Fenced and Fragmented: Conservation Value of Managed Metapopulations

Population fragmentation is threatening biodiversity worldwide. Species that once roamed vast areas are increasingly being conserved in small, isolated areas. Modern management approaches must adapt to ensure the continued survival and conservation value of these populations. In South Africa, a managed metapopulation approach has been adopted for several large carnivore species, all protected in isolated, relatively small, reserves that are fenced. As far as possible these approaches are based on natural metapopulation structures. In this network, over the past 25 years, African lions (Panthera leo) were reintroduced into 44 fenced reserves with little attention given to maintaining genetic diversity. To examine the situation, we investigated the current genetic provenance and diversity of these lions. We found that overall genetic diversity was similar to that in a large national park, and included a mixture of four different southern African evolutionarily significant units (ESUs). This mixing of ESUs, while not ideal, provides a unique opportunity to study the impact of mixing ESUs over the long term. We propose a strategic managed metapopulation plan to ensure the maintenance of genetic diversity and improve the long-term conservation value of these lions. This managed metapopulation approach could be applied to other species under similar ecological constraints around the globe.     

Compared esterification kinetics of the lipase from Burkholderia cepacia either free or encapsulated in a silica aerogel

This paper presents an experimental comparison of the kinetics of esterification catalyzed with the lipase from Burkholderia cepacia, either free, or encapsulated in a silica aerogel dried by the supercritical CO₂ method. The operational characteristics, in terms of pre-equilibration at given water thermodynamic activity a_w, mass of enzyme in the gel, size of aerogel particles, are presented. The kinetic model known as BiBi Ping Pong with inhibition by both substrates has been found to fit relatively well with the experimental results, except when both substrate concentrations were high with the encapsulated enzyme. All kinetics constants were found to be increased by aerogel encapsulation. In particular V_max was increased by a factor of the order of 10 per mg of enzyme.     

Characterization of genome-wide microsatellite markers in rabbitfishes,an important resource for artisanal fisheries in the Indo-West Pacific

Rabbitfishes are reef-associated fishes that support local fisheries throughout the Indo-West Pacific region. Sound management of the resource requires the development of molecular tools for appropriate stock delimitation of the different species in the family. Microsatellite markers were developed for the cordonnier, Siganus sutor, and their potential for cross-amplification was investigated in 12 congeneric species. A library of 792 repeat-containing sequences was built. Nineteen sets of newly developed primers, and 14 universal finfish microsatellites were tested in S. sutor. Amplification success of the 19 Siganus-specific markers ranged from 32 to 79% in the 12 other Siganus species, slightly decreasing when the genetic distance of the target species to S. sutor increased. Seventeen of these markers were polymorphic in S. sutor and were further assayed in S. luridus, S. rivulatus, and S. spinus, of which respectively 9, 10 and 8 were polymorphic. Statistical power analysis and an analysis of molecular variance showed that subtle genetic differentiation can be detected using these markers, highlighting their utility for the study of genetic diversity and population genetic structure in rabbitfishes.     

Exploring the phylogeography of a hexaploid freshwater fish by RAD sequencing

The KwaZulu‐Natal yellowfish (Labeobarbus natalensis) is an abundant cyprinid, endemic to KwaZulu‐Natal Province, South Africa. In this study, we developed a single‐nucleotide polymorphism (SNP) dataset from double‐digest restriction site‐associated DNA (ddRAD) sequencing of samples across the distribution. We addressed several hidden challenges, primarily focusing on proper filtering of RAD data and selecting optimal parameters for data processing in polyploid lineages. We used the resulting high‐quality SNP dataset to investigate the population genetic structure of L. natalensis. A small number of mitochondrial markers present in these data had disproportionate influence on the recovered genetic structure. The presence of singleton SNPs also confounded genetic structure. We found a well‐supported division into northern and southern lineages, with further subdivision into five populations, one of which reflects north–south admixture. Approximate Bayesian Computation scenario testing supported a scenario where an ancestral population diverged into northern and southern lineages, which then diverged to yield the current five populations. All river systems showed similar levels of genetic diversity, which appears unrelated to drainage system size. Nucleotide diversity was highest in the smallest river system, the Mbokodweni, which, together with adjacent small coastal systems, should be considered as a key catchment for conservation.     

COMPETITIVE INTERACTIONS BETWEEN THE OPPORTUNISTIC MACROALGAE CLADOPHORA VAGABUNDA (CHLOROPHYTA) AND GRACILARIA TIKVAHIAE (RHODOPHYTA) UNDER EUTROPHIC CONDITIONS1

In a eutrophic embayment (Waquoit Bay, Massachusetts), Cladophora vagabunda (L.) van den Hoek occurs in thick (sometimes > 1 kg dry wt -m^?2), nearly monospecific unattached mats in deeper regions (2 m), whereas Grac-ilaria tikvahiae McLachlan is largely restricted to shallow (<1 m) areas. We explored these distribution patterns, investigating competitive interactions between these opportunistic species by varying the limiting resource, photon flux density (PFD), and species composition under conditions of N sufficiency in microcosms. Under lower biomass loadings, neither species showed a difference in growth rates in single- and mixed-species stands. With a 25% increase in initial biomass loading, Gracilaria tikvahiae had significantly higher growth rates under saturating PFD and consistently showed greater performance when grown in single-species rather than in mixed-species stands. While growth rate was 2×greater for C. vagabunda in single-species than in mixed-species stands at saturating PFD, this pattern was reversed under limiting irradi-ances. In mixed-species stands at high PFD (comparable to shallow regions of the bay), the growth rate of G. tikvahiae was over 4×higher than that of C. vagabunda. Cladophora vagabunda grew at a faster rate than G. tikvahiae only in the low PFD, mixed-species treatment. Results of this study suggest that the observed distributional patterns of these macroalgae are due in part to interspecific exploitative competition but that tolerance of low PFD by C. vagabunda has led to dominance of these species in distinctive regions of the embayment.     

Chlamydomonas reinhardtii thioredoxins: structure of the genes coding for the chloroplastic m and cytosolic h isoforms; expression in Escherichia coli of the recombinant proteins,purification and biochemical properties

Based on known amino acid sequences, probes have been generated by PCR and used for the subsequent isolation of cDNAs and genes coding for two thioredoxins (m and h) of Chlamydomonas reinhardtii. Thioredoxin m, a chloroplastic protein, is encoded as a preprotein of 140 amino acids (15 101 Da) containing a transit peptide of 34 amino acids with a very high content of Ala and Arg residues. The sequence for thioredoxin h codes for a 113 amino acid protein with a molecular mass of 11817 Da and no signal sequence. The thioredoxin m gene contains a single intron and seems to be more archaic in structure than the thioredoxin h gene, which is split into 4 exons. The cDNA sequences encoding C. reinhardtii thioredoxins m and h have been integrated into the pET-3d expression vector, which permits efficient production of proteins in Escherichia coli cells. A high expression level of recombinant thioredoxins was obtained (up to 50 mg/l culture). This has allowed us to study the biochemical/biophysical properties of the two recombinant proteins. Interestingly, while the m-type thioredoxin was found to have characteristics very close to the ones of prokaryotic thioredoxins, the h-type thioredoxin was quite different with respect to its kinetic behaviour and, most strikingly, its heat denaturation properties.Abbreviations DTT dithiothreitol - FBPase Fructose 1,6-biphosphate phosphatase - FTR ferredoxin-thioredoxin reductase - IPTG isopropyl thiogalactoside - NADP-MDH NADPH-dependent malate dehydrogenase - NMR nuclear magnetic resonance - NTR NADPH-dependent thioredoxin reductase Dedicated to the memory of Claude Crétin     

Inhibition of δ8 → δ7-sterol isomerase and of cycloeucalenol—obtusifoliol isomerase by N-benzyl-8-aza-4α, 10-dimethyl-trans-decal-3β-ol,an analogue of a carbocationic high energy intermediate

An enzymatic assay for the δ⁸ → δ⁷-sterol isomerase, an enzyme involved in sterol biosynthesis, has been developed in higher plants. This assay has been used in the study of various inhibitors. N-Benzyl-8-aza-4α, 10-dimethyl- trans-decal-3β-ol was designed to mimic the C-8 and the C-9 carbocationic high energy intermediates occurring during the reactions catalysed by the δ⁸ → δ⁷-sterol isomerase and the cycloeucalenol obtusifoliol isomerase, respectively. In accordance with the ‘transition state analogues’ theory, this analogue of a high energy intermediate was found to be a very potent and specific inhibitor of the two enzymatic reactions both in vitro and in vivo.     

Electron transport chain and energy transduction in Paracoccus denitrificans under autotrophic growth conditions

Cells of Paracoccus denitrificans grown autotrophically with H₂ as energy source contained a branched respiratory chain. The presence of two terminal oxidases was indicated by two cyanide sensitive sites (K _i =10^-5 M and K _i =10^-3 M). While oxidation of NADH and succinate apparently proceeded via both electron pathways as shown by the inhibition of respiration with cyanide and Antimycin A, oxidation of H₂ involved only the terminal oxidase which was less sensitive to KCN. Oxidation of H₂ was not inhibited by rotenone, and sensitive to only relatively high concentrations of Antimycin A (50 nmol/mg).Under our growth conditions, autotrophic cells contained only very small amounts of cytochrome a +a ₃ . A cytochrome b was able to bind CO (with a peak at 418 nm and a trough at 434 nm in the reduced plus CO minus reduced difference spectrum). This cytochrome b had the spectral characteristics of cytochrome o and could be the alternate oxidase. The respiratory chain contained two b cytochromes (b ₅₅₆ and b ₅₆₂ at 77°K); under steady state conditions only b ₅₅₆ was significantly reduced by NADH and succinate while both b ₅₅₆ and b ₅₆₂ were reduced by H₂.Measurement of respiration-driven proton translocation by spheroplasts showed that the oxidation of H₂ by O₂ was associated with a vectorial ejection of H⁺ (in the outward direction) with aH⁺/O value of 6 to 7.A similar result was obtained with succinate. Oxidation of endogenous substrates gave H⁺/O values corresponding to a H⁺/site ratio of 3 with 3 sites functioning in absence of inhibitors, two sites in the presence of rotenone and one site in the presence of antimycin. The H⁺/O values indicated that two energy transducing sites were involved in the oxidation of H₂ by O₂.Measurement of ATP synthesis in membrane vesicles confirmed that phosphorylation was coupled to H₂ oxidation. However, such determinations which necessitated the use of inverted vesicles, gave P/O values too low to allow any conclusions to be made on the number of coupling sites.     

Characterization of mouse fetal lung cells cultured on a pigskin substrate

Summary Lung organ bits taken from full-term mice were explanted on the dermal surface of sterile, dead pigskin. The cells migrated onto the pigskin dermis and proliferated to form an organoid culture consisting of ductular structures separated by a matrix of epithelial cells. Cells within the ductular structures were ciliated, produced mucin, and exhibited the activities of nonspecific esterase and gamma-glutamyl transferase; therefore they were considered to be derived from bronchial epithelium. Cells forming the matrix possessed the activities of nonspecific esterase and alkaline phosphatase and contained lamellar structures typical of surfactant-producing pneumocyte Type II cells; therefore they were considered to be derived from alveolar precursor cells. This research was supported by Grant-in-Aid 1203 M from the Council for Tobacco Research, awarded to Aaron E. Freeman.     

Studies on the Inhibitory Action of Opiate Compounds in Isolated Bovine Adrenal Chromaffin Cells: Noninvolvement of Stereospecific Opiate Binding Sites

In isolated bovine adrenal chromaffin cells, beta-endorphin, dynorphin, and levorphanol caused a dose-dependent inhibition of catecholamine (CA) secretion elicited by acetylcholine (ACh), with an ID50 of 50, 1.3, and 4.3 microM, respectively. The inhibition by the opiate compounds was specific for the release evoked by ACh and nicotinic drugs and was noncompetitive with ACh. Stereospecific binding sites for the opiate agonist [3H]etorphine were found in homogenates of bovine adrenal medulla (KD = 0.59 nM). beta-Endorphin, dynorphin, levorphanol, and naloxone were potent inhibitors of the binding of [3H]etorphine with an ID50 of 12, 0.4, 5.2, and 6.2 nM, respectively. However, [3,5-I2Tyr1]-beta-endorphin, [3,5-I2Tyr1]-dynorphin, and dextrorphan, three opiate compounds with no or little activity in the guinea pig ileum assay, were relatively ineffective in inhibiting the binding of [3H]etorphine (ID50 700, 600, and 10,000 nM, respectively). On the other hand, these three compounds were equipotent with beta-endorphin, dynorphin, and levorphanol, respectively, in inhibiting the ACh-evoked release of CA from the adrenal chromaffin cells (ID50 of 10, 1.5, and 6 microM, respectively). Inhibition of CA release was also obtained with naloxone (ID50 = 14) microM) and naltrexone (ID50 greater than 10(-4) M), two classical antagonists of opiate receptors, and this effect was additive to that of beta-endorphin. These data indicate that the opiate modulation of CA release from adrenal chromaffin cells is not related to the stimulation of the high affinity stereospecific opiate binding sites of the adrenal medulla. The physiological function of these sites remains to be determined.