Carriage incidence was maximal at Bajo Oliveira (69.4 % of the individuals), intermediate at Banco Reparo (49.7 %), and minimal at Las Grutas (19.7%), where clusters and isolated individuals predominate. Clusters constituted only a small fraction at Bajo Oliveira (1.1 %) and Banco Reparo (3.5%). The percentage of males larger than 50 mm was notedly lower at Banco Reparo (8.0 %) than at Las Grutas (39.3 %). The Las Grutas oysters associated in clusters have a higher percentage of males (57.9%) than at other locations and in any other type of association.Sex ratio and the particular dominant reproductive strategy are characteristic of each area, indicating a balance between the different strategies to improve fertilization efficiency.     

On simulation of air temperature curve near the ground in presence of frosts in Valley of Perote (Mexico)

An exponential of the time function was used in order to model the air temperature curve near the ground after frost in the Valley of Perote (Mexico). From January to March 1989 air temperature was recorded with a telethermograph, and data from 22 frosts were used to adjust and evaluate the exponential function.     

Comparison of microbial community composition and activity in sulfate-reducing batch systems remediating mine drainage

Five microbial inocula were evaluated in batch tests for the ability to remediate mine drainage (MD). Dairy manure (DM), anaerobic digester sludge, substrate from the Luttrell (LUTR) and Peerless Jenny King (PJK) sulfate-reducing permeable reactive zones (SR-PRZs) and material from an MD-treatment column that had been inoculated with material from a previous MD-treatment column were compared in terms of sulfate and metal removal and pH neutralization. The microbial communities were characterized at 0, 2, 4, 9, and 14 weeks using denaturing gradient gel electrophoresis and quantitative polymerase chain reaction to quantify all bacteria and the sulfate-reducing bacteria of the genus Desulfovibrio. The cultures inoculated with the LUTR, PJK, and DM materials demonstrated significantly higher rates of sulfate and metal removal, and contained all the microorganisms associated with the desired functions of SR-PRZs (i.e., polysaccharide degradation, fermentation, and sulfate reduction) as well as a relatively high proportion of Desulfovibrio spp. These results demonstrate that inoculum influences performance and also provide insights into key aspects of inoculum composition that impact performance. This is the first systematic biomolecular examination of the relationship between microbial community composition and MD remediation capabilities.     

Mitogenic activity of Cratylia mollis lectin on human lymphocytes.

The mitogenic effect of Cratylia mollis seed lectin preparations containing two (Cramoll 1,4) or one molecular form (Cramoll 1) showed activity similar to the well known T-cell mitogen, concanavalin A (Con A). The effect on human lymphocytes was analyzed through a colorimetric assay using 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT). Inhibition of lymphocyte proliferation with methyl-alpha-d-mannoside (both preparations) indicated that the mitogenic effect involved carbohydrate lectin binding sites.     

The fall of a symbol? A high predation rate by the introduced horseshoe whip snake <Emphasis Type="Italic">Hemorrhois hippocrepis</Emphasis> paints a bleak future for the endemic Ibiza wall lizard <Emphasis Type="Italic">Podarcis pityusensis</Emphasis>

Invasive species currently account for a major threat to global biodiversity, and island ecosystems are among the most vulnerable, because of the frequency and success of species introductions on islands. Within Mediterranean islands, reptiles not only are frequently introduced species but are also among the most threatened because of these introductions. The Balearic archipelago is a good example of this, since only two of its current 16 species of reptiles are native. Thirteen years ago, the snake Hemorrhois hippocrepis was introduced by cargo in Ibiza island, and it is in expansion. Individuals obtained from an early eradication campaign showed a fast expression of phenotypic plasticity and acquired larger sizes than those of the source population, probably due to a high prey availability and predator scarcity. The species is thriving at the expense of a small variety of native and non-native prey, but the predation pressure on the endemic Podarcis pityusensis, the only native reptile in the island, is very high, as this lizard represents 56% of the prey in frequency, which might threaten its survival on the long term. Our results on the feeding ecology of the snake are of sufficient concern to justify the maintenance of actions to eradicate this invader.