Carbon Dioxide Variation in a Hardwood Forest Stream: An Integrative Measure of Whole Catchment Soil Respiration

The concentration of CO₂ in stream water is a product of not only instream metabolism but also upland, riparian, and groundwater processes and as such can provide an integrative measure of whole catchment soil respiration. Using a 5-year dataset of pH, alkalinity, Ca²⁺, and Mg²⁺ in surface water of the West Fork of Walker Branch in eastern Tennessee in conjunction with a hydrological flowpath chemistry model, we investigated how CO₂ concentrations and respiration rates in stream, bedrock, and soil environments vary seasonally and interannually. Dissolved inorganic carbon concentration was highest in summer and autumn (P < 0.05) although the proportion as free CO₂ (pCO₂) did not vary seasonally (P > 0.05). Over the 5 years, pCO₂ was always supersaturated with respect to the atmosphere ranging from 374 to 3626 ppmv (1.0- to 10.1-fold greater than atmospheric equilibrium), and CO₂ evasion from the stream to the atmosphere ranged from 146 to 353 mmol m⁻² d⁻¹. Whereas pCO₂ in surface water exhibited little intra-annual or interannual variation, distinct seasonal patterns in soil and bedrock pCO₂ were revealed by the catchment CO₂ model. Seasonally, soil pCO₂ increased from a winter low of 8167 ppmv to a summer high of 27,068 ppmv. Driven by the seasonal variation in gas levels, evasion of CO₂ from soils to the atmosphere ranged from 83 mmol m⁻² d⁻¹ in winter to 287 mmol m⁻² d⁻¹ in summer. The seasonal variation in soil CO₂ tracked soil temperature (r ²= 0.46, P < 0.001) and model-derived estimates of CO₂ evasion rate from soils agreed with previously reported fluxes measured using chambers (Pearson correlation coefficient = 0.62, P < 0.05) supporting the model assumptions. Although rates of CO₂ evasion were similar between the stream and soils, the overall rate of evasion from the channel was only 0.4% of the 70,752 mol/d that evaded from soils due to the vastly different areas of the two subsystems. Our model provides a means to assess whole catchment CO₂ dynamics from easily collected and measured stream-water samples and an approach to study catchment scale variation in soil ecosystem respiration. Received 24 July 1997; accepted 14 November 1997.     

Characterization of a Helicobacter pylori vaccine candidate by proteome techniques

In a previous two-dimensional (2D) gel electrophoretic study of protein antigens of the gastric pathogen, Helicobacter pylori recognized by human sera, one of the highly and consistently reactive antigens, a protein with M_r of approximately 30?000 (Spot 15) seemed to be of special interest because of low yields on N-terminal protein sequencing. This suggested possible N-terminal modification, as the N-terminal sequence analysis of this 30?000 protein (Spot 15) did not provide a definitive match within the H. pylori genomic database. This protein was isolated by 2D polyacrylamide gel electrophoresis, evaluated by liquid chromatography–mass spectrometry, and found to consist of two related species of approximately 28?100 and 26?500. In parallel, the proteins within this spot were digested in situ with the endoprotease Lys-C. Analysis of the Lys-C digest by matrix-assisted laser desorption time-of-flight mass spectrometry, peptide mapping, and sequence analysis was conducted. Comparison of the mass and sequence of the Lys-C peptides with those derived from a H. pylori genomic library identified an open reading frame of approximately 300 base pairs as the source of the Spot 15 protein. This corresponded to HP0175 in the recently reported H. pylori genome sequence, an open reading frame with some homology to Campylobacter jejeuni cell binding protein 2. Mass spectral and sequence analysis indicated that Spot 15 was a processed product generated by proteolytic cleavage at both the carboxy and amino termini of the 34 open reading frame precursor.     

Statistical Analysis of the Loop-Geometry on a Non-Redundant Database of Proteins

The conformations of protein loops from a non-redundant set of 347 proteins with less than 25% sequence homology have been studied in order to clarify the topological variation of protein loops. Loops have been classified in five types (α-α, α-β, β-α, β-links and β-hairpins) depending on the secondary structures that they embrace. Four variables have been used to describe the loop geometry (3 angles and the end-to-end distance between the secondary structures embracing the loop). Loops with well defined geometry are identified by means of the internal dependency between the geometrical variables by application of information-entropy theory. From this it has been deduced that loops formed by less than 10 residues show an intrinsic dependency on the geometric variables that defines the motif shape. In this interval the most stable loops are found for short connections owing to the entropic energy analysed.     

附睾局部组织肾素血管紧张素系统(英文)

附睾内液体微环境对精子的成熟和贮藏是相当重要的。附睾液体的形成取决于附睾上皮的吸收与分泌功能,而先前的实验已经证明：这些吸收与分泌的活动是受到除神经激素以外旁分泌与自分泌的调控。虽然肾素血管紧张素系统（ＲＡＳ）在很多组织上旁分泌与自分泌的作用已多有报导,但其在附睾的存在及作用仍鲜为人知。本综述总结了本实验室在这方面的研究结果,通过使用不同的实验方法,例如,免疫组织化学,放射免疫分析,分子生物学及短路电流电生理学方法,我们得到的结果显示了ＲＡＳ主要成员在附睾的分布（Ｆｉｇ．１）和表达,并阐明了血管紧张素ＩＩ对附睾阴离子分泌的调控作用（Ｆｉｇｓ．２＆３）。本综述还就血管紧张素ＩＩ对附睾旁分泌与自分泌的作用及其机制（Ｆｉｇ．４）,以及对精子功能的作用进行了讨论。     

Comparison between the uptake of nitrous oxide and nitric oxide in the human nose

The absorption of nitrous oxide(N₂O) during unidirectional flowwas compared with the rate of uptake of nitric oxide (NO). At flowrates of 10, 20, and 60 ml/min from one nostril to the other, with thesoft palate closed, the N₂Oreached a steady-state rate of absorption in 5-15 min. The meansuperficial capillary blood flow (n = 5) calculated from solubility and the steady-state rate ofN₂O absorption ranged from 13.3 to15.9 ml/min. The relation between absorption ofN₂O in the nose and capillaryblood flow fits a ventilation-perfusion model used by others todescribe uptake of inert, soluble gases in the rat nose. By contrast,the rate of uptake of NO gas, which is chemically reactive, is25-31 times as great as predicted by just its blood-to-airpartition coefficient. Exogenous NO (16.9 parts/million) did not induce nasal vasodilation as measured with laser Doppler andN₂O absorption methods. Thedifference between the measured rate of uptake of NO and the rate ofuptake attributable to its partition coefficient in blood at the rateof blood flow calculated from N₂Ouptake is probably due to chemical reaction of NO in mucous secretions, nasal tissues, and capillary blood.

     

Skeletal muscle vasodilation at the onset of exercise

The purpose of this study was to determinewhether -adrenergic or muscarinic receptors are involved in skeletalmuscle vasodilation at the onset of exercise. Mongrel dogs(n = 7) were instrumented with flow probes on both externaliliac arteries and a catheter in one femoral artery. Propranolol (1 mg), atropine (500 µg), both drugs, or saline was infusedintra-arterially immediately before treadmill exercise at 3 miles/h,0% grade. Immediate and rapid increases in iliac blood flow occurredwith initiation of exercise under all conditions. Peak blood flows werenot significantly different among conditions (682 ± 35, 646 ± 49, 637 ± 68, and 705 ± 50 ml/min, respectively). Although thedoses of antagonists employed had no effect on heart rate or systemicblood pressure, they were adequate to abolish agonist-induced increasesin iliac blood flow. Because neither propranolol nor atropine affected iliac blood flow, we conclude that activation of -adrenergic andmuscarinic receptors is not essential for the rapid vasodilation inactive skeletal muscle at the onset of exercise in dogs.

     

A matrix-located processing peptidase of plant mitochondria

Nuclear-encoded mitochondrial precursor proteins are proteolytically processed inside the mitochondrion after import. The general mitochondrial processing activity in plant mitochondria has been shown to be integrated into the cytochrome bc₁ complex of the respiratory chain. Here we investigate the occurrence of an additional, matrix-located processing activity by incubation of the precursors of the soybean mitochondrial proteins, alternative oxidase, the F_Ad subunit of the ATP synthetase and the tobacco F₁ subunit of the ATP synthase, with the membrane and soluble components of mitochondria isolated from soybean cotyledons and spinach leaves. A matrix-located peptidase specifically processed the precursors to the predicted mature form in a reaction which was sensitive to orthophenanthroline, a characteristic inhibitor of mitochondrial processing peptidase (MPP). The specificity of the matrix peptidase was illustrated by the inhibition of processing of the alternative oxidase precursor in both soybean and spinach matrix extracts upon altering a single amino acid residue in the targeting presequence (-2 Arg to Gly). Additionally, there was no evidence for general proteolysis of precursor proteins incubated with the matrix. The purity of the matrix fractions was ascertained by spectrophotometric and immunological analyses. The results demonstrate that there is a specific processing activity in the matrix of soybean and spinach in addition to the previously well characterized membrane-bound MPP integrated into the cytochrome bc₁ complex of the respiratory chain.     

Structural Investigations of Hydrogen Cyanide Polymers: New Insights Using TMAH Thermochemolysis/GC-MS

Hydrogen cyanide polymers form spontaneously from HCN and traces of base catalysts. It is probable that these polymers played an important role in the early stages of chemical evolution. Nevertheless, their full structural characterization has still not been accomplished. A number of mass spectrometric methods have now been applied to this structural problem including FAB-MS, thermal desorption EI-MS, ESI-MS, APCI-MS and off-line TMAH thermochemolysis/GC-MS. This latter method causes bond cleavage and in situ methylation producing a suite of products which provides valuable insight into the substructural features of HCN polymers and also promises to serve as a sensitive diagnostic tool for detecting the presence of HCN polymers in samples from diverse sources.