Cloning and expression profiles of tumor suppressor QM homologue in response to granulovirus in Pieris rapae

The tumor suppressor, QM, has been cloned and characterized from various model organisms such as human, plant and invertebrates. Yet, it has not been seriously investigated for its role in conjunction with antiviral mechanisms involving innate insect immunity. From the expressed sequence tag (ESTs) project, conducted with larval cDNA library of cabbage butterfly, Pieris rapae, a partial fragment (718 bp) of QM homologue, termed PrQM containing 660 bp long open reading frame (ORF) encoding protein of 219 amino acids was identified. In silico analysis of PrQM ORF revealed the presence of ribosomal protein L10a/L10e type domain. Phylogenetic analysis of the P. rapae QM‐like protein showed high amino acid sequence similarity with other PrQM polypeptides identified from Heliothis virescenes (95%), Plutella rapae (92%), Bombyx mori (92%), Drosophila melanogaster (89%), and Polyrhachis vicina (85%). The butterfly QM has the closest phylogenetic relationship to a moth (Hv) QM homologue. Further investigations revealed the expression of PrQM at all developmental stages, with pronounced presence at the egg stage. In addition, spatial pattern analysis indicated its high expression in the head, salivary gland, integument and fat body with visible presence in Malpighian tubule and gut. Time course expression studies conducted after immune‐challenge with lipoteichoic acid (LTA) showed the induction of PrQM mRNA at 12 h and 24 h after challenge and also in response to granulovirus (GV). Results of this investigation therefore suggest possible role of QM‐like proteins from Pieris rapae to be involved in innate antiviral immune responses. Further elucidation on the precise function of PrQM during antiviral immune responses by using RNA interference remains a viable research front.     

The effect of a single burn event on the aquatic invertebrates in artesian springs

Fire can often occur in aquatic ecosystems, which may affect aquatic invertebrates. Despite the importance of aquatic invertebrates to ecosystem function, the effect of fire on these environments has been little studied. We studied the effects of fire on aquatic invertebrates in artesian springs in the arid zone of South Australia. Artesian springs are a unique and threatened ecosystem, containing several rare and endemic species. Evidence suggests these wetlands were routinely burnt by indigenous Aboriginal people before European settlement over 100 years ago. Recently, burning has been suggested as a reinstated management tool to control the dominant reed Phragmites australis. A reduction in the cover of the reed may benefit the threatened flora and fauna through enhancement of water flow. Three artesian springs were burnt and aquatic invertebrates sampled from the burnt and three unburnt springs. A single fire in late winter completely burnt the dominant vegetation, followed by recovery of Phragmites over the following 2 years. A single fire event did not deplete populations of endemic aquatic invertebrates in artesian springs, but probably did not substantially benefit these populations either. Isopods, amphipods, ostracods and three species of hydrobiid snail survived the fire event, and most had increased in number 1 month post fire but then returned to pre‐burnt numbers by 1 year post fire. Morphospecies richness of all identified invertebrates increased over time in all springs, but did not differ appreciably between burnt and unburnt springs. If burning artesian springs is to be adopted as a management tool to suppress the growth of Phragmites australis, we conclude that the endemic aquatic invertebrates will survive a single burn event, without negative effect to their populations.     

Richness and diversity of Leguminosae in an altitudinal gradient in the tropical semi‐arid zone of Brazil

Abstract Many studies are based on the premise that, on a local scale, diversity is the result of ecological processes, whereas on a regional scale factors such as the topography, geology, hydrology, and historical and evolutionary events would influence this control. The Baturité Mountain Range (Ceará state), located in the Brazilian semi‐arid zone, is considered an area of extreme importance for conservation with its vegetation varying with the altitude and slope (windward vs. leeward). On the windward (wet) slope, rainforest dominates, whereas the leeward (dry) slope is dominated by seasonal forests and thorny woodland. The aim of this study was to contribute to the knowledge of the patterns of richness and diversity of the family Leguminosae on a local scale (Baturité Mountain Range) as well as a regional scale (northeastern Brazil). The two slopes present quite distinct floras. The dry slope presents higher richness and diversity indices for Leguminosae than the wet slope. The highest diversity of Leguminosae in the dry areas did not corroborate the ideas of other studies carried out in neotropical forests (total flora) that the higher species richness was predicted for wet areas. The present study indicates that the historical and evolutionary processes influence the diversity patterns on a local scale (Baturité Mountain Range), as well as on a regional scale (Brazilian semi‐arid). Our results reinforce the uniqueness of each portion of this area and its importance for conservation.     

Phylogenetic and population genetic divergence correspond with habitat for the pathogen Colletotrichum cereale and allied taxa across diverse grass communities

Over the past decade, the emergence of anthracnose disease has newly challenged the health of turfgrasses on North American golf courses, resulting in considerable economic loss. The fungus responsible for the outbreaks, Colletotrichum cereale , has also been identified from numerous natural grasses and cereal crops, although disease symptoms are generally absent. Here we utilize phylogenetic and population genetic analyses to determine the role of ecosystem in the advancement of turfgrass anthracnose and assess whether natural grass and/or cereal inhabitants are implicated in the epidemics. Using a four-gene nucleotide data set to diagnose the limits of phylogenetic species and population boundaries, we find that the graminicolous Colletotrichum diverged from a common ancestor into distinct lineages correspondent with host physiology (C3 or C4 photosynthetic pathways). In the C4 lineage, which includes the important cereal pathogens Colletotrichum graminicola , C. sublineolum , C. falcatum , C. eleusines , C. caudatum and several novel species, host specialization predominates, with host-associated lineages corresponding to isolated sibling species. Although the C3 lineage — C. cereale — is comprised of one wide host-range species, it is divided into 10 highly specialized populations corresponding to ecosystem and/or host plant, along with a single generalist population spread across multiple habitat types. Extreme differentiation between the specialized C. cereale populations suggests that asymptomatic nonturfgrass hosts are unlikely reservoirs of infectious disease propagules, but gene flow between the generalist population and the specialized genotypes provides an indirect mechanism for genetic exchange between otherwise isolated populations and ecosystems.     

Effects of host plant architecture on colonization by galling insects

Abstract: To study the abundance and occurrence of herbivore insects on plants it is important to consider plant characteristics that may control the insects. In this study the following hypotheses were tested: (i) an increase of plant architecture increases species richness and abundance of gall‐inducing insects and (ii) plant architecture increases gall survival and decreases parasitism. Two hundred and forty plants of Baccharis pseudomyriocephala Teodoro (Asteraceae) were sampled, estimating the number of shoots, branches and their biomass. Species richness and abundance of galling insects were estimated per module, and mortality of the galls was assessed. Plant architecture influenced positively species richness, abundance and survival of galls. However, mortality of galling insects by parasitoids was low (13.26%) and was not affected by plant architecture, thus suggesting that other plant characteristics (a bottom‐up pressure) might influence gall‐inducing insect communities more than parasitism (a top‐down pressure). The opposite effect of herbivore insects on plant characteristics must also be considered, and such effects may only be assessed through manipulative experiments.     

21st century climate change threatens mountain flora unequally across Europe

Continental‐scale assessments of 21st century global impacts of climate change on biodiversity have forecasted range contractions for many species. These coarse resolution studies are, however, of limited relevance for projecting risks to biodiversity in mountain systems, where pronounced microclimatic variation could allow species to persist locally, and are ill‐suited for assessment of species‐specific threat in particular regions. Here, we assess the impacts of climate change on 2632 plant species across all major European mountain ranges, using high‐resolution (ca. 100 m) species samples and data expressing four future climate scenarios. Projected habitat loss is greater for species distributed at higher elevations; depending on the climate scenario, we find 36–55% of alpine species, 31–51% of subalpine species and 19–46% of montane species lose more than 80% of their suitable habitat by 2070–2100. While our high‐resolution analyses consistently indicate marked levels of threat to cold‐adapted mountain florae across Europe, they also reveal unequal distribution of this threat across the various mountain ranges. Impacts on florae from regions projected to undergo increased warming accompanied by decreased precipitation, such as the Pyrenees and the Eastern Austrian Alps, will likely be greater than on florae in regions where the increase in temperature is less pronounced and rainfall increases concomitantly, such as in the Norwegian Scandes and the Scottish Highlands. This suggests that change in precipitation, not only warming, plays an important role in determining the potential impacts of climate change on vegetation.     

Shifting dynamic forces in fish stock fluctuations triggered by age truncation?

Accumulating evidence shows that environmental fluctuations and exploitation jointly affect marine fish populations, and understanding their interaction is a key issue for fisheries ecology. In particular, it has been proposed that age truncation induced by fisheries exploitation may increase the population's sensitivity to climate. In this study, we use unique long‐term abundance data for the Northeast Arctic stock of cod (Gadus morhua) and the Norwegian Spring‐Spawning stock of herring (Clupea harengus), which we analyze using techniques based on age‐structured population matrices. After identifying time periods with different age distributions in the spawning stock, we use linear models to quantify the relative effect of exploitation and temperature on the population growth rates. For the two populations, age truncation was found to be associated with an increasing importance of temperature and a relatively decreasing importance of exploitation, while the population growth rate became increasingly sensitive to recruitment variations. The results suggested that the removal of older age classes reduced the buffering capacity of the population, thereby making the population growth rate more dependent on recruitment than adult survival and increasing the effect of environmental fluctuations. Age structure appeared as a key characteristic that can affect the response of fish stocks to climate variations and its consequences may be of key importance for conservation and management.     

Rethinking species' ability to cope with rapid climate change

Ongoing climate change is assumed to be exceptional because of its unprecedented velocity. However, new geophysical research suggests that dramatic climatic changes during the Late Pleistocene occurred extremely rapid, over just a few years. These abrupt climatic changes may have been even faster than contemporary ones, but relatively few continent‐wide extinctions of species have been documented for these periods. This raises questions about the ability of extant species to adapt to ongoing climate change. We propose that the advances in geophysical research challenge current views about species' ability to cope with climate change, and that lessons must be learned for modelling future impacts of climate change on species.     

DEVELOPMENT OF A LEXICON FOR BEEF FLAVOR IN INTACT MUSCLE

ABSTRACT

A lexicon describing the flavor characteristics of beef across different cuts, grades, and cooking temperatures and methods was developed. Four major cuts of the United States Department of Agriculture (USDA) quality grade beef were cooked to five endpoint temperatures using braising, broiling (oven broiling and electric charbroiling), roasting and grilling (indoor and outdoor grilling). Six highly trained panelists identified and defined a total of 38 aroma and flavor characteristics in 176 beef samples. Beef identity, brown/roasted, bloody/serumy, metallic, fat‐like, overall sweet, sour aromatics and five tastes were present in practically all samples. Other attributes were present only in certain samples, depending on either the sample group or the cooking method/endpoint temperature combination used. This lexicon potentially offers the beef industry a standard tool to identify and quantify flavor attributes as impacted by temperature, cooking method, aging process, storage time, diet regime, packaging, USDA quality grades, etc.

PRACTICAL APPLICATIONS

Until now, the beef industry's main focus has been to assess beef tenderness and juiciness, with an emphasis on ways to improve beef texture. Meat companies and academic institutions have been using the 1995 American Meat Science Association guidelines to assess the flavor of beef, which are not comprehensive. Recent work has focused on flavor, and the industry needs a standardized flavor lexicon that can be used for many projects. It is important for the industry to be able to systematically identify and quantify flavor attributes that drive consumer acceptance.