Motility Tracks: Technique for Quantitative Study of Bacterial Movement

A method for recording movements of bacteria in time and space on a single photograph is described. Quantitative information on the behavior of various motile organisms may easily be obtained for comparative studies. The method possesses certain advantages over cinematography, and illustrations of applications of the technique are presented.     

A common reference population from four European Holstein populations increases reliability of genomic predictions

Background

Size of the reference population and reliability of phenotypes are crucial factors influencing the reliability of genomic predictions. It is therefore useful to combine closely related populations. Increased accuracies of genomic predictions depend on the number of individuals added to the reference population, the reliability of their phenotypes, and the relatedness of the populations that are combined.

Methods

This paper assesses the increase in reliability achieved when combining four Holstein reference populations of 4000 bulls each, from European breeding organizations, i.e. UNCEIA (France), VikingGenetics (Denmark, Sweden, Finland), DHV-VIT (Germany) and CRV (The Netherlands, Flanders). Each partner validated its own bulls using their national reference data and the combined data, respectively.

Results

Combining the data significantly increased the reliability of genomic predictions for bulls in all four populations. Reliabilities increased by 10%, compared to reliabilities obtained with national reference populations alone, when they were averaged over countries and the traits evaluated. For different traits and countries, the increase in reliability ranged from 2% to 19%.

Conclusions

Genomic selection programs benefit greatly from combining data from several closely related populations into a single large reference population.     

Saccharomyces cerevisiae Apn1 mutation affecting stable protein expression mimics catalytic activity impairment: Implications for assessing DNA repair capacity in humans

Apurinic/apyrimidinic (AP) endonucleases play a major role in the repair of AP sites, oxidative damage and alkylation damage in DNA. We employed Saccharomyces cerevisiae in an unbiased forward genetic screen to identify amino acid substitutions in the major yeast AP endonuclease, Apn1, that impair cellular DNA repair capacity by conferring sensitivity to the DNA alkylating agent methyl methanesulfonate. We report here the identification and characterization of the Apn1 V156E amino acid substitution mutant through biochemical and functional analysis. We found that steady state levels of Apn1 V156E were substantially decreased compared to wild type protein, and that this decrease was due to more rapid degradation of mutant protein compared to wild type. Based on homology to E. coli endonuclease IV and computational modeling, we predicted that V156E impairs catalytic ability. However, overexpression of mutant protein restored DNA repair activity in vitro and in vivo. Thus, the V156E substitution decreases DNA repair capacity by an unanticipated mechanism via increased degradation of mutant protein, leading to substantially reduced cellular levels. Our study provides evidence that the V156 residue plays a critical role in Apn1 structural integrity, but is not involved in catalytic activity. These results have important implications for elucidating structure-function relationships for the endonuclease IV family of proteins, and for employing simple eukaryotic model systems to understand how structural defects in the major human AP endonuclease APE1 may contribute to disease etiology.     

Young and excitable: the function of new neurons in the adult mammalian brain

Adult neurogenesis occurs in most species and is regulated by a wide variety of environmental and pharmacological challenges. The functional integration of neurons generated in the adult was first demonstrated in songbirds more than two decades ago. In the adult mammalian brain, neurons are continuously generated in two structures, the olfactory bulb and the hippocampus. Current evidence suggests that adult-born immature neurons have distinct electrophysiological properties from old neurons, and proposed roles in a variety of functions including olfaction, learning and mood regulation.     

'Navius' kissing stents for coronary bifurcation stenosis,recreating a new metallic carina: an IVUS-assessed case report

We report a case of implantation of a new design of stent which allows creation of a double-hemispheric lumen for the treatment of a bifurcational stenosis. The unfavourable outcome following the implantation of this stent is described.     

Effect of Respiratory Inhibitors on the Motility of Pseudomonas fluorescens

The translational motility of Pseudomonas fluorescens was weakly inhibited by oligomycin, Dicumarol, 2,4-dinitrophenol, 2n-heptyl-4-hydroxyquinoline N-oxide, and potassium cyanide. Atabrine and antimycin A together with potassium cyanide immediately immobilized this bacterium, but antimycin A alone was without effect. Gramicidin D also immobilized P. fluorescens, but its action was inhibited by K(+) and NH(4) (+) ions. In like manner, the effect of p-chloromercuribenzoate could be counteracted with cysteine, thereby suggesting the involvement of -SH groups in flagellar motility processes. It appears that the energy required for motility of P. fluorescens is generated by oxidative phosphorylation mediated by the cytochrome system.     

Effect of Viscosity on Bacterial Motility

The behavior of a number of motile flagellated bacteria toward viscosity characteristics of their fluid environments was observed. All showed an increase in velocity (micrometers per second) in more viscous solutions. Velocity reached a maximum at a characteristic value, however, and thereafter decreased with higher viscosities. Peritrichously flagellated bacteria had maximum velocities at higher viscosities than polarly flagellated bacteria. Effects of temperature, and possible utilization of chemical constituents in the viscous solutions, were studied and found to be negligible factors under the experimental conditions used. Different agents produced the same phenomenon, thus indicating that there probably were no chemically induced metabolic effects. Loss of available water and the possibility of a variable energy supply to the flagellar propulsive system were considered but are believed minimal. Theoretically derived thermodynamic equations were utilized and suggest that the conformation of the flagellar helix affects efficiency of propulsion. Such a relationship between helix waveform and velocity was experimentally observed with Thiospirillum jenese.     

Effects of deuterium oxide on bacterial flagellar motility

Summary Low concentrations of ²H₂O had either no observable influence, or a slightly stimulatory effect, on the translational movement of flagellated bacteria. High ²H₂O levels had marked, but transient, effects, expressed as a retardation of movement, especially on peritrichous forms. Polarly flagellated bacteria rapidly recovered from ²H₂O effects, whereas peritrichous organisms possessed only a limited recovery capacity.Flagellar regeneration and resumption of normal motion were retarded in a 1.5% (w/v) Trypticase Soy-²H₂O medium, and again this was more evident in peritrichous bacteria. The overall length of flagella regenerated in the presence of ²H₂O differed noticeably from those regenerated in its absence. There was no flagellar regeneration in 99.8% ²H₂O.The morphological appearance of ²H₂O-treated bacteria suggests that deuterium oxide acts as if it is a mild plasmolytic agent whose effects are readily reversible in most cases.