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61.
Anna Reuleaux Heather Richards Terence Payet Pascal Villard Matthias Waltert Nancy Bunbury 《Ostrich》2014,85(3):245-253
Feeding ecology is an important factor for the survival of a species and knowledge of its parameters is a prerequisite for successful conservation work. In this study we describe the feeding ecology of the endemic Seychelles Black Parrot Coracopsis barklyi on Praslin, Seychelles, the only island on which this parrot is resident. We compared two methods to evaluate feeding choices: incidental observations and feeding walks on 25 transects in all habitat types. Black parrots fed on 46 different species, bringing the total number of known food plants to 53 species. They predominantly consumed endemic and native species (58% of observed feeding bouts), mainly their fruit pulp (in 68% of feeding bouts), followed by buds (15%) and seeds (37%) with occasional observations of leaves, bark and scale insects. The incidental method rendered many more observed bouts than the transect approach and the ratios of consumed species differed between methods but the transect results are regarded as more representative. The incidental method is not suitable for quantitative conclusions but complements the transect method, providing information about rarely occurring feeding events. 相似文献
62.
André Eggen Mathieu Gautier Alain Billaut élisabeth Petit Hélène Hayes Pascal Laurent Catherine Urban Martha Pfister-Genskow Ken Eilertsen Michael D Bishop 《遗传、选种与进化》2001,33(5):543-548
A bovine artificial chromosome (BAC) library of 105 984 clones has been constructed in the vector pBeloBAC11 and organized in 3-dimension pools and high density membranes for screening by PCR and hybridization. The average insert size, determined after analysis of 388 clones, was estimated at 120 kb corresponding to a four genome coverage. Given the fact that a male was used to construct the library, the probability of finding any given autosomal and X or Y locus is respectively 0.98 and 0.86. The library was screened for 164 microsatellite markers and an average of 3.9 superpools was positive for each PCR system. None of the 50 or so BAC clones analysed by FISH was chimeric. This BAC library increases the international genome coverage for cattle to around 28 genome equivalents and extends the coverage of the ruminant genomes available at the Inra resource center to 15 genome equivalents. 相似文献
63.
Characterization of a C-C bond hydrolase from Sphingomonas wittichii RW1 with novel specificities towards polychlorinated biphenyl metabolites
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Seah SY Ke J Denis G Horsman GP Fortin PD Whiting CJ Eltis LD 《Journal of bacteriology》2007,189(11):4038-4045
Sphingomonas wittichii RW1 degrades chlorinated dibenzofurans and dibenzo-p-dioxins via meta cleavage. We used inverse PCR to amplify dxnB2, a gene encoding one of three meta-cleavage product (MCP) hydrolases identified in the organism that are homologues of BphD involved in biphenyl catabolism. Purified DxnB2 catalyzed the hydrolysis of 8-OH 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate (HOPDA) approximately six times faster than for HOPDA at saturating substrate concentrations. Moreover, the specificity of DxnB2 for HOPDA (k(cat)/K(m) = 1.2 x 10(7) M(-1) s(-1)) was about half that of the BphDs of Burkholderia xenovorans LB400 and Rhodococcus globerulus P6, two potent polychlorinated biphenyl (PCB)-degrading strains. Interestingly, DxnB2 transformed 3-Cl and 4-OH HOPDAs, compounds that inhibit the BphDs and limit PCB degradation. DxnB2 had a higher specificity for 9-Cl HOPDA than for HOPDA but a lower specificity for 8-Cl HOPDA (k(cat)/K(m) = 1.7 x 10(6) M(-1) s(-1)), the chlorinated analog of 8-OH HOPDA produced during dibenzofuran catabolism. Phylogenetic analyses based on structure-guided sequence alignment revealed that DxnB2 belongs to a previously unrecognized class of MCP hydrolases, evolutionarily divergent from the BphDs although the physiological substrates of both enzyme types are HOPDAs. However, both classes of enzymes have mainly small hydrophobic residues lining the subsite that binds the C-6 phenyl of HOPDA, in contrast to the bulky hydrophobic residues (Phe106, Phe135, Trp150, and Phe197) found in the class II enzymes that prefer substrates possessing a C-6 alkyl. Thr196 and/or Asn203 appears to be an important determinant of specificity for DxnB2, potentially forming hydrogen bonds with the 8-OH substituent. This study demonstrates that the substrate specificities of evolutionarily divergent hydrolases may be useful for degrading mixtures of pollutants, such as PCBs. 相似文献
64.
C Meslin S Mugnier I Callebaut M Laurin G Pascal A Poupon G Goudet P Monget 《PloS one》2012,7(9):e44548
Genes encoding proteins involved in sperm-egg interaction and fertilization exhibit a particularly fast evolution and may participate in prezygotic species isolation [1], [2]. Some of them (ZP3, ADAM1, ADAM2, ACR and CD9) have individually been shown to evolve under positive selection [3], [4], suggesting a role of positive Darwinian selection on sperm-egg interaction. However, the genes involved in this biological function have not been systematically and exhaustively studied with an evolutionary perspective, in particular across vertebrates with internal and external fertilization. Here we show that 33 genes among the 69 that have been experimentally shown to be involved in fertilization in at least one taxon in vertebrates are under positive selection. Moreover, we identified 17 pseudogenes and 39 genes that have at least one duplicate in one species. For 15 genes, we found neither positive selection, nor gene copies or pseudogenes. Genes of teleosts, especially genes involved in sperm-oolemma fusion, appear to be more frequently under positive selection than genes of birds and eutherians. In contrast, pseudogenization, gene loss and gene gain are more frequent in eutherians. Thus, each of the 19 studied vertebrate species exhibits a unique signature characterized by gene gain and loss, as well as position of amino acids under positive selection. Reflecting these clade-specific signatures, teleosts and eutherian mammals are recovered as clades in a parsimony analysis. Interestingly the same analysis places Xenopus apart from teleosts, with which it shares the primitive external fertilization, and locates it along with amniotes (which share internal fertilization), suggesting that external or internal environmental conditions of germ cell interaction may not be the unique factors that drive the evolution of fertilization genes. Our work should improve our understanding of the fertilization process and on the establishment of reproductive barriers, for example by offering new leads for experiments on genes identified as positively selected. 相似文献
65.
66.
Rozenn Le Borgne Pascal Feillard 《The International Journal of Life Cycle Assessment》2001,6(3):167-176
The aim of this article is to show how, at PSA peugeot-citroën, Life Cycle Assessment (LCA) is used as a tool to evaluate the environmental burdens associated with a product, a process or an activity by identifying and quantifying energy, material used and wastes released to the environment. In this paper, the LCA methodology is applied to a practical case study: the comparison of various end-of-life scenarios (recycling versus incineration with or without energy recovery with landfill as a reference) for a polypropylene (PP) bumper skin. All the LCA steps (goal, inventory, impacts assessment, interpretation) are developed in this study. It is shown that in the particular case of PP, incineration with energy recovery is on an environmental point of view between 30 and 60% recycling. However, due to some uncertainties on data quality, the absolute values of the inputs/outputs for the inventory step may not be sufficient to allow strong decision making and the use of the factorial experiments (Taguchi) is then proposed to select the dominant parameters of the study. Strong environmental conclusions can then be drawn from the study. 相似文献
67.
Yu H Tardivo L Tam S Weiner E Gebreab F Fan C Svrzikapa N Hirozane-Kishikawa T Rietman E Yang X Sahalie J Salehi-Ashtiani K Hao T Cusick ME Hill DE Roth FP Braun P Vidal M 《Nature methods》2011,8(6):478-480
Next-generation sequencing has not been applied to protein-protein interactome network mapping so far because the association between the members of each interacting pair would not be maintained in en masse sequencing. We describe a massively parallel interactome-mapping pipeline, Stitch-seq, that combines PCR stitching with next-generation sequencing and used it to generate a new human interactome dataset. Stitch-seq is applicable to various interaction assays and should help expand interactome network mapping. 相似文献
68.
Hammes F Broger T Weilenmann HU Vital M Helbing J Bosshart U Huber P Odermatt RP Sonnleitner B 《Cytometry. Part A》2012,81(6):508-516
Accurate and sensitive online detection tools would benefit both fundamental research and practical applications in aquatic microbiology. Here, we describe the development and testing of an online flow cytometer (FCM), with a specific use foreseen in the field of drinking water microbiology. The system incorporated fully automated sampling and fluorescent labeling of bacterial nucleic acids with analysis at 5-min intervals for periods in excess of 24 h. The laboratory scale testing showed sensitive detection (< 5% error) of bacteria over a broad concentration range (1 × 10(3) -1 × 10(6) cells mL(-1) ) and particularly the ability to track both gradual changes and dramatic events in water samples. The system was tested with bacterial pure cultures as well as indigenous microbial communities from natural water samples. Moreover, we demonstrated the possibility of using either a single fluorescent dye (e.g., SYBR Green I) or a combination of two dyes (SYBR Green I and Propidium Iodide), thus broadening the application possibilities of the system. The online FCM approach described herein has considerable potential for routine and continuous monitoring of drinking water, optimization of specific drinking water processes such as biofiltration or disinfection, as well as aquatic microbiology research in general. 相似文献
69.
Pascal Badiou Rhonda McDougal Dan Pennock Bob Clark 《Wetlands Ecology and Management》2011,19(3):237-256
North American prairie pothole wetlands are known to be important carbon stores. As a result there is interest in using wetland
restoration and conservation programs to mitigate the effects of increasing greenhouse gas concentration in the atmosphere.
However, the same conditions which cause these systems to accumulate organic carbon also produce the conditions under which
methanogenesis can occur. As a result prairie pothole wetlands are potential hotspots for methane emissions. We examined change
in soil organic carbon density as well as emissions of methane and nitrous oxide in newly restored, long-term restored, and
reference wetlands across the Canadian prairies to determine the net GHG mitigation potential associated with wetland restoration.
Our results indicate that methane emissions from seasonal, semi-permanent, and permanent prairie pothole wetlands are quite
high while nitrous oxide emissions from these sites are fairly low. Increases in soil organic carbon between newly restored
and long-term restored wetlands supports the conclusion that restored wetlands sequester organic carbon. Assuming a sequestration
duration of 33 years and a return to historical SOC densities we estimate a mean annual sequestration rate for restored wetlands
of 2.7 Mg C ha−1year−1 or 9.9 Mg CO2 eq. ha−1 year−1. Even after accounting for increased CH4 emissions associated with restoration our research indicates that wetland restoration would sequester approximately 3.25 Mg
CO2 eq. ha−1year−1. This research indicates that widescale restoration of seasonal, semi-permanent, and permanent wetlands in the Canadian prairies
could help mitigate GHG emissions in the near term until a more viable long-term solution to increasing atmospheric concentrations
of GHGs can be found. 相似文献
70.