Purification, cloning, and DNA sequence analysis of a chitinase from an overproducing mutant of Streptomyces peucetius defective in daunorubicin biosynthesis

Extracellular chitinases of Streptomyces peucetius and a chitinase overproducing mutant, SPVI, were purified to homogeneity by ion exchange and gel filtration chromatography. The purified enzyme has a molecular mass of 42 kDa on SDS-PAGE, and the N-terminal amino acid sequence of the protein from the wild type showed homology to catalytic domains (Domain IV) of several other Streptomyces chitinases such as S. lividans 66, S. coelicolor A3(2), S. plicatus, and S. thermoviolaceus OPC-520. Purified SPVI chitinase cross-reacted to anti-chitinase antibodies of wild-type S. peucetius chitinase. A genomic library of SPVI constructed in E. coli using lambda DASH II was probed with chiC of S. lividans 66 to screen for the chitinase gene. A 2.7 kb fragment containing the chitinase gene was subcloned from a lambda DASH II clone, and sequenced. The deduced protein had a molecular mass of 68 kDa, and showed domain organization similar to that of S. lividans 66 chiC. The N-terminal amino acid sequence of the purified S. peucetius chitinase matched with the N-terminus of the catalytic domain, indicating the proteolytic processing of 68 kDa chitinase precursor protein to 42 kDa mature chitinase containing the catalytic domain only. A putative chiR sequence of a two-component regulatory system was found upstream of the chiC sequence.     

Targeting and sensing cancer cells with ZnO nanoprobes in vitro

A new class of zinc oxide quantum dots (ZnO QDs) was investigated as nanoprobes for targeting cancer cells in vitro. ZnO nanoparticles were synthesized using conventional sol–gel method and encapsulated using trimethoxy aminopropyl silane. Transferrin, the ligand targeting the cancer cells, was conjugated to the ZnO QDs. In vitro imaging studies using MDA-MB-231 showed the biocompatible ZnO nanoprobe selectively binding to the cell surface receptor and internalizing through receptor-mediated endocytosis. Time-lapsed photobleaching studies indicate the ZnO QDs to be resistant to photobleaching, making them suitable for long term imaging purpose. Investigation of the ZnO nanoprobe as a platform for sensitive bioassays indicates that it can be used as an alternative fluoroprobe for cancer cell targeting and sensing applications.     

Surfacing activity and food utilization in the air-breathing fish polyacanthus cupanus exposed to constant Po2

The influence of feeding on the surfacing frequency of the air-breathing fishPolyacanthus cupanus was investigated. Feeding increased the surfacing and swimming activities. Food conversion, maintenance requirements and energy spent in swimming and surfacing were measured under different feeding regimes.     

Transgenic indica rice cv. ADT 43 expressing a Δ<Superscript>1</Superscript>-pyrroline-5-carboxylate synthetase (<Emphasis Type="Italic">P5CS</Emphasis>) gene from <Emphasis Type="Italic">Vigna aconitifolia</Emphasis> demonstrates salt tolerance

To develop salt tolerant rice, the P5CS gene of Vigna aconitifolia, encoding for proline synthesis, was introduced into the popular indica rice cultivar ADT 43. Agrobacterium tumefaciens strain LBA 4404 harboring the binary vector pCAMBIA 1301/P5CS, carrying the proline synthesis encoding gene P5CS, was co-cultivated with embryogenic callus of rice. Adding 100 μM acetosyringone to the Linsmaier and Skoog (LS) liquid and solid co-culture medium, along with 30 mg/l hygromycin and 250 mg/l timentin, contributed to significantly higher efficiency of transformation. Southern blot analysis of T₁ independent transformants revealed that the copy number of transgene varied between one and three. When transgenic plants were subjected to salt stress, these plants grew well in the presence of up to 200 mM NaCl, while control plants died within 10 days under these treatment conditions. These transgenic plants grew under salt stress for a period of 4 weeks, and were capable of flowering and set seed. T₁ plants segregated into 3:1 ratio suggesting Mendelian segregation pattern of inheritance of the P5CS transgene.     

Multiple templates-based homology modeling enhances structure quality of AT1 receptor: validation by molecular dynamics and antagonist docking

We present a comparative account on 3D-structures of human type-1 receptor (AT1) for angiotensin II (AngII), modeled using three different methodologies. AngII activates a wide spectrum of signaling responses via the AT1 receptor that mediates physiological control of blood pressure and diverse pathological actions in cardiovascular, renal, and other cell types. Availability of 3D-model of AT1 receptor would significantly enhance the development of new drugs for cardiovascular diseases. However, templates of AT1 receptor with low sequence similarity increase the complexity in straightforward homology modeling, and hence there is a need to evaluate different modeling methodologies in order to use the models for sensitive applications such as rational drug design. Three models were generated for AT1 receptor by, (1) homology modeling with bovine rhodopsin as template, (2) homology modeling with multiple templates and (3) threading using I-TASSER web server. Molecular dynamics (MD) simulation (15 ns) of models in explicit membrane-water system, Ramachandran plot analysis and molecular docking with antagonists led to the conclusion that multiple template-based homology modeling outweighs other methodologies for AT1 modeling.     

Inhibition of Candida albicans virulence factors by novel levofloxacin derivatives

Candida albicans is an important opportunistic fungal pathogen, responsible for biofilm associated infections in immunocompromised patients. The aim of the present study was to investigate the antibiofilm properties of novel levofloxacin derivatives on C. albicans biofilms. The levofloxacin derivatives at their Biofilm Inhibitory Concentrations (BIC) were able to inhibit the biofilms of C. albicans, the yeast-to-hyphal transition and were also able to disrupt their mature biofilms. Furthermore, Real-time PCR analysis showed that the expression of ergosterol biosynthesis pathway gene (ERG11) and the efflux pump-encoding genes (CDR1 and MDR1) was decreased upon treatment with the levofloxacin derivatives. The total ergosterol content quantified using UV spectrophotomer showed decrease in ergosterol in the presence of levofloxacin derivatives. Overall, levofloxacin derivatives (6a, 6c and 7d) are capable of inhibiting C. albicans virulence factors. Therefore, these compounds with potential therapeutic implications can be used as new strategy to treat biofilm-related candidal infections.     

Prevention of quorum-sensing-mediated biofilm development and virulence factors production in Vibrio spp. by curcumin

The increasing occurrence of disease outbreaks caused by Vibrio spp. and the emergence of antibiotic resistance has led to a growing interest in finding alternative strategies to prevent vibriosis. Since the pathogenicity of vibrios is controlled in part by quorum-sensing (QS) system, interfering with this mechanism would prevent the pathogenicity of vibrios without developing resistance. Hence, a non-toxic phytochemical curcumin from Curcuma longa was assessed for its potential in reducing the production of QS-dependent virulence factors in Vibrio spp. The obtained results evidenced 88 % reduction in bioluminescence of Vibrio harveyi by curcumin. Further, curcumin exhibited a significant inhibition in alginate, exopolysaccharides, motility, biofilm development and other virulence factors production in Vibrio parahaemolyticus, Vibrio vulnificus and V. harveyi. In in vivo analysis, curcumin enhanced the survival rate of Artemia nauplii up to 67 % against V. harveyi infection by attenuating its QS-mediated virulence.     

Chemical composition and caloric content of egg and zoea of the hermit crabeupagurus bernhardus

Summary 1. Chemical composition and caloric content of egg and zoea of the hermit crabEupagurus bernhardus have been determined and the cumulative efficiencies of yolk utilization calculated.2. The cumulative efficiencies of yolk utilization for different constituents were 70.0%, 55.3%, 79.4% or 35.0% for dry weight, caloric content, protein or fat.3. Since the efficiencies with which the different constituents of yolk utilized vary, the chemical composition of the developing eggs undergoes considerable changes. While fat and caloric content showed remarkable decreases, water, ash and protein contents of the eggs increased.4. Of 0.0722 cal expended on metabolic processes of the embryo, only 28.4% was drawn from the oxidation of protein, while fat contributed as much as 66.6%.5. Considerable quantities of inorganic salts (0.77µg/egg) are absorbed from the sea-water by the developing egg.

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Chemische Zusammensetzung und Kaloriengehalt von Ei und Zoea des EinsiedlerkrebsesEupagurus bernhardus

Kurzfassung Im Laufe der vollständigen Eientwicklung findet eine Zunahme von Wasser um 31,5%, Asche um 5,7%, Eiweiß um 8,8% und Nicht-Eiweiß-Stickstoff um 0,2% statt. In der gleichen Zeit sinkt der Fettgehalt von 29,5% auf 14,8% und der Energiegehalt von 6292 auf 5282 cal/g organischer Substanz. Der Kumulativ-Nutzeffekt der Entwicklung von einem Ei zur Zoea-Larve beträgt 70,0%, 55,3%, 79,4% bzw. 35,0% bezogen auf Trockengewicht, Kaloriengehalt, Eiweiß bzw. Fett. Von den 0,0722 cal, die sich auf den Stoffwechsel der gesamten Entwicklung eines Eies beziehen, werden nur 28,4% aus Eiweiß gewonnen; 66,6% werden durch Oxydation von Fett beigetragen.