Climate impacts on Mediterranean blue tit survival: an investigation across seasons and spatial scales

In some hole nesting passerine species, long‐term monitoring data are available for several geographically independent populations. Climate forcing can then be documented and predictions made on the scale of distribution ranges. Several demographic studies of Paridae report dramatic impacts of wintertime climatic factors. However, these studies were undertaken in populations located in the northern parts of the species' ranges. Studies on the survival of Paridae in their southern ranges are necessary in order to assess potential latitudinal variation in climate forcing on survival. Based on monitoring of individual adult blue tits (Parus caeruleus), the effects of climatic factors on annual survival were assessed in three distinct Mediterranean populations. In these regions, climatic conditions in early summer might be expected to have a strong impact because they can be extremely hot and dry and because at this time of year Paridae are subjected to intrinsic constraints that stem from energetically costly postbreeding moult, recovery from reproductive costs, and from population densities inflated by the new cohort of fledglings. The impact of climatic conditions in early summer was, thus, addressed in addition to that prevailing in winter. In order to consider a large number of local climatic variables while limiting statistical power loss, integrative indices of local climate were built using multivariate techniques. In addition, the NAO and three large‐scale factors that are closely linked with atmospheric and oceanic circulation in the intertropical zone were considered as potentially influential factors in winter and early summer. Relationships between blue tit survival and indices of local temperature and precipitation in winter and in early summer were detected. Adult survival also correlated with a large‐scale tropical index in early summer: rainfall in the Sahel. This is one of the first quantitative indications that fluctuations in summer climatic conditions explain a significant part of the temporal variation in adult survival in unconnected populations of a sedentary European vertebrate. Furthermore, the results support the hypothesis that summertime local climates in Western Europe are closely linked with atmospheric and oceanic circulation in the intertropical zone.     

Isolation and characterization of microsatellite markers in pangolins (Mammalia,Pholidota, Manis spp.)

Thirty‐four polymorphic dinucleotide microsatellite loci were developed in the Malayan pangolin Manis javanica. Of the 34 markers, 32 and 18 were also amplified, respectively, in the Chinese pangolin (Manis pentadactyla) and the African tree pangolin (Manis tricuspis). Analysis of 24 Malayan, 12 Chinese and 2 African tree pangolins showed high levels of variability (heterozygosity ranging from 0.321 to 0.708). These are the first available microsatellite markers in Pholidota and will be an invaluable tool for evolutionary and conservation genetic studies in pangolins.     

Nine polymorphic microsatellite markers in Crepis sancta (Asteraceae)

We describe nine new variable di‐ and trinucleotide microsatellites in the plant Crepis sancta, as well as conditions for multiplexing and simultaneous genotyping sets of loci. Their variability was assessed in four populations. Four to 33 alleles were detected per locus; two to 23 alleles per population. Significant deviations from Hardy–Weinberg equilibrium could be attributed either to a mating system involving partial selfing or to null alleles. Genetic differentiation over all loci was significant among the four populations studied. These markers will constitute an efficient tool for investigating dispersal patterns in fragmented landscapes. Cross‐species amplification provided few loci variability in three other Crepis species (C. pulcra, C. foetida and C. rubra).     

Genetic variation and heavy metal tolerance in the ectomycorrhizal basidiomycete Suillus luteus

Twenty-one isolates of the ectomycorrhizal fungus Suillus luteus were screened for their tolerance to the heavy metals Zn, Cd, Cu and Ni, measured as inhibition of radial growth and biomass production. Two populations from even-aged pine stands were investigated: 10 isolates were obtained from an area polluted with high levels of Zn, Cd and Cu, and 11 isolates were obtained from a control population located in a nearby unpolluted area. RFLP patterns of the internal transcribed spacer region of the isolates confirmed the morphological identification of the carpophores. All isolates were maintained on basic medium without elevated metals to avoid phenotypically acquired metal tolerance. The in vitro Zn and Cd tolerance of the S. luteus isolates from the polluted habitat were significantly higher than the tolerances measured in the isolates from the nonpolluted site. This observation suggests that the elevated soil metal concentrations might be responsible for the evolution of adaptive Zn and Cd tolerance. Tolerance was maintained in an isolate not exposed to elevated metals for 3 yr. The two S. luteus populations did not differ in tolerance to Cu and Ni. The mechanisms for the adaptive Zn and Cd tolerance are not identical as there was no correlation between response to the two metals; the most Zn-tolerant isolate was the most sensitive for Cd in the metal-tolerant population. Zinc did not accumulate in basidiocarp tissue, whereas Cd levels in basidiocarps were significantly higher in the population on the polluted site. Inter-simple sequence-repeat fingerprints showed that 90% of the isolates were from different individuals. The genetic variation in the population from the unpolluted site was considerably larger than that observed at the polluted site.     

Contrasting responses of migration strategies in two European thrushes to climate change

Migration is a widespread strategy that enables animals to escape harsh winter conditions. It has been well documented that migration phenology in birds is changing in response to recent climate warming in the northern hemisphere. Despite the existence of large temporal and geographical scale ringing data on birds in Europe, changes in migration strategies in relation to climate warming have not been well studied, mainly because of a lack of appropriate statistical methods. In this paper, we develop a method that enables us to investigate temporal changes in migration strategies from recoveries of dead ringed birds. We estimated migration probability as the ratio between recovery probabilities of conspecific birds originating from different countries but potentially wintering in the same country. We applied this method to two European thrushes: the entirely migrant redwing Turdus iliacus , and the partially migrant blackbird T. merula . We tested for an immediate and a 1-year lagged relationship between our migration probability and climatic covariates (i.e. mean winter temperature in France and the North Atlantic Oscillation). Using ringing-recovery data collected in Finland, Germany, Switzerland and France from 1970 to 1999, we detected contrasting responses in these two species, likely related to their different migratory behaviours. Both species showed a decline in the probability for northern and eastern birds to winter in France. The entirely migratory redwing exhibited a year-to-year plastic response to climate, whereas the decline in the partially migrant blackbird was smooth, suggesting underlying genetic processes. The proposed method, thus, allows us to identify useful indicators of climatic impacts on migration strategies, as well as highlighting differences between closely related species.     

Threatened plants of New Caledonia: Is the system of protected areas adequate?

With 76% of its 3063 native species of flora endemic, the New Caledonia biodiversity hotspot has long been recognized as having a high potential for conservation. Under the new IUCN Red List categories, 25% of the endemic plants are at risk (Conservation Dependent, Vulnerable, Endangered, Critically Endangered), and five species are already extinct. A review of their distribution demonstrates that 83% of the threatened species do not occur at all in a conservation area, and only 11% have their conservation status improved by a protected area. The protected area network is geographically and floristically very unbalanced, with the rainforest and high altitude maquis in the south concentrating most of the conservation effort. Conversely, the middle and northern segments of the island, as well as all of the dry west coast, are left without adequate conservation area. Two vegetation types, the sclerophyll forest and the unique low/middle altitude maquis, are virtually totally unprotected. We conclude that the current network of protected areas needs to be considerably expanded, in terms of both geographical/floristic subregions within New Caledonia and vegetation type covered. With only 54% of the conservation area covered by strict mining restrictions, existing reserves need to have their conservation efficiency improved by a more vigorous enforcement of their status, and by extending mining bans to all of them.     

A New Least Squares Based Calibration for an Ultrasound Tomography Scanner Using Radial Image Processing

In the context of the development of an ultrasound scanner where a probe turns around the part of the body to be studied, a new tomographic technique has been developed: the Ultrasound Reflection-mode Tomography Using Radial Image Processing (URTURIP Technique). This technique is used when a unique B-scan image is insufficient to correctly describe a cross-section. It utilises B-scan images obtained under different angles of view in the same plane to reconstruct a better cross-sectional image. Before using the URTURIP Technique, a calibration step is required to accurately determine the centre of rotation of the probe. To solve the calibration problem, a reference method has been developed, but it is very time-consuming. This paper presents a faster method based on a least squares fitting and is compared to the reference method in terms of accuracy and time-consuming.     

Genets (Carnivora, Viverridae) in Africa: an evolutionary synthesis based on cytochrome b sequences and morphological characters

The taxonomy of the genets (genus Genetta) has long been discussed, thus hampering endeavours towards evolutionary reconstruction. Sequence data from the complete cytochrome b gene (cyt b) were generated for 50 specimens representing 15 morphological species in order to allow the production of the first exhaustive molecular phylogeny of the genets. Second, a revised morphological matrix comprising 50 characters was combined with the cyt b data to estimate the level of morphological homoplasy. Phylogenetic analyses were conducted using parsimony, maximum likelihood and Bayesian procedures. Our results based on cyt b contradict a part of the traditional taxonomy of genus Genetta, the servaline and small‐spotted genets being paraphyletic, but confirmed the species status recently re‐investigated for three genets belonging to the large‐spotted complex, including the newly described G. bourloni. The combined analysis yielded similar results although morphological characters were clearly homoplasic. Partitioned Bremer supports indicated conflicting signals between the two data sets throughout the tree, and species‐diagnostic characters, useful for delimiting species boundaries, were significantly correlated to habitat. However, morphological data supported the monophyly of clades (G. victoriae, other genets) (G. servalina, G. cristata), large‐spotted genet complex and forest forms. Our results suggest a complex evolutionary history of the genets in Africa, with a Poiana‐like ancestor inhabiting rain forest, and then a diversification involving two independent invasions of open habitats and one reversion to rain forest. Divergence estimates based on cyt b revealed that splitting events within genets partly follow a climatic speciation model during the cyclical periods of the Quaternary, although ‘primitive’ rain forest lineages diverged earlier, during the Late Miocene and Early Pliocene. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 81 , 589–610.