Post-Pleistocene evolution of Bornean shrews Crocidura foetida (Mammalia, Soricidae)

Fossil mandibles of the Bornean shrew Crocidura foetida recovered from excavations at the west mouth of Niah cave, Sarawak, Malaysia, show that the late Pleistocene population at this lowland location was comparable in size with the large subspecies Crocidura foetida doriae , presently occurring at inland, upland locations. Two Holocene specimens fall in the size range of the smaller lowland subspecies C. f. foetida . Comparable post-Pleistocene size-reduction is known among other mammals of Borneo, but this is the first instance of dated examples. The evolutionary trend conforms with Bergmann's 'rule' but, other than climate change, no selective agent is apparent.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 413–419.     

Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities

Progranulin is a secreted protein with important functions in several physiological and pathological processes, such as embryonic development, host defense, and wound repair. Autosomal dominant mutations in the progranulin gene cause frontotemporal dementia, while overexpression of progranulin promotes the invasive progression of a range of tumors, including those of the breast and the brain. Structurally, progranulin consists of seven-and-a-half tandem repeats of the granulin/epithelin module (GEM), several of which have been isolated as discrete 6-kDa GEM peptides. We have expressed all seven human GEMs using recombinant DNA in Escherichia coli. High-resolution NMR showed that only the three GEMs, hGrnA, hGrnC, and hGrnF, contain relatively well-defined three-dimensional structures in solution, while others are mainly mixtures of poorly structured disulfide isomers. The three-dimensional structures of hGrnA, hGrnC, and hGrnF contain a stable stack of two beta-hairpins in their N-terminal subdomains, but showed a more flexible C-terminal subdomain. Interestingly, of the well-structured GEMs, hGrnA demonstrated potent growth inhibition of a breast cancer cell line, while hGrnF was stimulatory. Poorly folded peptides were either weakly inhibitory or without activity. The functionally active and structurally well-characterized human hGrnA offers a unique opportunity for detailed structure-function studies of these important GEM proteins as novel members of mammalian growth factors.     

Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights

Comprehensive taxonomic sampling can vastly improve the accuracy of phylogenetic reconstruction. Here, we present the most inclusive phylogenetic analysis of Arvicolinae (Mammalia, Rodentia) to date, combining all published cytochrome  b gene sequences of greater than 1097 bp and new sequences from two monotypic genera. Overall, the phylogenetic relationships between 69 species of voles and lemmings, representing 18 genera and 10 tribes, were studied. By applying powerful modern approaches to phylogenetic reconstruction, such as maximum likelihood and Bayesian analysis, we provide new information on the early pulse of evolution within the Arvicolinae. While the position of two highly divergent lineages, Phenacomys and Ondatra , could not be resolved, the tribe Lemmini, appeared as the most basal group of voles. The collared lemmings (Dicrostonychini) grouped together with all of the remaining tribes. The two previously unstudied monotypic genera Dinaromys and Prometheomys form a moderately well-supported monophyletic clade, possibly a sister group to Ellobius (Ellobiusini). Furthermore, with one exception, all tribes ( sensu Musser & Carleton, 2005) proved to be monophyletic and can thus be regarded as meaningful evolutionary entities. Only the tribe Arvicolini emerged as paraphyletic in both analyses because of the unresolved phylogenetic position of Arvicola terrestris . Steppe voles of the genus Lagurus were solidly supported as a sister group to the Microtus and allies clade.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 825–835.     

A sauropod rib with an embedded theropod tooth: direct evidence for feeding behaviour in the Jehol group,China

Xing, L, Bell, P.R., Currie, P.J., Shibata, M., Tseng, K. & Dong, Z. 2012: A sauropod rib with an embedded theropod tooth: direct evidence for feeding behaviour in the Jehol group, China. Lethaia, Vol. 45, pp. 500–506. A fragmentary rib from the Lower Cretaceous (Barremian) Yixian Formation in northeastern China preserves rare, direct evidence of feeding behaviour by an unidentified theropod. The rib, which comes from the holotype of Dongbetitan, preserves an embedded, broken theropod tooth. Comparison of the tooth with all known theropods from the Yixian Formation suggests that it belongs to a new taxon of medium‐sized theropod. Given the large size difference between the sauropod and the theropod and the absence of reactive bone growth around the tooth, the bite likely occurred post‐mortem during scavenging. Recognition of a new, medium‐sized theropod increases the known diversity of taxa from the Yixian Formation and helps fill a gap in the theropod palaeoecology of that formation, which previously consisted of only small (<2 m) forms. □China, Cretaceous, feeding behaviour, theropod, titanosauriformes, sauropod.     

Behavioral Thermoregulation and the "Final Preferendum" Paradigm

Wider attention to Fry's (1947) "final preferendum" paradigmwould facilitate comparative studies of temperature preference(behavioral thermoregulation) among different animal groups.According to Fry's bipartite definition, the final preferendumis that temperature at which preference and acclimation areequal, and to which an animal in a thermal gradient will finallygravitate regardless of its prior thermal experience (acclimation).This paradigm is helpful in distinguishing between acute thermalpreferenda (measured within 2 hr or less after placing an animalin a thermal gradient), which are influenced by acclimationtemperature, and the species-specific final preferendum (measured24–96 hr after placement in the gradient), which is essentiallyindependent of prior acclimation because reacclimation occursduring the gravitation process. The paradigm does not take intoaccount non-thermal acclimatization influences (e.g., season,photoperiod, age, light intensity, salinity, disease, nutrition,pollutants, biotic interactions) which can also affect temperaturepreference. However, a graph of acutely preferred temperaturesversus acclimation temperatures can be employed to determinean equivalent acclimation temperature for any given acclimatizationstate, as a simple means of quantifying acclimatization statesresulting from interactions of many influences. This paradigm,developed for use with fishes, can also be applied to otherectothermic taxa, although it is most easily employed with aquaticorganisms because of the simplicity of specifying aquatic thermalenvironments in terms of water temperature alone. Methodologiesused in studies of behavioral thermoregulation should take theparadigm into account (especially with respect to length oftests) to enhance the comparative value of data across taxa.     

Mammal use of riparian corridors in semi-arid Sonora,Mexico

Wildlife populations in semi-arid regions are increasingly challenged by human activities and dependent on the connectivity of riparian corridors for access to surface water. The Madrean Archipelago is a biodiversity hotspot along the arid United States–Mexico borderlands that support both Neotropical and Nearctic wildlife. Infrastructure development (e.g., the border wall and the expansion of Mexican Federal Highway 2) in this region inhibits wildlife movement along the transnational mountain archipelago by disconnecting habitat. To explore the relationship between habitat variables and mammal use of riparian corridors in northern Sonora, Mexico, we collected data from 19 motion-sensitive cameras between October 2018 and April 2019 and used single-season occupancy models and Royle-Nichols abundance estimation models to analyze our data. We recorded 21 species of mammals, including the first sighting of jaguar (Panthera onca) in this region in 25 years. River characteristics (distance from river, riparian corridor width, water availability), remoteness (distance from highway, productivity, elevation), and topographic variety (vertical elevation difference) influenced patterns of occupancy probability and estimated abundance of mammals >1 kg, but the strength and direction of these relationships varied by species. Additionally, intermittently wet desert washes were comparable in species richness to the perennial system. These results highlight the importance of examining physical and biological aspects of habitat. This is especially true when identifying corridors where mitigation structures should be placed to improve wildlife connectivity in biodiversity hotspots like the Madrean Archipelago and semi-arid ecosystems worldwide.     

Oviposition behaviour of Tamarixia radiata: effects of host density and exposure time

1. The number of hosts attacked as a function of host density is considered to be an important characteristic of parasitoid behaviour and is used to estimate key parameters such as handling time and ‘instantaneous rate of discovery’. However, little has been done to validate functional response models by direct observation of parasitoid oviposition behaviour. 2. Tamarixia radiata is the most promising parasitoid for biological control attacking Diaphorina citri. Mass rearing and augmentative release seen as a potential strategy for suppression of D. citri has been documented in abandoned citrus, residential areas, and organic groves. Nevertheless, parasitism rates in culture and in the field are only moderate, leading to questions about oviposition behaviour in response to host density. 3. Behaviours of gravid T. radiata females presented with susceptible host instars were categorised and documented by direct observation for 30 min and by camera recordings made over 12 h. Frequency of searching and antennating increased with host density during the 30 min. Probing rejection rates and search duration increased significantly with host density over 12 h. These factors resulted in significantly lower fecundity than expected, possibly due to host mark‐mediated deterrence within the small searching area. Females took approximately 3.6–4.2 min to probe and parasitise a host regardless of host density and exposure duration. These results were markedly different from the 52.2 min estimated from the functional response equation. 4. Further experiments are required to assess the range and persistence of the putative host‐marking pheromone, and to better understand the relationship between functional response parameters and actual behaviour.     

Seasonal and diel patterns in Pacific white-sided dolphin (Lagenorhynchus obliquidens) pulsed calls near Barkley Canyon

Evaluation of temporal patterns in offshore marine mammal activity through visual data collection can be impaired by light and weather conditions and the cost of ship time. The conditions-independence and cost-efficacy of acoustic data collection make it popular for researching the temporal patterns of wild dolphins. However, Pacific white-sided dolphins (PWSDs) north of Southern California remain under-researched. This study evaluates diel and seasonal patterns in PWSD communication signals detected in 480 days of near-continuous passive acoustic data collected over 20 months from the Barkley Canyon node of Ocean Networks Canada's NEPTUNE observatory, offshore Vancouver Island, British Columbia, Canada. In this study, a random forest classifier is used to identify PWSD pulsed calls and false positives are manually removed. The resulting acoustic presence-absence data set is evaluated for seasonal and diel patterns using generalized additive mixed models, considering masking effects from ambient noise. PWSDs are found to be vocally active during all diel periods year-round, with high summer and low spring activity. Seasonally dependent diel patterns are identified, with PWSD pulsed calls exhibiting no diel pattern in spring, a slight increase in vocal activity during dusk and night in fall and winter, and a notable increase during night and dawn in summer.