Biologically relevant effects of mRNA amplification on gene expression profiles

Background  

Gene expression microarray technology permits the analysis of global gene expression profiles. The amount of sample needed limits the use of small excision biopsies and/or needle biopsies from human or animal tissues. Linear amplification techniques have been developed to increase the amount of sample derived cDNA. These amplified samples can be hybridised on microarrays. However, little information is available whether microarrays based on amplified and unamplified material yield comparable results.     

Distinct physiological and metabolic reprogramming by highbush blueberry (Vaccinium corymbosum) cultivars revealed during long‐term UV‐B radiation

Despite the Montreal protocol and the eventual recovery of the ozone layer over Antarctica, there are still concerns about increased levels of ultraviolet‐B (UV‐B) radiation in the Southern Hemisphere. UV‐B induces physiological, biochemical and morphological stress responses in plants, which are species‐specific and different even for closely related cultivars. In woody plant species, understanding of long‐term mechanisms to cope with UV‐B‐induced stress is limited. Therefore, a greenhouse UV‐B daily course simulation was performed for 21 days with two blueberry cultivars (Legacy and Bluegold) under UV‐B_BE irradiance doses of 0, 0.07 and 0.19 W m^?2. Morphological changes, photosynthetic performance, antioxidants, lipid peroxidation and metabolic features were evaluated. We found that both cultivars behaved differently under UV‐B exposure, with Legacy being a UV‐B‐resistant cultivar. Interestingly, Legacy used a combined strategy: initially, in the first week of exposure its photoprotective compounds increased, coping with the intake of UV‐B radiation (avoidance strategy), and then, increasing its antioxidant capacity. These strategies proved to be UV‐B radiation dose dependent. The avoidance strategy is triggered early under high UV‐B radiation in Legacy. Moreover, the rapid metabolic reprogramming capacity of this cultivar, in contrast to Bluegold, seems to be the most relevant contribution to its UV‐B stress‐coping strategy.     

Transcriptome-wide association study reveals two genes that influence mismatch negativity

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Functional structure and diversity of invertebrate communities in a glacierised catchment of the tropical Andes

1. In many mountainous areas, glaciers feed streams characterised by harsh environmental conditions, such as low water temperature, high turbidity, low channel stability, and high temporal variability in flow. Additionally, in many glacierised catchments, the mixture of streams arising from different water sources (glacier melt, groundwater, rainfall) generates high levels of environmental heterogeneity, which enhance species turnover rates and increase regional diversity.
2. Studies from mainly temperate regions have revealed some consistent patterns: a predominance of traits adaptive to harsh environmental conditions and reduced functional diversity with increased glaciality, both strongly related to environmental filtering. Here, we investigated variation in functional structure and diversity between macroinvertebrate communities from 15 stream sites, with different water sources (five glacier-fed, five groundwater-fed, and five mixed source) and level of glacier influence, in a glacierised catchment in the Ecuadorian Andes.
3. Our results revealed functional differences between communities inhabiting the different stream types. As found in temperate regions, high levels of glaciality were associated with an increase of small-sized taxa that do not swim but are temporarily attached to or burrow in the substrate, have a flying-adult stage, and feed by collecting–gathering. Similarly, we found a general decrease in functional diversity at sites with higher glacier influence. A null modelling approach suggested that in some of our glacier-fed sites, environmental filtering may be the main driver of community assembly, whereas other mechanisms, mainly regional (such as dispersal), but also local (such as intraspecific competition), may gain importance as glacier influence decreases.
4. Assemblage composition in streams in tropical glacierised catchments may be driven by both local and regional processes that generate a gradient of decreasing functional diversity with stronger glacier influence. However, lack of knowledge of relevant traits for taxa in tropical glacierised streams currently poses a substantial obstacle to predicting changes likely to arise from global warming and glacier melt in this region.

     

Mode of action of natural and synthetic drugs against Trypanosoma cruzi and their interaction with the mammalian host

Current knowledge of the biochemistry of Trypanosoma cruzi has led to the development of new drugs and the understanding of their mode of action. Some trypanocidal drugs such as nifurtimox and benznidazole act through free radical generation during their metabolism. T. cruzi is very susceptible to the cell damage induced by these metabolites because enzymes scavenging free radicals are absent or have very low activities in the parasite. Another potential target is the biosynthetic pathway of glutathione and trypanothione, the low molecular weight thiol found exclusively in trypanosomatids. These thiols scavenge free radicals and participate in the conjugation and detoxication of numerous drugs. Inhibition of this key pathway could render the parasite much more susceptible to the toxic action of drugs such as nifurtimox and benznidazole without affecting the host significantly. Other drugs such as allopurinol and purine analogs inhibit purine transport in T. cruzi, which cannot synthesize purines de novo. Nitroimidazole derivatives such as itraconazole inhibit sterol metabolism. The parasite's respiratory chain is another potential therapeutic target because of its many differences with the host enzyme complexes. The pharmacological modulation of the host's immune response against T. cruzi infection as a possible chemotherapeutic target is discussed. A large set of chemicals of plant origin and a few animal metabolites active against T. cruzi are enumerated and their likely modes of action are briefly discussed.     

Language Ideology: The Case of Spanish in Departments of Foreign Languages

In this article we investigate language ideology in a department of Spanish. We are concerned with examining the acquisition and transmission of linguistic culture in departments of foreign languages within university settings and the ways in which views about non-English languages that are part of the American cultural dialogue are maintained and nurtured by educational institutions. Using long-term participant-observation data and focused interviews, we contend that foreign language departments in U.S. colleges and universities, although involved in a nonhegemonic practice—that is, in the teaching of non-English languages—are nevertheless working in concert with deeply held American ideologies about bilingualism and monolingualism.