Ultrastructural Changes Caused by Snf7 RNAi in Larval Enterocytes of Western Corn Rootworm (Diabrotica virgifera virgifera Le Conte)

The high sensitivity to oral RNA interference (RNAi) of western corn rootworm (WCR, Diabrotica virgifera virgifera Le Conte) provides a novel tool for pest control. Previous studies have shown that RNAi of DvSnf7, an essential cellular component of endosomal sorting complex required for transport (ESCRT), caused deficiencies in protein de-ubiquitination and autophagy, leading to WCR death. Here we investigated the detailed mechanism leading to larval death by analyzing the ultrastructural changes in midgut enterocytes of WCR treated with double-stranded RNA (ds-DvSnf7). The progressive phases of pathological symptoms caused by DvSnf7-RNAi in enterocytes include: 1) the appearance of irregularly shaped macroautophagic complexes consisting of relatively large lysosomes and multi-lamellar bodies, indicative of failure in autolysosome formation; 2) cell sloughing and loss of apical microvilli, and eventually, 3) massive loss of cellular contents indicating loss of membrane integrity. These data suggest that the critical functions of Snf7 in insect midgut cells demonstrated by the ultrastructural changes in DvSnf7 larval enterocytes underlies the conserved essential function of the ESCRT pathway in autophagy and membrane stability in other organisms.     

Study of Creatinine and its 5-Alkoxy Analogs: Structure and Conformational Studies in the Solid and Solution States by X-Ray Crystallography,NMR, UV and Mass Spectrometry

Abstract

Creatinine (2-amino-1,5- dihydro-1-methyl-4-imidazolone) is a natural by-product of cellular metabolism related to muscular mass. It is excreted in human urine and is necessary for normal kidney function. Urinary secretion of creatinine serves as a bench mark for several clinical measurements. Recently, in our laboratories, during the course of an investigation of the urine of cancer patients for tumor markers, we found some new metabolites of creatinine. These were identified as 5-methoxy and 5-ethoxy creatinine by UV, NMR and Mass spectrometry and their tautomeric structures confirmed by crystal structural investigations of the metabolites. The x-ray crystallographic analysis confirmed the structures of the compound and showed that it exists in the 2-amino form. The spectral characteristics of these new compounds and the generality of the reaction are discussed in this paper. Creatinine, when allowed to react with methanol, ethanol and propanol respectively, in the presence of charcoal and air gave the 5-methoxy, 5-ethoxy and 5-propoxy creatinine derivatives respectively, suggesting a generality of a reaction. The reaction of creatinine with alcohols in the presence of charcoal and air takes place through a free radical reaction mechanism.

     

Sequence and structural relationships in the cytokine family

The sequences of nine different cytokines, growth hormone, and prolactin have been aligned and their secondary structure predicted. The alignment reveals that each exon has a characteristic sequence pattern shared by all cytokines. The most striking sequence similarity is observed in exon 4, where the residue pair Phe-Leu is conserved in many cytokines. In addition, there are discreet homologous regions between two specific growth factors, including a high degree of homology between granulocyte-macrophage colony-stimulating factor (GM-CSF) and interleukin 3 (IL-3). The secondary structure analysis predicts that exon 3 of all cytokines has an antiparallel helix-turn-helix motif, which is likely to form the central helical segments of a four -helical bundle-type structure. Based on the secondary structure and the disulfidebonding pattern, the topological connectivity for a number of cytokines has been predicted.     

A novel gene mutation that confers abnormal patterns of beta-carotene accumulation in cauliflower (Brassica oleracea var. botrytis)

The Or gene of cauliflower (Brassica oleracea var. botrytis) causes many tissues of the plant to accumulate carotenoids and turn orange, which is suggestive of a perturbation of the normal regulation of carotenogenesis. A series of experiments to explore the cellular basis of the carotenoid accumulation induced by the Or gene was completed. The Or gene causes obvious carotenoid accumulation in weakly or unpigmented tissues such as the curd, pith, leaf bases and shoot meristems, and cryptically in some cells of other organs, including the roots and developing fruits. The dominant carotenoid accumulated is beta-carotene, which can reach levels that are several hundred-fold higher than those in comparable wild-type tissues. The beta-carotene accumulates in plastids mainly as a component of massive, highly ordered sheets. The Or gene does not affect carotenoid composition of leaves, nor does it alter color and chromoplast appearance in flower petals. Interestingly, mRNA from carotenogenic and other isoprenoid biosynthetic genes upstream of the carotenoid pathway was detected both in orange tissues of the mutant, and in comparable unpigmented wild-type tissues. Thus the unpigmented wild-type tissues are likely to be competent to synthesize carotenoids, but this process is suppressed by an unidentified mechanism. Our results suggest that the Or gene may induce carotenoid accumulation by initiating the synthesis of a carotenoid deposition sink in the form of the large carotenoid-sequestering sheets.     

Structure of the Mycobacterium tuberculosis flavin dependent thymidylate synthase (MtbThyX) at 2.0A resolution

A novel flavin-dependent thymidylate synthase was identified recently as an essential gene in many archaebacteria and some pathogenic eubacteria. This enzyme, ThyX, is a potential antibacterial drug target, since humans and most eukaryotes lack the thyX gene and depend upon the conventional thymidylate synthase (TS) for their dTMP requirements. We have cloned and overexpressed the thyX gene (Rv2754c) from Mycobacterium tuberculosis in Escherichia coli. The M.tuberculosis ThyX (MtbThyX) enzyme complements the E.coli chi2913 strain that lacks its conventional TS activity. The crystal structure of the homotetrameric MtbThyX was determined in the presence of the cofactor FAD and the substrate analog, 5-bromo-2'-deoxyuridine-5'-monophosphate (BrdUMP). In the active site, which is formed by three monomers, FAD is bound in an extended conformation with the adenosine ring in a deep pocket and BrdUMP in a closed conformation near the isoalloxazine ring. Structure-based mutational studies have revealed a critical role played by residues Lys165 and Arg168 in ThyX activity, possibly by governing access to the carbon atom to be methylated of a totally buried substrate dUMP.     

Substructure of freeze-substituted plasmodesmata

Summary The substructure of plasmodesmata in freeze-substituted tissues of developing leaves of the tobacco plant (Nicotiana tabacum L. var. Maryland Mammoth) was studied by high resolution electron microscopy and computer image enhancement techniques. Both the desmotubule wall and the inner leaflet of the plasmodesmatal plasma membrane are composed of regularly spaced electron-dense particles approximately 3 nm in diameter, presumably proteinaceous and embedded in lipid. The central rod of the desmotubule is also particulate. In plasmodesmata with central cavities, spoke-like extensions are present between the desmotubule and the plasma membrane in the central cavity region. The space between the desmotubule and the plasma membrane appears to be the major pathway for intercellular transport through plasmodesmata. This pathway may be tortuous and its dimensions could be regulated by interactions between desmotubule and plasma membrane particles.Abbreviations ER endoplasmic reticulum - PJF propane jet freezing - HPF high pressure freezing - CRT cathode ray tube - IP₃ inositoltrisphosphate     

Structure-activity relationship of cytokinins: crystal structure and conformation of 6-furfurylaminopurine (kinetin).

The crystal structure of 6-furfurylaminopurine (kinetin) was determined from three-dimensional x-ray diffraction data. The N⁶-substituent is distal to the imidazole ring. The molecules are linked across centers of inversion by pairs of N(6)-H···N(7) and N(9)-H···N(3) hydrogen bonds, utilizing the Hoogsteen sites for base pairing. From an analysis of the conformational preferences of cytokinins, an “active conformation” favourable for eliciting maximal cytokinin activity is proposed. The loss of cytokinin activity due to various chemical modifications such as the substitution at N¹, alteration of the methylene bridge, is correlated to the inability of cytokinins to achieve the active conformation.     

Diversity and ecology of lianas in tropical dry evergreen forests on the Coromandel Coast of India under various disturbance regimes

In this study we attempted to explore patterns of diversity, abundance, climbing and dispersal mode of lianas in relation to disturbance in 40 Indian subtropical dry forests. The sites were selected to represent four disturbance categories: relatively undisturbed, moderately disturbed, much disturbed and heavily disturbed. All lianas ≥1 cm dbh were counted, which resulted in a total amount of 5689 individuals of lianas, representing 77 species in 62 genera and 32 families. Liana species richness and abundance increased with forest disturbance, but the liana basal area values showed an opposite trend, with high scores in undisturbed sites. Twining was the main climbing mechanism (61.3%) and zoochory (59.6%) was the main dispersal mode in all the four forest categories. Application of Bray–Curtis cluster analysis produced three distinct clusters in which the much disturbed category was more distant from the others. High abundance of large lianas in undisturbed sites and that of the invasive Lantana camara in heavily disturbed site signals the conservation significance of the less disturbed study sites. The predominance of zoochorous dispersal indicates the faunal dependence of lianas, besides of host trees, thus underlining the need for a holistic approach in biodiversity conservation of this and similar tropical forests.     

N‐acetylcysteine prevents oxidized low‐density lipoprotein‐induced reduction of MG53 and enhances MG53 protective effect on bone marrow stem cells

MG53 is an important membrane repair protein and partially protects bone marrow multipotent adult progenitor cells (MAPCs) against oxidized low‐density lipoprotein (ox‐LDL). The present study was to test the hypothesis that the limited protective effect of MG53 on MAPCs was due to ox‐LDL‐induced reduction of MG53. MAPCs were cultured with and without ox‐LDL (0‐20 μg/mL) for up to 48 hours with or without MG53 and antioxidant N‐acetylcysteine (NAC). Serum MG53 level was measured in ox‐LDL‐treated mice with or without NAC treatment. Ox‐LDL induced significant membrane damage and substantially impaired MAPC survival with selective inhibition of Akt phosphorylation. NAC treatment effectively prevented ox‐LDL‐induced reduction of Akt phosphorylation without protecting MAPCs against ox‐LDL. While having no effect on Akt phosphorylation, MG53 significantly decreased ox‐LDL‐induced membrane damage and partially improved the survival, proliferation and apoptosis of MAPCs in vitro. Ox‐LDL significantly decreased MG53 level in vitro and serum MG53 level in vivo without changing MG53 clearance. NAC treatment prevented ox‐LDL‐induced MG53 reduction both in vitro and in vivo. Combined NAC and MG53 treatment significantly improved MAPC survival against ox‐LDL. These data suggested that NAC enhanced the protective effect of MG53 on MAPCs against ox‐LDL through preventing ox‐LDL‐induced reduction of MG53.