Grb7 SH2 domain structure and interactions with a cyclic peptide inhibitor of cancer cell migration and proliferation

Background

Human growth factor receptor bound protein 7 (Grb7) is an adapter protein that mediates the coupling of tyrosine kinases with their downstream signaling pathways. Grb7 is frequently overexpressed in invasive and metastatic human cancers and is implicated in cancer progression via its interaction with the ErbB2 receptor and focal adhesion kinase (FAK) that play critical roles in cell proliferation and migration. It is thus a prime target for the development of novel anti-cancer therapies. Recently, an inhibitory peptide (G7-18NATE) has been developed which binds specifically to the Grb7 SH2 domain and is able to attenuate cancer cell proliferation and migration in various cancer cell lines.

Results

As a first step towards understanding how Grb7 may be inhibited by G7-18NATE, we solved the crystal structure of the Grb7 SH2 domain to 2.1 Å resolution. We describe the details of the peptide binding site underlying target specificity, as well as the dimer interface of Grb 7 SH2. Dimer formation of Grb7 was determined to be in the μM range using analytical ultracentrifugation for both full-length Grb7 and the SH2 domain alone, suggesting the SH2 domain forms the basis of a physiological dimer. ITC measurements of the interaction of the G7-18NATE peptide with the Grb7 SH2 domain revealed that it binds with a binding affinity of K_d = ~35.7 μM and NMR spectroscopy titration experiments revealed that peptide binding causes perturbations to both the ligand binding surface of the Grb7 SH2 domain as well as to the dimer interface, suggesting that dimerisation of Grb7 is impacted on by peptide binding.

Conclusion

Together the data allow us to propose a model of the Grb7 SH2 domain/G7-18NATE interaction and to rationalize the basis for the observed binding specificity and affinity. We propose that the current study will assist with the development of second generation Grb7 SH2 domain inhibitors, potentially leading to novel inhibitors of cancer cell migration and invasion.     

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

Interactive Tree Of Life (iTOL) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. Trees can be interactively pruned and re-rooted. Various types of data such as genome sizes or protein domain repertoires can be mapped onto the tree. Export to several bitmap and vector graphics formats is supported. AVAILABILITY: iTOL is available at http://itol.embl.de     

Enhanced phosphorus nutrition in monocots and dicots over-expressing a phosphorus-responsive type I H+-pyrophosphatase

Plants challenged by limited phosphorus undergo dramatic morphological and architectural changes in their root systems in order to increase their absorptive surface area. In this paper, it is shown that phosphorus deficiency results in increased expression of the type I H⁺-pyrophosphatase AVP1 (AVP, Arabidopsis vacuolar pyrophosphatase), subsequent increased P-type adenosine triphosphatase (P-ATPase)-mediated rhizosphere acidification and root proliferation. Molecular genetic manipulation of AVP1 expression in Arabidopsis , tomato and rice results in plants that outperform controls when challenged with limited phosphorus. However, AVP1 over-expression and the resulting rhizosphere acidification do not result in increased sensitivity to AlPO₄, apparently because of the enhancement of potassium uptake and the release of organic acids. Thus, the over-expression of type I H⁺-pyrophosphatases appears to be a generally applicable technology to help alleviate agricultural losses in low-phosphorus tropical/subtropical soils and to reduce phosphorus runoff pollution of aquatic and marine environments resulting from fertilizer application.     

Comparison of eggshell porosity and estimated gas flux between the brown‐headed cowbird and two common hosts

The brown‐headed cowbird Molothrus ater is a brood‐parasite that lays eggs in nests of a wide range of host species, including the closely‐related red‐winged blackbird Agelaius phoeniceus and the dickcissel Spiza americana. Although cowbird eggs have accelerated development and hatch sooner than similar‐sized host eggs, this development takes place within a thickened eggshell that could impede gas flux to the developing embryo. We tested the hypothesis that the accelerated development of the cowbird embryo relative to hosts is enabled by an increase in eggshell porosity that allows increased fluxes of respiratory gases to and from the developing embryo. We found cowbird eggshell thickness was significantly greater than the eggshells of these two common hosts. Although the number of pores per egg was similar among all three species, the total pore area per egg in cowbirds was significantly greater than that of either host, despite having a smaller eggshell surface area than the red‐winged blackbird. Cowbird egg pore area was 1.9×larger than that of the red‐winged blackbird. Cowbird eggshells had a significantly greater gas flux than those of the red‐winged blackbird and the dickcissel. When conductance was normalized to published values of egg mass, cowbird eggs had a higher mass‐specific conductance than red‐winged blackbird or dickcissel eggs. These results are consistent with the hypothesis that the rapid development of brown‐headed cowbird embryos is facilitated by increased eggshell porosity, and that changes in eggshell porosity represent an adaptation that enables cowbird eggs to hatch earlier than equivalently‐sized host eggs.