基于Rag1基因序列变异的鲤形目鱼类系统发育重建:采样策略对生命之树的影响

The phylogenetic relationships of species are fundamental to any biological investigation, including all evolutionary studies. Accurate inferences of sister group relationships provide the researcher with an historical framework within which the attributes or geographic origin of species (or supraspecific groups) evolved. Taken out of this phylogenetic context, interpretations of evolutionary processes or origins, geographic distributions, or speciation rates and mechanisms, are subject to nothing less than a biological experiment without controls. Cypriniformes is the most diverse clade of freshwater fishes with estimates of diversity of nearly 3,500 species. These fishes display an amazing array of morphological, ecological, behavioral, and geographic diversity and offer a tremendous opportunity to enhance our understanding of the biotic and abiotic factors associated with diversification and adaptation to environments. Given the nearly global distribution of these fishes, they serve as an important model group for a plethora of biological investigations, including indicator species for future climatic changes. The occurrence of the zebrafish, Danio rerio, in this order makes this clade a critical component in understanding and predicting the relationship between mutagenesis and phenotypic expressions in vertebrates, including humans. With the tremendous diversity in Cypriniformes, our understanding of their phylogenetic relationships has not proceeded at an acceptable rate, despite a plethora of morphological and more recent molecular studies. Most studies are pre-Hennigian in origin or include relatively small numbers of taxa. Given that analyses of small numbers of taxa for molecular characters can be compromised by peculiarities of long-branch attraction and nodal-density effect, it is critical that significant progress in our understanding of the relationships of these important fishes occurs with increasing sampling of species to mitigate these potential problems. The recent Cypriniformes Tree of Life initiative is an effort to achieve this goal with morphological and molecular (mitochondrial and nuclear) data. In this early synthesis of our understanding of the phylogenetic relationships of these fishes, all types of data have contributed historically to improving our understanding, but not all analyses are complementary in taxon sampling, thus precluding direct understanding of the impact of taxon sampling on achieving accurate phylogenetic inferences. However, recent molecular studies do provide some insight and in some instances taxon sampling can be implicated as a variable that can influence sister group relationships. Other instances may also exist but without inclusion of more taxa for both mitochondrial and nuclear genes, one cannot distinguish between inferences being dictated by taxon sampling or the origins of the molecular data.     

Expression of Polyoma-induced Transplantation Antigen in Hybrid Cell Lines

The polyoma-induced transplantation antigen is virus specific and its presence on polyoma transformed but not normal cells suggested that at least part of the polyoma genome is maintained in tumour cells. Studies reported here indicate that malignancy is not maintained solely by the presence of this transplantation antigen.     

A microhistological survey on the trees of a relict subtropical laurel forest from the Macaronesian Islands as a base for assessing vertebrate plant diet

A microhistological collection and its respective key on the leaves and fleshy fruits produced by the mostly endemic trees that integrate the relict laurel forest in the Macaronesian Islands are presented. Epidermal tissues from the adaxial and abaxial surfaces of leaves and fruits of 23 species were extracted by scraping and prepared on individual microscope slides. An optical microscope with a camera lucida fixed at magnifications of ×400 was used to analyse and to draw the morphological traits of epidermal tissues to the same scale. Furthermore, quantitative data for those congeneric species were also obtained by using an image analysis program system. The results indicate that this microhistological method permits the differentiation of practically all species of trees present in the Macaronesian laurel forest. Furthermore, most species belonging to the same taxa (genus or family) show a general common pattern in the morphology of the different epidermal traits. Lastly, despite the effort that constitutes the preparation of plant microhistological collections of a determined ecosystem, it is of basic importance because it makes possible the performance of feeding ecological studies of several herbivorous and frugivorous vertebrate species. These results provide crucial information that elucidates the functioning of the food web and energetic flux dynamics of the Macaronesian laurel forest ecosystem.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 409–426.     

Impacts of grazing and burning on spider assemblages in dry eucalypt forests of north‐eastern New South Wales,Australia

Abstract In the dry eucalypt forests of north‐eastern New South Wales, Australia, cattle grazing occurs at low intensities and is accompanied by frequent low‐intensity burning. This study investigated the combined effects of this management practice on the ground‐dwelling and arboreal (low vegetation) spider assemblages. Spiders were sampled at 49 sites representing a range of grazing intensities, using pitfall trapping, litter extraction and sweep sampling. A total of 237 spider morphospecies from 37 families were collected using this composite sampling strategy. The abundance, richness, composition and structure of spider assemblages in grazed and ungrazed forest sites were compared and related to a range of environmental variables. Spider assemblages responded to a range of environmental factors at the landscape, habitat and microhabitat scales. Forest type, spatial relationships and habitat variability at the site scale were more important in determining spider assemblages than localized low‐intensity grazing and burning. However, it is possible that a threshold intensity of grazing may exist, above which spiders respond to grazing and burning. Although low‐intensity grazing and burning may not affect spider assemblages below a threshold stocking rate, that stocking rate has yet to be established.     

Immunocompetent Infants as a Human Reservoir for Pneumocystis jirovecii: Rapid Screening by Non-Invasive Sampling and Real-Time PCR at the Mitochondria1 Large Subunit rRNA Gene

ABSTRACT. We tested a real-time PCR assay targeting the Pneumocystis jirovecii mitochondria1 large subunit rRNA gene on 240 archival nasopharyngeal aspirates from non-immunosuppressed infants. The sensitivity of this assay appeared close to that of a conventional nested-PCR assay targeting the same locus. Because of its one-step procedure, and its sensitivity and rapidity, the real-time PCR assay is particularly suitable for screening individuals parasitized by P. jirovecii within large populations.