Study of potential binding of biologically important sugars with a dinuclear cobalt(II) complex

The investigation of the sugar–metal ion interactions remains one of the main objectives of carbohydrate coordination chemistry because the interactions between metal ions and carbohydrates are involved in many biochemical processes. The potential binding interaction between a five-coordinate dinuclear cobalt(II) complex, Na₂[Co₂(tcdc)(μ-OAc)] (1) [Na₅tcdc = Sodium-N,N,N′,N′-tetrakis(sodium carboxylate methyl)-2,6-diaminocresolate] and biologically important sugar substrates (d-glucose, d-xylose, and d-mannose) has been studied. In alkaline media, the complex 1 shows an excellent chelating ability toward these sugar substrates. A combined approach of FTIR and UV–vis spectroscopic investigations shows that the complex forms a 1:1 complex/substrate-bound product. UV–vis spectra indicate a significant blue-shift of the absorption maximum of metal complex during carbohydrate coordination highlighting the sugar binding ability of complex 1. The apparent binding constants of the substrate-bound cobalt(II) complexes have been determined from the UV–vis titration experiments.     

Structural characterization and study of immunoenhancing properties of heteroglycan isolated from a somatic hybrid mushroom (PfloVv1aFB) of Pleurotus florida and Volvariella volvacea

A water soluble polysaccharide isolated from the hot aqueous extract of the fruit bodies of the somatic hybrid mushroom (PfloVv1aFB), raised through protoplast fusion between the strains of Pleurotus florida and Volvariella volvacea was found to consist of d-glucose, d-galactose, and d-mannose in a molar ratio of nearly 4:1:1 and showed macrophage, splenocyte, and thymocyte activation. On the basis of sugar analysis, methylation analysis, periodate oxidation, and NMR studies (¹H, ¹³C, DEPT-135, DQF-COSY, TOCSY, NOESY, ROESY, HMQC and HMBC), the structure of the repeating unit of the polysaccharide was established as:     

Whole Genome Analysis of Leptospira licerasiae Provides Insight into Leptospiral Evolution and Pathogenicity

The whole genome analysis of two strains of the first intermediately pathogenic leptospiral species to be sequenced (Leptospira licerasiae strains VAR010 and MMD0835) provides insight into their pathogenic potential and deepens our understanding of leptospiral evolution. Comparative analysis of eight leptospiral genomes shows the existence of a core leptospiral genome comprising 1547 genes and 452 conserved genes restricted to infectious species (including L. licerasiae) that are likely to be pathogenicity-related. Comparisons of the functional content of the genomes suggests that L. licerasiae retains several proteins related to nitrogen, amino acid and carbohydrate metabolism which might help to explain why these Leptospira grow well in artificial media compared with pathogenic species. L. licerasiae strains VAR010^T and MMD0835 possess two prophage elements. While one element is circular and shares homology with LE1 of L. biflexa, the second is cryptic and homologous to a previously identified but unnamed region in L. interrogans serovars Copenhageni and Lai. We also report a unique O-antigen locus in L. licerasiae comprised of a 6-gene cluster that is unexpectedly short compared with L. interrogans in which analogous regions may include >90 such genes. Sequence homology searches suggest that these genes were acquired by lateral gene transfer (LGT). Furthermore, seven putative genomic islands ranging in size from 5 to 36 kb are present also suggestive of antecedent LGT. How Leptospira become naturally competent remains to be determined, but considering the phylogenetic origins of the genes comprising the O-antigen cluster and other putative laterally transferred genes, L. licerasiae must be able to exchange genetic material with non-invasive environmental bacteria. The data presented here demonstrate that L. licerasiae is genetically more closely related to pathogenic than to saprophytic Leptospira and provide insight into the genomic bases for its infectiousness and its unique antigenic characteristics.     

Site-specific one-pot dual labeling of DNA by orthogonal cycloaddition chemistry

Bioorthogonal reactions are of high interest in biosciences as they allow the introduction of fluorescent dyes, affinity tags, or other unnatural moieties into biomolecules. The site-specific attachment of two or more different labels is particularly demanding and typically requires laborious multistep syntheses. Here, we report that the most popular cycloaddition in bioconjugation, the copper-catalyzed azide-alkyne click reaction (CuAAC), is fully orthogonal to the inverse electron-demand Diels-Alder reaction (DAinv). We demonstrate that both bioorthogonal reactions can be conducted concurrently in a one-pot reaction by just mixing all components. Orthogonality has been established even for highly reactive trans-cyclooctene-based dienophiles (with rate constants up to 380 000 M(-1) s(-1)). These properties allow for the convenient site-specific one-step preparation of oligonucleotide FRET probes and related reporters needed in cellular biology and biophysical chemistry.     

Effect of Chelate-Assisted Hexavalent Chromium on Physiological Changes,Biochemical Alterations,and Chromium Bioavailability in Crop Plants—An In Vitro Phytoremediation Approach

This study revealed heavy metal–induced physiological and biochemical alterations in crop seedlings by supplementing chelating agents in the nutrient solution. Hexavalent chromium (Cr⁺⁶) induces several toxic effects in hydroponically grown rice, wheat, and green gram seedlings. A noticeable decrease was observed in root length, shoot length, biomass content, and chlorophyll biosynthesis of the seedlings grown in the nutrient solutions supplemented with Cr⁺⁶ at 100 μM. The seedling growth was stimulated with supplement of chelating agents such as EDTA, DTPA, and EDDHA. An increase in proline content was noticed with the application of Cr⁺⁶ (100 μM) in nutrient solutions. Stimulated activities of antioxidant enzymes such as catalase and peroxidase were noticed with increasing concentrations of chromium. Cr bioaccumulation was significantly high in roots of seedlings treated with Cr⁺⁶ at 100 μM in nutrient solution. Shoot translocation of Cr as depicted by transportation index (Ti) values for different crops were enhanced with the application of chelating agents. The total accumulation rate (TAR) for Cr was enhanced with the supplementation of DTPA in rice and wheat, whereas the application of EDDHA was found effective for increasing the accumulation rate of Cr in green gram seedlings. This study demonstates the role of chelating agents in lessening the toxic effects of Cr⁺⁶. The chelating agents supplemented with Cr⁺⁶ in the culture medium enhanced the Cr bioavailability in plants.     

Effects of essential oils on methane production and fermentation by, and abundance and diversity of, rumen microbial populations

Five essential oils (EOs), namely, clove oil (CLO), eucalyptus oil (EUO), garlic oil (GAO), origanum oil (ORO), and peppermint oil (PEO), were tested in vitro at 3 different doses (0.25, 0.50, and 1.0 g/liter) for their effect on methane production, fermentation, and select groups of ruminal microbes, including total bacteria, cellulolytic bacteria, archaea, and protozoa. All the EOs significantly reduced methane production with increasing doses, with reductions by 34.4%, 17.6%, 42.3%, 87%, and 25.7% for CLO, EUO, GAO, ORO, and PEO, respectively, at 1.0 g/liter compared with the control. However, apparent degradability of dry matter and neutral detergent fiber also decreased linearly with increasing doses by all EOs except GAO. The concentrations of total volatile fatty acids were not affected by GAO, EUO, or PEO but altered linearly and quadratically by CLO and ORO, respectively. All the EOs also differed in altering the molar proportions of acetate, propionate, and butyrate. As determined by quantitative real-time PCR, all the EOs decreased the abundance of archaea, protozoa, and major cellulolytic bacteria (i.e., Fibrobacter succinogenes, Ruminococcus flavefaciens, and R. albus) linearly with increasing EO doses. On the basis of denaturing gradient gel electrophoresis analysis, different EOs changed the composition of both archaeal and bacterial communities to different extents. The Shannon-Wiener diversity index (H') was reduced for archaea by all EOs in a dose-dependent manner but increased for bacteria at low and medium doses (0.25 and 0.50 g/liter) for all EOs except ORO. Due to the adverse effects on feed digestion and fermentation at high doses, a single EO may not effectively and practically mitigate methane emission from ruminants unless used at low doses in combinations with other antimethanogenic compounds.     

Fluorescence modulation of 1,7‐bis(4‐hydroxy‐3‐methoxyphenyl)‐1,6‐heptadiene‐3,5‐dione by silver nanoparticles and its possible analytical application

The effects of silver nanoparticles on the photophysical properties of 1,7‐bis(4‐hydroxy‐3‐methoxyphenyl)‐1,6‐heptadiene‐3,5‐dione, popularly known as curcumin, have been investigated using optical absorption and fluorescence techniques. Although absorption spectroscopy suggests a ground‐state complex formation, fluorescence quenching data confirms a simultaneous static and dynamic quenching, inferring ground as well as excited‐state complex formation. The recovery of fluorescence quenching of the curcumin–silver nanoparticle complex in the presence of ascorbic acid or uric acid emphasizes a strong interaction between the silver nanoparticles and ascorbic acid/uric acid, suggesting that fluorescence recovery after the quenching of curcumin–silver nanoparticle complexes has potential for ascorbic acid or uric acid assay development. Copyright © 2011 John Wiley & Sons, Ltd.     

Sedimentation and belowground carbon accumulation rates in mangrove forests that differ in diversity and land use: a tale of two mangroves

Increased sea level is the climate change effect expected to have the greatest impact on mangrove forest survival. Mangroves have survived extreme fluctuations in sea level in the past through sedimentation and belowground carbon (C) accumulation, yet it is unclear what factors may influence these two parameters. We measured sedimentation, vertical accretion, and belowground C accumulation rates in mangrove forests from the Republic of Palau and Vietnam to examine how diversity (high-Vietnam vs. low-Palau), land use, and location (fringe vs. interior) might influence these parameters. Land use in this study was identified as disturbance and restoration for all mangrove forests sampled in Palau and Vietnam, respectively. Vertical accretion rates were significantly greater in Vietnam (2.44 ± 1.38 cm/year) than Palau mangrove forests (0.47 ± 0.08 cm/year; p < 0.001, F_1,17 = 24.96). Vertical accretion rates were positively correlated to diversity (R = 0.43, p < 0.05). However, stronger correlations of accretion to bulk density (R = 0.64, p < 0.01) and significantly higher bulk densities in Vietnamese (0.67 ± 0.04 g/cm³) than Palau mangroves (0.30 ± 0.03 g/cm³; p < 0.001, F_1,17 = 54.4) suggests that suspended sediments played a greater role in mangrove forest floor maintenance relative to sea level rise. Average vertical accretion rates were similar between naturally colonized (1.01 ± 0.10 cm/year) and outplanted sites (1.06 ± 0.05 cm/year) and between fringe (1.06 ± 0.12 cm/year) and interior mangrove (0.99 ± 0.09 cm/year) in Vietnam. In Palau, vertical accretion rates did not differ between disturbed (0.42 ± 0.11 cm/year) and undisturbed (0.51 ± 0.13 cm/year) mangrove forests and were higher in fringe (0.61 ± 0.15 cm/year) than interior sites (0.33 ± 0.09 cm/year; p = 0.1, F_1,7 = 3.45). Belowground C accumulation rates did not differ between any factors examined. C accumulation rates (69–602 gC/m²/year) were similar to those reported elsewhere in the literature and suggest that intact coastal ecosystems play an important role in the global C cycle, sequestering C at rates that are 10–20× greater than upland forests. Assuming vertical accretion rates measured using ²¹⁰Pb are an effective proxy for surface elevation, the Vietnamese and Palauan mangroves appear to be keeping up with current rates of sea level rise.     

DFT analysis of the electronic structure of Fe(IV) species active in nitrene transfer catalysis: influence of the coordination sphere

Nitrene transfer reactions to various hydrocarbon molecules can be efficiently catalyzed by Fe complexes through a mechanism reminiscent of the oxygen transfer function of oxygenase enzymes. Such enzymes exhibit a high-valent iron oxo Fe(IV)?=?O as the active species, and it has also been proposed that an analogous species, i.e., Fe(IV)?=?NR (NR being the nitrene group) is responsible for the nitrene transfer activity. We describe here the influence of the Fe(IV) coordination sphere on some key parameters for nitrene transfer efficacy, such as the spin state of the Fe(IV) cation, the electronic affinity, and the bond dissociation energy of the NHR moiety. We explore here the electronic properties of Fe(IV)?=?NTs (NTs?=?tolylsulfonylimido group) mononuclear complexes with ligands involving phenolate and nitrogen donor groups, as catalytic properties with such ligands have been found to be quite promising. Six tetradentate ligands were studied, which derive from three different scaffolds: 2-methylenepyridine-N,N-bis(2-methylene-4,6-dichlorophenol) and 2-methylenepyridine-N,N-bis(2-methylene-4,6-dimethylphenol), N,N-dimethyl-N’,N’-bis(2-methylene-4,6-dichlorophenol) ethylenediamine, and N,N-dimethyl-N’,N’- bis(2-methylene-4,6-dimethylphenol) ethylenediamine, N,N’-bis(2-methylene-4,6-dichlorophenol)-N,N’-dimethyl-1,2-diaminoethane and N,N’-bis(2-methylene-4,6-dimethylphenol)-N,N’-dimethyl-1,2-diaminoethane. Thanks to thorough DFT computations, we present some rationalization of the electronic properties of the resulting Fe(IV)?=?NTs complexes in relation to their coordination sphere and compare them to other Fe(IV) nitrene active species. We show in particular the important role of the anionic character and strong π-donation of the phenolate groups.