Identification of interaction partners of the cytosolic polyproline region of CD95 ligand (CD178)

The CD95/Fas/Apo-1 ligand (CD95L, CD178) induces apoptosis through the death receptor CD95. CD95L was also described as a co-stimulatory receptor for T-cell activation in mice in vivo. The molecular basis for the bidirectional signaling capacity and directed expression of CD95L is unknown. In the present study we identify proteins that precipitate from T-cell lysates with constructs containing fragments of the CD95L cytosolic tail. The determined peptide mass fingerprints correspond to Grb2, actin, beta-tubulin, formin binding protein 17 (FBP17) and PACSIN2. Grb2 had been identified as a putative mediator of T-cell receptor-to-CD95L signaling before. FBP17 and PACSIN2 may be associated with expression and trafficking of CD95L. When overexpressed, CD95L co-precipitates with FBP17 and PACSIN. Protein-protein interactions are mediated via Src homology 3 (SH3) domain binding to the polyproline region of CD95L and can be abolished by mutation or deletion of the respective SH3 domain.     

Molecular Characterization and SNP Development for the Porcine Il6 and Il10 Genes

Different cytokines are secreted in response to specific microbial molecules referred to as pathogen associated molecular patterns (PAMPs). Interleukin 6 (IL6) and interleukin 10 (IL10), both secreted by macrophages and lymphocytes, play a central role in the immunological response. In this work we obtained the genomic structure and complete DNA sequence of the porcine IL6 and IL10 genes and identified polymorphisms in the genomic sequences of these genes on a panel of ten different pig breeds. Comparative intra- and interbreed sequence analysis revealed a total of eight polymorphisms in the porcine IL6 gene and 21 in the porcine IL10 gene, which include single nucleotide polymorphisms (SNPs) and insertion deletion polymorphisms (indels). Additionally, the chromosomal localization of the IL10 gene was determined by FISH and RH mapping.     

Cercopithecidae from the Pliocene Chiwondo beds, Malawi-rift

There are a total of 16 fossil cercopithecid specimens, representing at least 10 individuals, from the Chiwondo Beds of northern Malawi. The majority of this material is derived from the Middle Pliocene Unit 3A, but one specimen is from the Early Pliocene Unit 2. This latter specimen is from a papionin of indeterminate genus similar in size to Parapapio ado and Pliopapio alemui. Among the specimens from Unit 3A, two species can be diagnosed: an indeterminate species of Theropithecus, and a species of Parapapio similar in dental size to P. broomi. Neither of the genera from Unit 3A are exclusive to either East Africa or South Africa. Their relative abundances, however, are more similar to Middle Pliocene South African sites where Parapapio is the most common primate genus, and Theropithecus is comparatively rare. This is in contrast to similarly-aged East African sites where Theropithecus is by far the most abundant genus.     

Monitoring the spatial and temporal dynamics of a community of the tree-root endophyte Phialocephala fortinii s.l

Phialocephala fortinii sensu lato was isolated from Picea abies roots that had been collected from the same 3 x 3-m forest plot in 2001 and 2004, to examine the spatial and temporal dynamics of this fungal community. RFLP analysis was used to define the multilocus haplotype (MLH) of each isolate. Pielou's measure of association and chi(2) tests of independence were employed to examine the randomness of patterns of spatial distribution of MLH observed in 2001 and 2004. Population differentiation between the two samplings was tested using the G(ST) statistic. In 2001, 144 strains of 28 MLH were isolated; in 2004, 139 strains of 29 MLH. Abundant MLH in 2001 also prevailed in 2004, and the same two cryptic species were dominant in both collections. The probability of being isolated in both years increased with increasing frequency of an MLH. The patterns of spatial distribution of most MLH did not differ between years. The G(ST) values indicated identity of the two collections. Communities of P. fortinii sensu lato remain spatially and genetically stable for at least 3 yr.     

A regressive model analysis of congenital sensorineural deafness in German Dalmatian dogs

The objective of the present study was to analyze the mode of inheritance for congenital sensorineural deafness (CSD) in German Dalmatian dogs by consideration of association between phenotypic breed characteristics and CSD. Segregation analysis with regressive logistic models was employed to test for different mechanisms of genetic transmission. Data were obtained from all three Dalmatian kennel clubs associated with the German Association for Dog Breeding and Husbandry (VDH). CSD was tested by veterinary practitioners using standardized protocols for Brainstem Auditory-Evoked Response (BAER). The sample included 1899 Dalmatian dogs from 354 litters in 169 different kennels. BAER testing results were from the years 1986 to 1999. Pedigree information was available for up to seven generations. The segregation analysis showed that a mixed monogenic-polygenic model including eye color as covariate among all other tested models best explained the segregation of affected animals in the pedigrees. The recessive major gene segregated in dogs with blue and brown eye color as well as in dogs with and without pigmented coat patches. Models which took into account the occurrence of patches, percentage of puppies tested per litter, or inbreeding coefficient gave no better adjustment to the most general (saturated) model. A procedure for the simultaneous prediction of breeding values and the estimation of genotype probabilities for CSD is expected to improve breeding programs significantly.     

Experimental summer drought reduces soil CO2 effluxes and DOC leaching in Swiss grassland soils along an elevational gradient

Soil moisture affects belowground activity in grasslands, but the effects of summer drought on different soil C fluxes is uncertain. Soil respiration (SR), dissolved organic carbon (DOC) leaching and their components may all respond differently and drought effects will interact with other factors such as temperature, making a priori predictions of soil C balances difficult. In this study, we used rain shelters to simulate summer droughts by reducing annual precipitation by around 30 % in three managed grassland sites at 400, 1,000 and 2,000 m a.s.l. in Switzerland covering a gradient in mean annual temperatures of 7.5 °C. During the growing season, we quantified the impacts of drought on SR, DOC leaching, litter decomposition and the contribution of ¹³C-depleted litter to DOC fluxes. Along the elevational gradient, SR rates did not decrease with increasing altitude. Thus, SR was higher at a given temperature at higher altitudes, which probably reflects more labile soil C and hence greater substrate availability in a colder climate. Fluxes of DOC at 5 cm depth were a magnitude smaller than SR and did not show a pattern with elevation. At all altitudes, the experimental summer drought significantly reduced SR rates by 25–57 % and DOC leaching by 80–100 %, with a declining contribution of ¹³C-depleted litter-DOC. The remaining litter mass after drought was two to seven times larger as compared to the control. We did not observe a strong C release upon rewetting and hence, there was no compensation for the reduced soil C fluxes during drought. The more sensitive drought response in the litter layer than in the deeper soil and the declining DOC fluxes indicate an altered soil C balance with a C preservation in the topsoil, but ongoing losses of probably ‘older’ C in subsoils under drought.