More efficient estimation of plant biomass

Question: The optimal use of the point intercept method (PIM) for efficient estimation of plant biomass has not been addressed although PIM is a commonly used method in vegetation analysis. In this study we compare results achieved using PIM at a range of efforts, we assess a method for calculating these results that are new with PIM and we provide a formula for planning the optimal use of PIM. Location: Northern Norway. Methods: We collected intercept data at a range of efforts, i.e. from one to 100 pins per 0.25 m² plots, on three plant growth forms in a mountain meadow. After collection of intercept data we clipped and weighed the plant biomass. The relationship between intercept frequency and weighed biomass (b) was estimated using both a weighted linear regression model (WLR) and an ordinary linear regression model (OLR). The accuracy of the estimate of biomass achieved by PIM at different efforts was assessed by running computer simulations at different pin densities. Results: The relationship between intercept frequency and weighed biomass (b) was far better estimated using WLR compared to the normally used OLR. Efforts above 10 pins per 0.25 m² plot had a negligible effect on the accuracy of the estimate of biomass achieved by PIM whereas the number of plots had a strong effect. Moreover, for a given level of accuracy, the required number of plots varied depending on plant growth form. We achieved similar results to that of the computer simulations when applying our WLR based formula. Conclusion: This study shows that PIM can be applied more efficiently than was done in previous studies for the purpose of plant biomass estimation, where several plots should be analysed but at considerably less effort per plot. Moreover, WLR rather than OLR should be applied when estimating biomass from intercept frequency. The formula we have deduced is a useful tool for planning plant biomass analysis with PIM.     

Modification of tomato andAspergillus niger pectinesterases with diethyl pyrocarbonate

The role of histidine residues in pectinesterases was evaluated by monitoring the sensitivity to modification with diethyl pyrocarbonate in the tomato andAspergillus niger enzymes. Different and incomplete losses of enzyme activity were obtained. Inactivation of the enzymes was proportional to the histidine content (two in the tomato T1 form, six in theAspergillus form), suggesting that accessible histidine residues do not have active-site functions in these pectinesterases, but contribute to the overall structural stability. Lack of His roles in common between the enzyme forms is in agreement with the structures of pectinesterases having no conserved His residues.     

Intercellular adhesion in butyrate-treated HeLa S3 cultures : Flow cytometric analysis

The application of DNA flow cytometry (FCM) for analysis of sodium butyrate-induced intercellular adhesion in human carcinoma (HeLa S3) cell cultures is described. To prepare cell suspensions for FCM, the monolayers of cells were treated with medium containing 10% serum, 0.2% non-ionic detergent Triton X-100 and 1 μg/ml DNA fluorochrome 4,6′-diamidino-2-phenylindole (DAPI). Total numbers of single cells, and aggregates containing two, three, four or more cells, were determined from DNA histograms. In cultures treated with 5 mM butyrate for 16 h, more than 80% of the cells were aggregated. Intercellular adhesion began to appear 8 h after addition of butyrate, was maximal at 16–24 h and stable in the presence of butyrate, but disappeared 24 h after its removal. Treatment with EDTA (0.2%) dissociated only 50%, whereas trypsin (0.1%) separated all cell aggregates into single cells. Actinomycin D (actD) (0.5 μg/ml) prevented cell adhesion while blocking of cells in S phase with 250 μM 5-fluorouracil or 10 μM methotrexate did not interfere with aggregation. The number of cell aggregates estimated from DNA histograms of butyrate-treated HeLa S3 cultures was the same after staining with DAPI in the presence of Triton X-100 or after vital staining with Hoechst 33342. The DNA content was used as a marker to estimate the cellular composition of aggregates in mixed cultures of HeLa S3 cells and human fibroblasts (U cells). Intercellular adhesion in these cultures was seen only between HeLa S3 cells, indicating specificity of butyrate-induced cell aggregation. FCM provides fast automatic measurement of cell aggregate formation, estimates frequency of aggregates containing different cell numbers, shows participation of cells at different cycle phases in aggregates, and allows the detection of homotypic from heterotypic cell aggregates if the interacting cells have different DNA ploidy.     

Placing butterflies on the map – testing regional geographical resolution of three stable isotopes in Sweden using the monophagus peacock Inachis io

Stable isotope analyses of tissues have been used to help delineate natal regions and routes of migratory animals. The foundations of such studies are isotopic gradients or differences representing geographic regions and habitat used by the organism that are retained in selected tissues. We sampled peacock butterflies Inachis io on a regional level in southern Sweden to study natural variation and the resolving power of the stable isotope method to delineate individuals from known areas on a smaller scale than has typically been used in previous studies. Hydrogen (δD), carbon (δ¹³C) and nitrogen (δ¹⁵N) isotopes were obtained from butterflies at seven different locations in an area of 250×250 km over three years (2002–2004). We found sufficient isotopic differences on this regional scale to delineate approximate origins. Of the three isotopes, deuterium showed good discrimination between sites, carbon isotopes showed weaker differentiation, whereas nitrogen isotopes proved unsuitable for small scale studies in this region due to high and unpredictable variation. We found there was enough variation in δD between years to prevent a general application of the technique to resolve sub‐regional variation. Substantial part of this variation was probably caused by seasonal changes in δD of precipitation. These differences produce significant variation in δD between years in animals having short and variable tissue development times, and are difficult to estimate in natural situations. We conclude that stable isotopes are potentially powerful predictors for studies of migratory butterflies in Europe. However, without good knowledge about the sampled individuals’ previous life‐history, a lot of the natural environmental variation in tissue δD cannot be controlled for. In the case of migratory species, this information is difficult to obtain, making the confidence intervals for prediction of natal areas fairly wide and probably only suitable for longer distance migration.     

Rhodium(I) hydrogenation in water: Kinetic studies and the detection of an intermediate using C{H} PHIP NMR spectroscopy

The mechanism for hydrogenation of dimethylmaleate in water using cationic rhodium complexes with water-soluble bi-dentate phosphines has been investigated using kinetics and a novel method for the indirect detection of intermediates in catalytic hydrogenation reactions, whereby a late intermediate was detected. A mechanism is proposed involving fast, irreversible substrate binding followed by a rate-determining reaction with dihydrogen.     

Environmental contamination by vancomycin resistant enterococci (VRE) in Swedish broiler production

Background  

Vancomycin resistant enterococci are a frequent cause of nosocomial infections and their presence among farm animals is unwanted. Using media supplemented with vancomycin an increase in the proportion of samples from Swedish broilers positive for vancomycin resistant enterococci has been detected. The situation at farm level is largely unknown. The aims of this study were to obtain baseline knowledge about environmental contamination with vancomycin resistant enterococci in Swedish broiler production and the association between environmental contamination and colonisation of birds.