Mononuclear and dinuclear peroxotungsten complexes with co-ordinated dipeptides as potent inhibitors of alkaline phosphatase activity

New molecular peroxotungstate(VI) complexes with dipeptides as ancillary ligands of the type, [WO(O₂)₂(dipeptide)(H₂O)].3H₂O, dipeptide = glycyl-glycine or glycyl-leucine, have been synthesized and characterized by elemental analysis, spectral and physico-chemical methods including thermal analysis. The complexes contain side-on bound peroxo groups and a peptide zwitterion bonded to the metal centre unidentately through an O(carboxylate) atom. Investigations on certain biologically important key properties of these compounds and a set of dimeric compounds in analogous co-ligand environment, Na₂[W₂O₃(O₂)₄(dipeptide)₂].3H₂O, dipeptide = glycyl-glycine and glycyl-leucine, reported previously by us revealed interesting features of the compounds. Each of the compounds despite having a 7 co-ordinated metal centre exerts a strong inhibitory effect on alkaline phosphatase activity with a potency higher than that of the free dipeptide, tungstate or peroxotungstate. The compounds exhibit remarkable stability in solutions of acidic as well as physiological pH and are weaker as substrate to the enzyme catalase, compared to H₂O₂. The mononuclear and dinuclear peroxotungsten compounds are efficient oxidants of reduced glutathione (GSH), a reaction in which only one of the peroxo groups of a diperoxotungsten moiety of the complexes was found to be active.     

Surface Plasmon Tunability and Emission Sensitivity of Ultrasmall Fluorescent Copper Nanoclusters

Ultrasmall copper nanoparticles have been synthesized using copper(II) salt as precursor by hydrazine reduction in the presence of citric acid and cetyltrimethylammonium bromide facilitating the growth of stable copper nanoparticles with an average diameter of <2 nm. The corresponding surface plasmon resonances were monitored under variable microenvironments, and it is seen that these tiny copper nanoparticles form aggregates under stipulated reaction conditions. It is noted that ultrasmall copper nanoparticles do not exhibit any characteristic surface plasmon band in the visible region; rather, a continuous absorption is seen over the entire UV–vis region. However, a well-defined plasmon absorption band makes its appearance while the particles are aggregated in close-packed assembly. These results demonstrate that the maximum of surface plasmon resonance is red-shifted from that of isolated particles because of electromagnetic interaction between the particles. The aggregation process is manifested upon changes of pH, anionic surfactant, etc. and is not reversible, i.e., the aggregates could not be re-dispersed into ultrasmall particles. The effect of addition of electrolyte has been monitored to study the surface plasmon damping of the copper nanoparticles. The plasmonic sensitivity of the copper nanoparticle aggregates has been elicited by the determination of amino acid chain length with exquisite sensitivity because of enormous electromagnetic field at the junction of the particles in the aggregates. Interestingly, the as-synthesized ultrasmall copper nanoclusters exhibit excellent fluorescence properties with a narrow emission profile. The emission properties of these copper nanoclusters have been utilized as an indicator for selective and ultrasensitive detection of highly toxic Hg^II ions in water in the nanomolar detection limit.     

Molecular phylogeny of Bradyrhizobium bacteria isolated from root nodules of tribe Genisteae plants growing in southeast Poland

The phylogeny of 16 isolates from root nodules of Genista germanica, Genista tinctoria, Cytisus ratisbonensis, and Cytisus scoparius growing in southeast Poland was estimated by comparative sequence analysis of core (16S rDNA, atpD, glnII, recA) and symbiosis-related (nodC, nodZ, nifH) genes. All the sequences analyzed placed the studied rhizobia in the genus Bradyrhizobium. Phylogenetic analysis of individual and concatenated housekeeping genes showed that the Genisteae microsymbionts form a homogeneous group with Bradyrhizobium japonicum strains. The phylogeny of nodulation and nitrogen fixation genes indicated a close relationship of the examined rhizobia with B. japonicum, Bradyrhizobium canariense, Bradyrhizobium cytisi, Bradyrhizobium rifense and Bradyrhizobium lupini strains infecting other plants of the tribe Genisteae. For the first time, the taxonomic position of G. germanica and C. ratisbonensis rhizobia, inferred from multigenic analysis, is described. The results of the phylogenetic analysis based on the protein-coding gene sequences presented in this study also indicate potential pitfalls concerning the choice of marker and reference strains, which may lead to conflicting conclusions in species delineation.     

Protein complex finding and ranking: An application to Alzheimer’s disease

Protein complexes are known to play a major role in controlling cellular activity in a living being. Identifying complexes from raw protein–protein interactions (PPIs) is an important area of research. Earlier work has been limited mostly to yeast and a few other model organisms. Such protein complex identification methods, when applied to large human PPIs often give poor performance. We introduce a novel method called ComFiR to detect such protein complexes and further rank diseased complexes based on a query disease. We have shown that it has better performance in identifying protein complexes from human PPI data. This method is evaluated in terms of positive predictive value, sensitivity and accuracy. We have introduced a ranking approach and showed its application on Alzheimer’s disease.     

A novel ternary NiFe2O4/CuO/FeO-chitosan nanocomposite as a cholesterol biosensor

We report the results of studies relating to the in situ synthesis of a novel ternary NiFe₂O₄/CuO/FeO-chitosan nanocomposite, which could be utilized as a cholesterol biosensor. The phase identification, morphology and particle size of the NiFe₂O₄/CuO/FeO nanocomposite have been investigated via X-ray diffraction pattern (XRD), scanning electron microscopy (SEM), high resolution transmission electron microscope (HR-TEM) and Fourier transform infrared (FTIR) spectroscopy. The quantification of cholesterol was accomplished by immobilizing cholesterol oxidase (ChOx) onto a chitosan-NiFe₂O₄/CuO/FeO nanocomposite (NiFe₂O₄/CuO/FeO-CH NC) deposited onto an indium-tin-oxide (ITO) glass substrate via the sol–gel technique. The electrochemical study results of the biocompatible ChOx/NiFe₂O₄/CuO/FeO-CH/ITO electrode reveal good linearity (50–5000 mg/L), a low detection limit (313 mg/L), high sensitivity (0.043 μA/(mg/L cm^?2)), a fast response time (10 s) and a shelf-life of 3 months. The low Michaelis–Menten constant (K_m) of 80 mg/L (0.21 mM) indicates the high affinity of ChOx for the analytes. Further, this bioelectrode has been used in clinical applications to estimate cholesterol levels with negligible interference (2%) from analytes present in human serum samples.     

Estrogen receptor beta. Potential functional significance of a variety of mRNA isoforms

A putative 2-methyl-6-phytylbenzoquinone (MPBQ) methyltransferase gene, SLL0418, was identified from the Synechocystis PCC6803 genome based on its homology to previously characterized gamma-tocopherol methyltransferases. Genetic and biochemical evidence confirmed open reading frame (ORF) SLL0418 encodes a MPBQ methyltransferase. An SLL0418 partial knockout mutant accumulated beta-tocopherol with no effect in the overall tocopherol content of the cell. In vitro assays of the SLL0418 gene expressed in Escherichia coli showed the enzyme efficiently catalyzes methylation of ring carbon 3 of MPBQ. In addition, the enzyme also catalyzes the methylation of ring carbon 3 of 2-methyl-6-solanylbenzoquinol in the terminal step of plastoquinone biosynthesis.     

Bioprospecting of Plant Growth Promoting Bacilli and Related Genera Prevalent in Soils of Pristine Sacred Groves: Biochemical and Molecular Approach

Bacillus spp. and related genera native to soils of the pristine sacred groves from Meghalaya, India were characterized using biochemical and 16S rRNA gene analysis which revealed dominance of Bacillus, Paenibacillus, Lysinibacillus and Viridibacillus in the groves. Biochemical estimation was carried out for in vitro testing of plant growth promoting traits present in these isolates. PCR screening were performed for plant growth-promoting related genes involved in the biosynthesis of acid phosphatase (AcPho), indolepyruvate decarboxylase (ipdC), 1-aminocyclopropane-1-carboxylate deaminase (accd) and siderophore biosynthesis protein (asbA). 76% of the sacred grove isolates gave an amplified fragment for AcPho. Three of the isolates gave an amplified fragment for IpdC gene. Apart from 2 isolates, all the other isolates including the reference strains were positive for the amplification of the accd gene indicating their potential to produce ACC deaminase enzyme. 42% of the isolates gave an amplified fragment for asbA gene indicating the potential ability of these isolates to produce the catechol type siderophore, petrobactin. Overall findings indicated multiple PGP genetic traits present in these isolates which suggested that these isolates are capable of expressing multiple PGP traits. Phylogenetic and sequence analysis of accd and asbA genes from the isolates revealed that asbA genes from Paenibacillus taichungiensis SG3 and Paenibacillus tylopili SG24 indicated the occurrence of intergeneric horizontal transfer between Paenibacillus and Bacillus.