The Staphylococcus aureus RNome and its commitment to virulence

Staphylococcus aureus is a major human pathogen causing a wide spectrum of nosocomial and community-associated infections with high morbidity and mortality. S. aureus generates a large number of virulence factors whose timing and expression levels are precisely tuned by regulatory proteins and RNAs. The aptitude of bacteria to use RNAs to rapidly modify gene expression, including virulence factors in response to stress or environmental changes, and to survive in a host is an evolving concept. Here, we focus on the recently inventoried S. aureus regulatory RNAs, with emphasis on those with identified functions, two of which are directly involved in pathogenicity.     

Brucella suis histidinol dehydrogenase: Synthesis and inhibition studies of substituted N-L-histidinylphenylsulfonyl hydrazide

Histidinol dehydrogenase (HDH, EC EC1.1.1.23) catalyses the final step in the biosynthesis of histidine and constitutes an attractive novel target for the development of new agents against the pathogenous, bacteria Brucella suis. A small library of new HDH inhibitors based on the L-histidinylphenylsulfonyl hydrazide scaffold has been synthesized and their inhibitory activity investigated. The obtained results demonstrate that modification of the group between the histidinyl moiety and the phenyl ring constitutes an important structural factor for the design of effective HDH inhibitors.     

Evaluating and modeling biogas production from municipal fat, oil, and grease and synthetic kitchen waste in anaerobic co-digestions

The feasibility of using synthetic kitchen waste (KW) and fat, oil, and grease (FOG) as co-substrates in the anaerobic digestion of waste activated sludge (WAS) was investigated using two series of biochemical methane potential (BMP) tests. Ranges of ideal substrate to inoculum (S/I) ratio were determined for the FOG (0.25-0.75) and KW (0.80-1.26) as single substrates in the first experiment. The second experiment, which estimated the methane production performances of FOG and KW as co-substrates for WAS co-digestion, was conducted based on the optimal parameters selected from the results of the first experiment. Results indicated that co-digestions with FOG and KW enhanced methane production from 117±2.02 mL/gTVS (with only WAS) to 418±13.7 mL/gTVS and 324±4.11 mL/gTVS, respectively. FOG exhibited more biogas production than KW as co-substrate. Non-linear regression results showed that co-substrate addition shortened the lag phases of organic biodegradation from 81.8 (with only WAS) to 28.3 h with FOG and 3.90 h with KW.     

Bryophytes display allelopathic interactions with tree species in native forest ecosystems

Bryophytes are widespread in terrestrial ecosystems but little is known about their influence on vascular species. Water‐soluble leachates (0%, 1%, 5%, 10% concentration) derived from 18 species of bryophytes (mosses 11 species; liverworts 7 species) were tested on the germination and seedling growth of Lactuca sativa and two common trees Melicytus ramiflorus (Violaceae) and Fuchsia excorticata (Onagraceae) in southern New Zealand forests. Bryophyte water soluble extracts (BWSE) have minor impact on seed germination of Lactuca, stimulatory effects on radical growth at low (1%) concentrations and inhibitory effects at higher concentrations (5–10%). For Melicytus the BWSE had variable effects, with evidence of strong stimulatory (Dendrohypopterygium filiculiforme) and inhibitory (Lepidozia concinna) effects on germination, but generally inhibited radical growth. BWSE at all test concentrations consistently inhibit both germination and seedling radicle growth in Fuchsia. The toxicity effect of water‐soluble leachates varies significantly between bryophyte species but not consistently between mosses and liverworts. Bryophyte species exhibiting strongest inhibition effects under control conditions were associated with significantly reduced densities of broadleaved tree seedlings in forest ecosystems. Our results demonstrate that some bryophyte species via allelopathic interactions can inhibit seedling establishment and growth of forest trees. This mechanism provides an additional factor constraining the spatial distribution of the regeneration niche in forest communities.     

Spectrum of mutations in Lebanese patients with phenylalanine hydroxylase deficiency

Phenylketonuria is an autosomal recessive inborn error of metabolism resulting from phenylalanine hydroxylase deficiency. Genetic basis of phenylalanine hydroxylase deficiency has been reported in various European and Asian countries with few reports available in Arab populations of the Mediterranean region. This is the first pilot study describing phenotype and genotype of 23 Lebanese patients with phenylketonuria. 48% of the patients presented mainly with neurological signs at a mean age of 2 years 9 months, as newborn screening is not yet a nationwide policy. 56.5% of the patients had classical phenylketonuria. Thirteen different mutations were identified: splice site 52%, frameshift 31%, and missense 17% with no nonsense mutations. IVS10-11G>A was found mainly in Christians at high relative frequency whereas Muslims carried the G352fs and R261Q mutations. A rare splice mutation IVS7+1G>T, not described before, was identified in the homozygous state in one family with moderate phenylketonuria phenotype. Genotype–phenotype correlation using Guldberg arbitrary value method showed high consistency between predicted and observed phenotypes. Calculated homozygosity rate was 0.07 indicating the genetic heterogeneity in our patients. Our findings underline the admixture of different ethnicities and religions in Lebanon that might help tracing back the PAH gene flux history across the Mediterranean region.     

Trichostatin A treatment of cloned mouse embryos improves constitutive heterochromatin remodeling as well as developmental potential to term

Background  

Genome reprogramming in early mouse embryos is associated with nuclear reorganization and particular features such as the peculiar distribution of centromeric and pericentric heterochromatin during the first developmental stage. This zygote-specific heterochromatin organization could be observed both in maternal and paternal pronuclei after natural fertilization as well as in embryonic stem (ES) cell nuclei after nuclear transfer suggesting that this particular type of nuclear organization was essential for embryonic reprogramming and subsequent development.     

Growth reactions of Pinus sylvestris L. and Quercus pubescens Willd. to drought years at a xeric site in Valais, Switzerland

In Valais, an inner-Alpine dry valley in Switzerland, low-elevation Scots pine (Pinus sylvestris L.) forests are changing. While pine shows high mortality rates, deciduous species, in particular pubescent oak (Quercus pubescens Willd.), are becoming more abundant. We hypothesise that increasing drought and the species-specific drought tolerance are key factors in these processes. In this study, the growth reaction to drought years of pine and oak growing at a xeric site in Valais was analysed using dendrochronological and wood anatomical methods. Congruent with theoretical expectations, the tree-ring widths of both species, the mean lumen area of earlywood vessels in oak and the number of tracheids in a radial row in pine decreased in response to dry conditions. However, both species also showed reactions deviating from those known from mesic sites: In oak, the mean lumen area of latewood vessels increased in drought years. In pine, in the driest year of the period (1976), the mean radial diameter increased in latewood and decreased only slightly in earlywood. These results emphasises that the process of wood formation and cell functionality at xeric sites is not completely understood yet. Both species seem to have difficulties to adapt the size of their water-conducting cells to strongly reduced water availability in drought years. Additionally, the cell number is strongly reduced. Thus it remains unclear if both species can maintain sufficient water transport under increasingly dry conditions.     

Trafficking of Leishmania donovani promastigotes in non-lytic compartments in neutrophils enables the subsequent transfer of parasites to macrophages

Inoculation of Leishmania ( L.) spp. promastigotes in the dermis of mammals by blood-feeding sand flies can be accompanied by the rapid recruitment of neutrophils, inflammatory monocytes and dendritic cells. Despite the presence of these lytic leucocytes, parasitism is efficiently established. We show here that Leishmania donovani promastigotes are targeted to two different compartments in neutrophils. The compartments harbouring either damaged or non-damaged parasites were characterized at the electron microscopy (EM) level using the glucose 6-phosphatase cytochemistry and endosome–phagosome fusion assays. One involves the contribution of lysosomes leading to the formation of highly lytic compartments where parasites are rapidly degraded. The other is lysosome-independent and involves the contribution of a compartment displaying some features of the endoplasmic reticulum (ER) where parasites are protected from degradation. Using genetically modified parasites, we show that the promastigote surface lipophosphoglycan (LPG) is required to inhibit lysosome fusion and maintain parasites in neutrophil compartments displaying ER features. L. donovani -harbouring neutrophils that eventually enter apoptosis can be phagocytosed by macrophages enabling the stealth entry of parasites into their final replicative host cells. Thus, the ability of L. donovani to avoid trafficking into lysosomes-derived compartments in short-lived neutrophils constitutes a key process for the subsequent establishment of long-term parasitism.     

High Fat Diet Induces Liver Steatosis and Early Dysregulation of Iron Metabolism in Rats

This paper is dedicated to the memory of our wonderful colleague Professor Alfredo Colonna, who passed away the same day of its acceptance. Fatty liver accumulation, inflammatory process and insulin resistance appear to be crucial in non-alcoholic fatty liver disease (NAFLD), nevertheless emerging findings pointed an important role also for iron overload. Here, we investigate the molecular mechanisms of hepatic iron metabolism in the onset of steatosis to understand whether its impairment could be an early event of liver inflammatory injury. Rats were fed with control diet or high fat diet (HFD) for 5 or 8 weeks, after which liver morphology, serum lipid profile, transaminases levels and hepatic iron content (HIC), were evaluated. In liver of HFD fed animals an increased time-dependent activity of iron regulatory protein 1 (IRP1) was evidenced, associated with the increase in transferrin receptor-1 (TfR1) expression and ferritin down-regulation. Moreover, ferroportin (FPN-1), the main protein involved in iron export, was down-regulated accordingly with hepcidin increase. These findings were indicative of an increased iron content into hepatocytes, which leads to an increase of harmful free-iron also related to the reduction of hepatic ferritin content. The progressive inflammatory damage was evidenced by the increase of hepatic TNF-α, IL-6 and leptin, in parallel to increased iron content and oxidative stress. The major finding that emerged of this study is the impairment of iron homeostasis in the ongoing and sustaining of liver steatosis, suggesting a strong link between iron metabolism unbalance, inflammatory damage and progression of disease.