Seroprevalence of Bactericidal,Specific IgG Antibodies and Incidence of Meningitis Due to Group A Neisseria meningitidis by Age in Burkina Faso 2008

Background

We investigated serological correlates of protection against Neisseria meningitidis serogroup A (NmA) in Burkina Faso before the introduction of NmA conjugate vaccine.

Methodology/Principal Findings

We collected blood from a representative sample (N = 1022) of Bobo-Dioulasso residents. Sera were evaluated for serum bactericidal antibody (SBA) activity against NmA strains of immunotype L11 (F8238) and L10 (3125) and NmA-specific IgG. Seroprevalence was compared to the age-specific NmA meningitis incidence in Bobo-Dioulasso during March 2007–February 2008. Meningococcal carriage was evaluated in a subset (N = 538). Geometric mean titres (GMT)/concentrations (GMC) of SBA and NmA-specific IgG increased with age, peaking around age 20 years. Overall, 70% of our sample had NmA-specific IgG ≥2 ug/mL. Meningitis incidence was highest in those aged <6 months and 5–19 years. No NmA carriers were found. Compared to the reference strain SBA, GMTs were higher against a locally isolated strain and around 40-fold lower against Dutch strain 3125.

Conclusions/Significance

This study provides estimates of natural immunity to NmA, according to a variety of antibody measures, which will be helpful in ascertaining antibody persistence after MenAfriVac™ introduction. Age-specific seroprevalence of reference strain SBA titres most likely reflects exposure to meningococci and consecutive reactive immunity. We could not define any serological correlate of protection.     

The GAG database: A new resource to gather genomic annotation cross-references

Several institutions provide genomic annotation data, and therefore these data show a significant segmentation and redundancy. Public databases allow access, through their own methods, to genomic and proteomic sequences and related annotation. Although some cross-reference tables are available, they don't cover the complete datasets provided by these databases. The Genomic Annotation Gathering project intends to unify annotation data provided by GenBank and Ensembl. We introduce an intra-species, cross-bank method. Generated results provide an enriched set of cross- references. This method allows for identifying an average of 30% of new cross-references that can be integrated to other utilities dedicated to analyzing related annotation data. By using only sequence comparison, we are able to unify two datasets that previously didn't share any stable cross-bank accession method. The whole process is hosted by the GenOuest platform to provide public access to newly generated cross-references and to allow for regular updates (http://gag.genouest.org).     

Genetic diversity of Southeastern Nigerien date palms reveals a secondary structure within Western populations

Date palm (Phoenix dactylifera L.) is mainly cultivated for its edible fruit and is of great socio-economic importance for the populations of arid zones. Analysis of the date palm genetic diversity in the Old World had revealed a strong genetic structure with the existence of two gene pools, one Eastern comprising Asia and Djibouti, and one Western, consisting of North African accessions. So far, mainly date palm populations from countries within the Maghreb and the Middle East were characterized, but no information from the Sahel was included. Here, we present the genetic diversity of date palms from Southeastern Niger. The DNA of 113 date palm accessions were analyzed and compared with a database containing the genetic information of 248 accessions from the Old World. The diversity generated from microsatellite markers was compared to that of the same loci of both the Eastern and Western genetic pools. Our results show that date palms from Southeastern Niger constitute a unique group with a high level of genetic diversity. Moreover, even though this group is included in the Western genetic pool, it shows a specific originality which differentiates it from other Western populations. It also shows one of the lowest admixture levels of the Western pool. Global analysis showed a secondary genetic structure within the Western pool highlighting a new genetic group located in Southeastern Niger that distinguishes itself from the North African group.     

Hydraulic redistribution study in two native tree species of agroforestry parklands of West African dry savanna

Hydraulic redistribution (HR) in karité (Vitellaria paradoxa) and néré (Parkia biglobosa) tree species was studied by monitoring the soil water potential (ψ_s) using thermocouple psychrometers at four compass directions, various distances from trees and at different soil depths (max depth 80 cm) during the dry seasons of 2004 and 2005. A modified WaNuLCAS model was then used to infer the amount of water redistribued based on ψ_s values. Tree transpiration rate was also estimated from sap velocity using thermal dissipative probes (TDP) and sapwood area, and the contribution of hydraulically redistributed water in tree transpiration was determined. The results revealed on average that 46% of the psychrometer readings under karité and 33% under néré showed the occurrence of HR for the two years. Soil under néré displayed significantly lower fluctuations of ψ_s (0.16 MPa) compared to soil under karité (0.21 MPa). The results of this study indicated that the existence of HR leads to a higher ψ_s in the plant rhizosphere and hence is important for soil water dynamics and plant nutrition by making more accessible the soluble elements. The simulation showed that the amount of water redistributed would be approximately 73.0 L and 247.1 L per tree per day in 2005 for karité and néré, and would represent respectively 60% and 53% of the amount transpired a day. Even though the model has certainly overestimated the volume of water hydraulically redistributed by the two species, this water may play a key role in maintaining fine root viability and ensuring the well adaptation of these species to the dry areas. Therefore, knowledge of the extent of such transfers and of the seasonal patterns is required and is of paramount importance in parkland systems both for trees and associated crops.     

Control of phytoplankton–bacteria interactions by stoichiometric constraints

In aquatic ecosystems, phytoplanktonic organisms are the major primary producers and bacteria the major decomposers. The interactions between phytoplankton and bacteria may be dependent on nutrient resources. Anthropogenic inputs, by modifying nutrient status and stoichiometry of lakes, might induce changes in these interactions, and thus, could have many consequences on some ecological processes such as primary production or importance of microbial recycling activity.
To test this hypothesis, we grew an axenic strain of a green alga, Scenedesmus obliquus , in a range of stoichiometric situations, in absence and in presence of a natural bacterial community. Here, we show that different phytoplankton limiting factors can generate between algae and bacteria either competition for nutrients in phosphorus-limited conditions, commensalism in nitrogen-limited conditions, or mutualism in eutrophic nutrient-unlimited conditions. Causes of these different interaction types are discussed, in particular the hypothesis that in very eutrophic systems with high primary production, mutualism between algae and bacteria could be due to CO₂ supply by heterotrophic respiration to inorganic carbon limited algae. Some probable consequences for aquatic ecosystems functioning are proposed.     

Differences between banded thickets (tiger bush) at two sites in West Africa

Abstract. This paper deals with the influence of edaphic conditions on the spatial structure of banded thickets or tiger bush (brousse tigrée). It is based on two sites in West Africa, with similar climatic conditions but located on contrasting substrates. The spatial structure was described with standardized characteristics including thicket spacing, thicket/inter‐thicket contrast, upslope/downslope asymmetry and species zonation throughout the vegetation band. Recruitment and senescence features of woody stands were emphasized in order to understand current dynamics. Data were collected on transects oriented perpendicular to the contours and so to the thickets as well. A standardized analytical procedure was applied to data from both sites to ensure consistent and thorough delineation of thickets. The overall periodicity of thickets, the woody flora and the dominant species Combretum micranthum were similar at the two sites. However, thicket spacing, thicket/inter‐thicket contrast and upslope/downslope floristic asymmetry of the thickets were higher in the less favourable site. Also seedlings were less abundant, with a greater dependence on pre‐existing thickets. Not all banded vegetation systems show sharp contrasts and are strongly asymmetric, since such characteristics are likely to be reinforced by adverse environmental conditions. As a consequence, current dynamics may be more diverse than expected. Quantified inter‐site comparisons can greatly help to classify African banded vegetation systems and to discuss potential dynamic outcomes.     

Comparative analysis of plants close to houses in urban and rural areas in the littoral region of Cameroon

Global declines in biodiversity, together with widespread degradation of ecosystem services, have led to urgent calls to safeguard. Humans maintain plants around their houses to increase their quality of life. In the present study, 90 and 30 plots of 50 m² each were studied in urbanised and rural areas in Cameroon. In each plot, vascular plant species were identified and their coefficient of abundance–dominance was determined. Different diversity indices were calculated to compare the flora of urbanised and rural areas as well as the distribution of plants. A total of 119 species belonging to 95 genera and 45 families were sampled. Shannon–Weaver diversity index, Pielou and Sheldon values vary when taking into account not only erected or wooded plants, but also herbs and erected or wooded plants. Plots near houses in urban areas comprised weeds, ornamentals and fruits, whereas in rural areas medicinal or edible plants dominated. Based upon the results, we conclude that the use of plants as food, medicinal resources or for other purposes, might be helpful for biodiversity conservation, ecosystem services, the management of resources and to fight poverty. However, the composition of the flora is likely to change as urbanisation proceeds.     

Global analysis of circulating immune cells by matrix-assisted laser desorption ionization time-of-flight mass spectrometry

Background

MALDI-TOF mass spectrometry is currently used in microbiological diagnosis to characterize bacterial populations. Our aim was to determine whether this technique could be applied to intact eukaryotic cells, and in particular, to cells involved in the immune response.

Methodology/Principal Findings

A comparison of frozen monocytes, T lymphocytes and polymorphonuclear leukocytes revealed specific peak profiles. We also found that twenty cell types had specific profiles, permitting the establishment of a cell database. The circulating immune cells, namely monocytes, T lymphocytes and polymorphonuclear cells, were distinct from tissue immune cells such as monocyte-derived macrophages and dendritic cells. In addition, MALDI-TOF mass spectrometry was valuable to easily identify the signatures of monocytes and T lymphocytes in peripheral mononuclear cells.

Conclusions/Significance

This method was rapid and easy to perform, and unlike flow cytometry, it did not require any additional components such as specific antibodies. The MALDI-TOF mass spectrometry approach could be extended to analyze the cell composition of tissues and the activation state of immune cells.