A trophic diversity index for presence-absence food data

Summary An index to assess trophic diversity from presence-absence food data is proposed. The index is computed according to the expression , where the 's are the frequencies of occurrence of the various prey categories. The upper and lower limits of D are derived. A test of the reliability of D was carried out by comparing D and H (Shannon's information function) values obtained from a set of twenty-three food analyses from vertebrate animals. Results show that, although a significant correlation exists between D and H, only a small fraction of H-variation is explained by D-variation. D contains two kinds of information, one referred to species richness and another relative to the degree of between-samples heterogeneity. The former is shared in common with H and this presumably explains the fairly weak correlation found between both measures.     

A bead and spring model for the stiffness of DNA.

The chain stiffness of linear native DNA is represented by a generalized bead and spring model recently proposed. It incorporates molecular rigidity by means of springs between beads, which are second neighbors along the contour of the chain. These springs are equivalent to elastic forces having longitudinal and transversal contributions. The model is compared with existing experimental data of sedimentation and low-angle light scattering to obtain the statistical parameters of DNA. The value of the statistical length obtained with this model is 1300 Å. The same value is obtained with the wormlike chain. Throughout this analysis, excluded volume is left out as a simplifying assumption.     

A theory for environmental systems

A theory for environmental systems is defined on the basis of two elements, termed ‘environmental unity’ and ‘behavior’. Environmental systems are regarded as non-living systems, each one related with only one biological system. We construct a material-energetic environmental diagram, which is introduced in terms of the theory of categories, thereby giving rise to a new categoryE. By means of two biological conditions, and the definition of static property of the biological system (related to its own environment), a set of theorems is obtained, exhibiting mathematical consequences for the represented theory.     

Melanoma RBPome identification reveals PDIA6 as an unconventional RNA-binding protein involved in metastasis

RNA-binding proteins (RBPs) have been relatively overlooked in cancer research despite their contribution to virtually every cancer hallmark. Here, we use RNA interactome capture (RIC) to characterize the melanoma RBPome and uncover novel RBPs involved in melanoma progression. Comparison of RIC profiles of a non-tumoral versus a metastatic cell line revealed prevalent changes in RNA-binding capacities that were not associated with changes in RBP levels. Extensive functional validation of a selected group of 24 RBPs using five different in vitro assays unveiled unanticipated roles of RBPs in melanoma malignancy. As proof-of-principle we focused on PDIA6, an ER-lumen chaperone that displayed a novel RNA-binding activity. We show that PDIA6 is involved in metastatic progression, map its RNA-binding domain, and find that RNA binding is required for PDIA6 tumorigenic properties. These results exemplify how RIC technologies can be harnessed to uncover novel vulnerabilities of cancer cells.