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991.
Claudio Hidalgo-Cantabrana Borja Sánchez Pablo álvarez-Martín Patricia López Noelia Martínez-álvarez Michele Delley Marc Martí Encarna Varela Ana Suárez María Antolín Francisco Guarner Bernard Berger Patricia Ruas-Madiedo Abelardo Margolles 《Applied and environmental microbiology》2015,81(23):7960-7968
Exopolysaccharides (EPS) are extracellular carbohydrate polymers synthesized by a large variety of bacteria. Their physiological functions have been extensively studied, but many of their roles have not yet been elucidated. We have sequenced the genomes of two isogenic strains of Bifidobacterium animalis subsp. lactis that differ in their EPS-producing phenotype. The original strain displays a nonmucoid appearance, and the mutant derived thereof has acquired a mucoid phenotype. The sequence analysis of their genomes revealed a nonsynonymous mutation in the gene Balat_1410, putatively involved in the elongation of the EPS chain. By comparing a strain from which this gene had been deleted with strains containing the wild-type and mutated genes, we were able to show that each strain displays different cell surface characteristics. The mucoid EPS synthesized by the strain harboring the mutation in Balat_1410 provided higher resistance to gastrointestinal conditions and increased the capability for adhesion to human enterocytes. In addition, the cytokine profiles of human peripheral blood mononuclear cells and ex vivo colon tissues suggest that the mucoid strain could have higher anti-inflammatory activity. Our findings provide relevant data on the function of Balat_1410 and reveal that the mucoid phenotype is able to alter some of the most relevant functional properties of the cells. 相似文献
992.
993.
Do Insectivorous Birds use Volatile Organic Compounds from Plants as Olfactory Foraging Cues? Three Experimental Tests
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![点击此处可从《Ethology : formerly Zeitschrift fur Tierpsychologie》网站下载免费的PDF全文](/ch/ext_images/free.gif)
Tuuli‐Marjaana Koski Toni Laaksonen Elina Mäntylä Suvi Ruuskanen Tao Li Patricia Sarai Girón‐Calva Liisa Huttunen James D. Blande Jarmo K. Holopainen Tero Klemola 《Ethology : formerly Zeitschrift fur Tierpsychologie》2015,121(12):1131-1144
Some insectivorous birds orient towards insect‐defoliated trees even when they do not see the foliar damage or the herbivores. There are, however, only a few studies that have examined the mechanisms behind this foraging behaviour. Previous studies suggest that birds can use olfactory foraging cues (e.g. volatile organic compounds (VOCs) emitted by defoliated plants), indirect visual cues or a combination of the two sensory cues. VOCs from insect‐defoliated plants are known to attract natural enemies of herbivores, and researchers have hypothesized that VOCs could also act as olfactory foraging cues for birds. We conducted three experiments across a range of spatial scales to test this hypothesis. In each experiment, birds were presented with olfactory cues and their behavioural responses or foraging outcomes were observed. In the first experiment, two different VOC blends, designed to simulate the volatile emissions of mountain birch (Betula pubescens ssp. czerepanovii) after defoliation by autumnal moth (Epirrita autumnata) larvae, were used in behavioural experiments in aviaries with pied flycatchers (Ficedula hypoleuca). The second experiment was a field‐based trial of bird foraging efficiency; the same VOC blends were applied to mountain birches, silver birches (B. pendula) and European white birches (B. pubescens) with plasticine larvae attached to the trees to serve as artificial prey for birds and provide a means to monitor predation rate. In the third experiment, the attractiveness of silver birch saplings defoliated by autumnal moth larvae versus intact controls was tested with great tits (Parus major) and blue tits (Cyanistes caeruleus) in an aviary. Birds did not orient towards either artificial or real trees with VOC supplements or towards herbivore‐damaged saplings when these saplings and undamaged alternatives were hidden from view. These findings do not support the hypothesis that olfactory foraging cues are necessary in the attraction of birds to herbivore‐damaged trees. 相似文献
994.
Tadpoles risk attack from both aquatic and aerial predators. We investigated how body size and group size influenced the behaviour of tadpoles before and during a predatory attack from above to test the predictions of the theoretical economic escape model. We examined escape (swimming) response of small and large Cuban tree frog (Osteopilus septentrionalis) tadpoles kept under three density treatments and predicted that increased group size, body size and depth in the water column would all reduce perceived risk and, therefore, escape responses to simulated predation. Compared with the lower density groups, tadpoles in higher density groups moved shorter distances, and many individuals did not even move away in response to being touched. Contrary to our predictions based on the economic escape model, smaller tadpoles (which should be more vulnerable to a greater suite of predators) were less reactive than larger tadpoles, and this result may reflect different costs of escape. Finally, although tadpoles might be exposed to a wider range of predator species (aerial as well as aquatic predators), we found no effect of initial depth on escape responses. In conclusion, it appears that the main benefit of increased group density in O. septentrionalis tadpoles is likely to be predator dilution, and that variation in densities of tadpoles influences the escape behaviour of individual tadpoles, regardless of tadpole size. 相似文献
995.
Gemma L. Holliday Amos Bairoch Pantelis G. Bagos Arnaud Chatonnet David J. Craik Robert D. Finn Bernard Henrissat Gerard Manning Nozomi Nagano Claire O'Donovan Neil D. Rawlings Milton Saier Ramanathan Sowdhamini Michael Spedding Narayanaswamy Srinivasan Gert Vriend Patricia C. Babbitt Alex Bateman 《Proteins》2015,83(6):1005-1013
As the volume of data relating to proteins increases, researchers rely more and more on the analysis of published data, thus increasing the importance of good access to these data that vary from the supplemental material of individual articles, all the way to major reference databases with professional staff and long‐term funding. Specialist protein resources fill an important middle ground, providing interactive web interfaces to their databases for a focused topic or family of proteins, using specialized approaches that are not feasible in the major reference databases. Many are labors of love, run by a single lab with little or no dedicated funding and there are many challenges to building and maintaining them. This perspective arose from a meeting of several specialist protein resources and major reference databases held at the Wellcome Trust Genome Campus (Cambridge, UK) on August 11 and 12, 2014. During this meeting some common key challenges involved in creating and maintaining such resources were discussed, along with various approaches to address them. In laying out these challenges, we aim to inform users about how these issues impact our resources and illustrate ways in which our working together could enhance their accuracy, currency, and overall value. Proteins 2015; 83:1005–1013. © 2015 The Authors. Proteins: Structure, Function, and Bioinformatics Published by Wiley Periodicals, Inc. 相似文献
996.
M. Patricia Velasco-de León Diego E. Lozano-Carmona Miguel A. Flores Barragan O. Daniel Martínez Paniagua A. Silva Pineda 《Historical Biology》2015,27(3-4):366-373
This paper reports two new species of Ginkgoales collected from the Cañada Alejandro and Río Ñumi (Zorrillo and Zorrillo–Taberna Undifferentiated Formations, Middle Jurassic). Thirty-one fossils were selected and compared with 14 species from different localities. A numerical taxonomy analysis was performed through a data matrix formed by 15 characters. Results indicate an important speciation process of the Ginkgoales during the Jurassic in the southeast of Mexico. New evidence suggests the existence of eight species from the Ginkgoidium Yokoyama, 1889 and Sphenobaiera (Florin) Harris and Millington, 1974 genera and two new species Ginkgoidiumnundichii Velasco-de León, Lozano-Carmona, Flores, Martínez and Silva and Sphenobaieramixteca Velasco-de León, Lozano-Carmona, Flores, Martínez and Silva 相似文献
997.
998.
999.
1000.
THO2, a core member of the THO/TREX complex,is required for microRNA production in Arabidopsis
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![点击此处可从《The Plant journal : for cell and molecular biology》网站下载免费的PDF全文](/ch/ext_images/free.gif)
Anchilie G. Francisco‐Mangilet Patricia Karlsson Myung‐Hee Kim Hyeon Ju Eo Sung Aeong Oh Jeong Hoe Kim Franceli Rodrigues Kulcheski Soon Ki Park Pablo Andrés Manavella 《The Plant journal : for cell and molecular biology》2015,82(6):1018-1029
The THO/TREX complex mediates transport of nascent mRNAs from the nucleus towards the cytoplasm in animals, and has a role in small interfering RNA‐dependent processes in plants. Here we describe five mutant alleles of Arabidopsis thaliana THO2, which encodes a core subunit of the plant THO/TREX complex. tho2 mutants present strong developmental defects resembling those in plants compromised in microRNA (miRNA) activity. In agreement, not only were the levels of siRNAs reduced in tho2 mutants, but also those of mature miRNAs. As a consequence, a feedback mechanism is triggered, increasing the amount of miRNA precursors, and finally causing accumulation of miRNA‐targeted mRNAs. Yeast two‐hybrid experiments and confocal microscopy showed that THO2 does not appear to interact with any of the known miRNA biogenesis components, but rather with the splicing machinery, implying an indirect role of THO2 in small RNA biogenesis. Using an RNA immunoprecipitation approach, we found that THO2 interacts with miRNA precursors, and that tho2 mutants fail to recruit such precursors into the miRNA‐processing complex, explaining the reduction in miRNA production in this mutant background. We also detected alterations in the splicing pattern of genes encoding serine/arginine‐rich proteins in tho2 mutants, supporting a previously unappreciated role of the THO/TREX complex in alternative splicing. 相似文献