Role of His505 in the soluble fumarate reductase from Shewanella frigidimarina

The X-ray structure of the soluble fumarate reductase from Shewanella frigidimarina [Taylor, P., Pealing, S. L., Reid, G. A., Chapman, S. K., and Walkinshaw, M. D. (1999) Nat. Struct. Biol. 6, 1108-1112] clearly shows the presence of an internally bound sodium ion. This sodium ion is coordinated by one solvent water molecule (Wat912) and five backbone carbonyl oxygens from Thr506, Met507, Gly508, Glu534, and Thr536 in what is best described as octahedral geometry (despite the rather long distance from the sodium ion to the backbone oxygen of Met507 (3.1 A)). The water ligand (Wat912) is, in turn, hydrogen bonded to the imidazole ring of His505. This histidine residue is adjacent to His504, a key active-site residue thought to be responsible for the observed pK(a) of the enzyme. Thus, it is possible that His505 may be important in both maintaining the sodium site and in influencing the active site. Here we describe the crystallographic and kinetic characterization of the H505A and H505Y mutant forms of the Shewanella fumarate reductase. The crystal structures of both mutant forms of the enzyme have been solved to 1.8 and 2.0 A resolution, respectively. Both show the presence of the sodium ion in the equivalent position to that found in the wild-type enzyme. The structure of the H505A mutant shows the presence of two water molecules in place of the His505 side-chain which form part of a hydrogen-bonding network with Wat48, a ligand to the sodium ion. The structure of the H505Y mutant shows the hydroxyl group of the tyrosine side-chain hydrogen-bonding to a water molecule which is also a ligand to the sodium ion. Apart from these features, there are no significant structural alterations as a result of either substitution. Both the mutant enzymes are catalytically active but show markedly different pH profiles compared to the wild-type enzyme. At high pH (above 8.5), the wild type and mutant enzymes have very similar activities. However, at low pH (6.0), the H505A mutant enzyme is some 20-fold less active than wild-type. The combined crystallographic and kinetic results suggest that His505 is not essential for sodium binding but does affect catalytic activity perhaps by influencing the pK(a) of the adjacent His504.     

Recombinant CLIC1 (NCC27) assembles in lipid bilayers via a pH-dependent two-state process to form chloride ion channels with identical characteristics to those observed in Chinese hamster ovary cells expressing CLIC1

CLIC1 (NCC27) is an unusual, largely intracellular, ion channel that exists in both soluble and membrane-associated forms. The soluble recombinant protein can be expressed in Escherichia coli, a property that has made possible both detailed electrophysiological studies in lipid bilayers and an examination of the mechanism of membrane integration. Soluble E. coli-derived CLIC1 moves from solution into artificial bilayers and forms chloride-selective ion channels with essentially identical conductance, pharmacology, and opening and closing kinetics to those observed in CLIC1-transfected Chinese hamster ovary cells. The process of membrane integration of CLIC1 is pH-dependent. Following addition of protein to the trans solution, small conductance channels with slow kinetics (SCSK) appear in the bilayer. These SCSK modules then appear to undergo a transition to form a high conductance channel with fast kinetics. This has four times the conductance of the SCSK and fast kinetics that characterize the native channel. This suggests that the CLIC1 ion channel is likely to consist of a tetrameric assembly of subunits and indicates that despite its size and unusual properties, it is able to form a completely functional ion channel in the absence of any other ancillary proteins.     

pH-dependent changes in the in vitro ligand-binding properties and structure of human clusterin

Clusterin is a glycoprotein which is locally overexpressed at sites of tissue damage or stress, leading to the proposal that it may be a cytoprotective protein. It has been shown that clusterin has chaperone-like activity, being able to protect proteins against precipitation under stress conditions. It has also been shown that local acidosis is common at sites of tissue damage or stress. We asked whether acidic pH induces structural changes in clusterin and enhances its ability to bind to other proteins. We found by affinity chromatography and ELISA that the binding of clusterin to glutathione-S-transferase, IgG, apolipoprotein A-I, and complement protein C9 was enhanced at mildly acidic compared to physiological pH. Analytical ultracentrifugation and gel filtration studies revealed that clusterin exists in different polymerization states with monomer occurring preferentially at pH 5.5 and multimeric species at pH 7.5. Although circular dichroism showed little difference in the alpha-helical and beta-sheet contents of clusterin at pH 5 compared to pH 7.5, evidence for pH-dependent structural changes in clusterin was obtained from fluorescence experiments. pH titrations showed reversible changes in the fluorescence of tryptophan residues in clusterin. There was a reversible 2-fold increase in the fluorescence of the extrinsic probe 4, 4'-bis(1-anilinonaphthalene-8-sulfonate) bound to clusterin at pH 5. 5 compared to pH 7.5. There was also a 3.5-fold increase in fluorescence resonance energy transfer from tryptophan residues in clusterin to 4,4'-bis(1-anilinonaphthalene-8-sulfonate) at pH 5.5 compared to pH 7.5. These data suggest that pH-induced changes in the structure of clusterin are responsible for its enhanced ability to bind protein ligands at mildly acidic pH.     

Preliminary observation of elevated levels of nanocrystalline iron oxide in the basal ganglia of neuroferritinopathy patients

Magnetometry analysis of brain tissue sub-samples from two neuroferritinopathy patients provides a preliminary indication that the amount of magnetic iron compounds associated with this rare disease is significantly larger than in age/sex-matched controls. The primary iron compounds contributing to the remnant magnetization of the tissue above 50 K and at body temperature are both blocked and superparamagnetic (SPM) biogenic magnetite (Fe3O4) and/or maghemite (gamma-Fe2O3). The concentration of SPM magnetite is significant and appears to be proportional to the concentration of ferritin, which varies with progression of the disease. The mutated ferritin protein appears to be responsible for the presence of iron oxide nano-particules, which in turn could be responsible for extensive damage in the brain.     

Visual field of cultured striped trumpeter Latris lineata (Teleostei) larvae feeding on rotifer prey

The visual field of striped trumpeter Latris lineata larvae fed rotifer prey was determined from analysis of feeding behaviour in the horizontal plane. The visual field was forward and laterally directed, characterised by maximum reactive distances (distance at which the predator first detects and reacts to the prey) of 5.07 mm and 5.25 mm on days 13 and 17 post-hatching, respectively, 97% of mean larval length. This confirmed the predicted horizontal visual field, forward and laterally directed, derived from higher cone cell densities in the dorso-temporal and medial regions of the retina compared with ventral regions. The visual field of prey detection expanded laterally with ontogeny as a wider range of reactive angles was used by 17 day-old than 13 day-old larvae. Larvae displayed a saltatory searching pattern, periodically stopping to scan for prey throughout the visual field, and exhibited a side-to-side movement of the head as they approached and stopped, prior to striking at a detected prey item. Larvae on day 17 post-hatching terminated 35% of feeding sequences at the pre-strike position, at a mean distance from prey of 0.58 mm.     

Changes in the skin-scale complex with sexual maturation in the European eel, Anguilla anguilla (L.)

Structural features of the epidermis, dermis and scales were examined in adult female Anguilla anguilla of varying sexual maturity. Advanced sexual stages were obtained by hormone injection. The dermis increased in thickness with both size and sexual development. Epidermal thickness was unrelated to size or maturity but mucous cell densities decreased in more mature animals. Hormone treated eels showed a loss of mucous cells accompanied by degeneration of the epidermis. Scale areas increased from 50% in sexually immature adults to 145% in sexually maturing eels. Skin calcium values ranged from 0.27 to 0.83 mg cm⁻² and did not show any relation to either scale or sexual maturity. The possible relevance of structural changes to migration is discussed.     

Growth and reproduction of the Antarctic nototheniid fish Pagothenia borchgrevinki

Summary Growth and reproductive parameters were recorded from Pagothenia borchgrevinki captured from beneath the sea ice in McMurdo Sound during October and November 1987. Fish were aged on the basis of unvalidated check rings in otoliths. Fish were estimated to be 2–7 years old. There was good correlation of estimated ages with length-frequency modes for a number of year classes. Growth was linear, and did not approach an asymptote with increasing age. Most females were in the early stages of vitellogenesis, however, 2 fish showed evidence of imminent or recent spawning activity. Males were all in the early stages of spermatogenesis. Relative fecundity was low, and this was associated with large egg size. Ovarian development was group synchronous, and it appears that spawning mainly occurs during winter.