Leaf phyllotaxis: Does it really affect light capture?

The intriguing mathematical properties of leaf phyllotaxis still attract scientific attention after centuries of research. Phyllotaxis, and in particular the divergence angle between successive leaves, have been frequently interpreted in terms of maximization of light capture, although certain model simulations of light capture by vertical shoots revealed minor effects of phyllotaxis in comparison with the effect of other morphological features of the plant. However, these simulations assumed a number of simplifications, did not take into account diffuse light, and were not based on real plants with their natural range of morphological variation. This study was aimed at filling these gaps by examining the influence on light harvesting of shoot architecture and divergence angle in four species with spiral phyllotaxis (Quercus ilex, Arbutus unedo, Heteromeles arbutifolia and Daphne gnidium) with a realistic 3-D model (Y-plant). A wide range of divergence angles (from 100° to 154°) was observed within each species, with 144° being the most frequent one. These different divergence angles rendered very different vertical projections of the shoot due to contrasting patterns of leaf overlap as seen from above, but they rendered indistinguishable light interception efficiencies (Ea). Setting the leaves with an opposite-decussate phyllotaxis led, however, to a 40–50% decrease of Ea. The interplay of internode length, leaf size and shape, and leaf elevation angle led to significant species differences in Ea. Thus, only particular phyllotaxis (e.g., decussate) might be functionally inefficient under certain combinations of the various morphological variables that influence light capture of a shoot. This revised version was published online in June 2006 with corrections to the Cover Date.     

Visceral Fat Accumulation as a Risk Factor for Prostate Cancer

Objective: No clear association between obesity or body fat distribution and prostate cancer has been shown. We investigated the relation between visceral fat accumulation as measured by computed tomography (CT) and the occurrence of prostate cancer. Research Methods and Procedures: We compared body fat distribution assessed by a direct method (CT) in 63 prostate cancer cases with 63 age‐matched healthy community controls. A CT scan at the level of the fourth lumbar vertebra was performed in all participants. Results: Patients presented a significantly higher mean total abdominal fat area (509.2 ± 226.1 vs. 334.3 ± 132.9 cm², p < 0.001), mostly because of a higher mean visceral fat area (VF; 324.7 ± 145.6 vs. 177.4 ± 88.4 cm², p < 0.001) and a significantly higher mean ratio between visceral and subcutaneous fat areas (V/S ratio; 1.8 ± 0.4 vs. 1.2 ± 0.4, p < 0.001). A significantly higher risk of prostate cancer was found for participants with higher VF (odds ratio = 4.6; 95% confidence interval = 2.6 to 8.2 per SD increase) and V/S ratio (odds ratio = 6.0; 95% confidence interval = 2.3 to 11.0 per SD increase). Discussion: These results suggest a role for visceral obesity, quantified by CT, as a risk factor for prostate cancer. The action of the adipocytokines secreted by visceral fat cells, steroid hormone disturbances, and increased levels of insulin or other hormones noted in visceral obesity may explain this association.     

伊比利亚河共生的当年生鳟和埃布罗河鳟的夏季摄食关系

1996-1998年8月在Larraun河(埃布罗河流域,西班牙北部)共捕获306尾埃布罗河(鱼岁)和185尾0龄的鳟,分析比较了胃含物组成,并测定了种间的食物重叠.食物的个数百分比组成表明两种都主要摄食水生无脊椎动物.摄食策略图显示两种都是摄食不同食物 种类的广食性种类.另外,比较胃含物和底栖大型无脊椎动物群落表明,0龄的鳟和埃布罗河(鱼岁)不摄食光螺科、钩虾科、细蜉科、 四节蜉科和卷襀科的物种,而喜食摇蚊科、五节蜉科和毛翅目物种.尽管简化的Morisitas指数表明Larraun河中这两种鱼之间的食物重叠是显著的,但由于栖息地不同和摄食的可塑性可以降低种间的竞争,使得该水域的这两种鱼能以相对较大的数量共存.然而,在食物资源和可用栖息地有限的河域,埃布罗河(鱼岁)的引入,其适应性和可塑性有可能威胁单独存在的鳟     

伊比利亚河共生的当年生鳟和埃布罗河鲒的夏季摄食关系

1996—1998年8月在Larraun河（埃布罗河流域,西班牙北部）共捕获306尾埃布罗河鱥和185尾0龄的鳟,分析比较了胃含物组成,并测定了种间的食物重叠。食物的个数百分比组成表明两种都主要摄食水生无脊椎动物。摄食策略图显示两种都是摄食不同食物种类的广食性种类。另外,比较胃含物和底栖大型无脊椎动物群落表明,0龄的鳟和埃布罗河鱥不摄食光螺科、钩虾科、细蜉科、四节蜉科和卷稹科的物种,而喜食摇蚊科、五节蜉科和毛翅目物种。尽管简化的Monsita’s指数表明Larraun河中这两种鱼之间的食物重叠是显著的,但由于栖息地不同和摄食的可塑性可以降低种间的竞争,使得该水域的这两种鱼能以相对较大的数量共存。然而,在食物资源和可用栖息地有限的河域,埃布罗河鱥的引入,其适应性和可塑性有可能威胁单独存在的鳟     

Kinetic and mechanistic analysis of Trypanosoma cruzi trans-sialidase reveals a classical ping-pong mechanism with acid/base catalysis

The trans-sialidase from Trypanosoma cruzi catalyzes the transfer of a sialic acid moiety from sialylated donor substrates to the terminal galactose moiety of lactose and lactoside acceptors to yield alpha-(2,3)-sialyllactose or its derivatives with net retention of anomeric configuration. Through kinetic analyses in which the concentrations of two different donor aryl alpha-sialoside substrates and the acceptor substrate lactose were independently varied, we have demonstrated that this enzyme follows a ping-pong bi-bi kinetic mechanism. This is supported for both the native enzyme and a mutant (D59A) in which the putative acid/base catalyst has been replaced by the demonstration of the half-reaction in which a sialyl-enzyme intermediate is formed. Mass spectrometric analysis of the protein directly demonstrates the formation of a covalent intermediate, while the observation of release of a full equivalent of p-nitrophenol by the mutant in a pre-steady state burst provides further support. The active site nucleophile is confirmed to be Tyr342 by trapping of the sialyl-enzyme intermediate using the D59A mutant and sequencing of the purified peptic peptide. The role of D59 as the acid/base catalyst is confirmed by chemical rescue studies in which activity is restored to the D59A mutant by azide and a sialyl azide product is formed.     

A geometric and algebraic view of MHC-peptide complexes and their binding properties

Background  

Major histocompatibility complex (MHC) molecules present peptides to T lymphocytes. It is of critical biological and medical importance to elucidate how different MHC alleles bind to a specific set of peptides.