Glioma Cell and Astrocyte Co-cultures As a Model to Study Tumor–Tissue Interactions: A Review of Methods

Astrocytes are a dominant cell type that envelopes the glioma bed. Typically, that is followed by formation of contacts between astrocytes and glioma cells and accompanied by change in astrocyte phenotype, a phenomenon known as a ‘reactive astrogliosis.’ Generally considered glioma-promoting, astrocytes have many controversial peculiarities in communication with tumor cells, which need thorough examination in vitro. This review is devoted to in vitro co-culture studies of glioma cells and astrocytes. Firstly, we list several fundamental works which allow understanding the modalities of co-culturing. Cell-to-cell interactions between astrocytes and glioma cells, the roles of astrocytes in tumor metabolism, and glioma-related angiogenesis are reviewed. In the review, we also discuss communications between glioma stem cells and astrocytes. Co-cultures of glioma cells and astrocytes are used for studying anti-glioma treatment approaches. We also enumerate surgical, chemotherapeutic, and radiotherapeutic methods assessed in co-culture experiments. In conclusion, we underline collisions in the field and point out the role of the co-cultures for neurobiological studies.     

Production of the antibiotic cyanobacterin LU-1 by Nostoc linckia CALU 892 (cyanobacterium)

Cyanobacterin LU-1, produced by Nostoc linckia CALU 892, inhibits the growth of many cyanobacteria and eukaryotic algae. The minimum effective dose of a crude preparation to Synechococcus sp. R-2 is ca 1 µg ml^?1. The antibiotic hinders cell division and light-dependent oxygen evolution in Synechococcus sp. R-2 (PCC 7942) cells. It is not active against heterotrophic bacteria and fungi, and is non-toxic to mice. Purified cyanobacterin LU-1 contains a nitrous heterocycle with sugar and phenolic substituents. Cyanobacterin LU-1 accumulates in the medium during the course of growth, although not in direct proportion to cell density. Productivity of the culture depends on temperature.     

Study of non-consumptive mortality of Crustacean zooplankton in a Siberian reservoir using staining for live/dead sorting and sediment traps

We studied non-consumptive (non-predatory) mortality of Daphnia and Cyclops vicinus during four sampling seasons. Mortality estimations were based on live/dead sorting using special staining and measurements of sedimentation rates for dead individuals, depended on wind speed. Original equations were used for calculations. The estimated specific non-consumptive mortality never had biologically senseless negative values, which were often obtained on the basis of the other ways of mortality estimations, and was in a good agreement with other components of population dynamics. As found, the non-consumptive mortality was the important, often the determinant component of the zooplankton population dynamics.     

Changes in concentraions of free radicals and amino acids in developing maize inflorescences and fruits

The changes in the concentration of free radicals and bound amino acids in developing maize inflorescences and fruits were ascertained. The concentration rises markedly when tissues disintegrate and desiccate. A slight increase in the concentration may be ascribed to the rise of metabolic processes connected with kernel formation.     

Conformational variability of recombination R-triplex formed by the mammalian telomeric sequence

Alignment of three nucleic acids strands, in which the third strand is identical to one of the DNA duplex strands, occurs in various cellular systems. In the case of telomeric t-loops, recognition between the DNA duplex and the homologous single strand is likely to be mediated by proteins through formation of the transient recombination-type R-triplex. Earlier, using 2-aminopurine as a fluorescent reporting base, we evaluated the thermodynamic characteristics of intramolecular R-triplex formed by a mixed nucleotide sequence. Here, we used this approach to explore a propensity of the telomeric TTAGGG repeat to form the R-triplex. The circular dichroism spectral changes detected upon formation of the R-triplex suggest that this process is accompanied by specific conformational changes in DNA, including a local destabilization of the target duplex next to a GGG run revealed by the fluorescence of the reporting 2-aminopurine base. Surprisingly, stability of the R-triplex formed by telomeric sequence depends strikingly on the counter ion, being higher for Na⁺ than for Li⁺. Taken together these findings indicate a significant conformational variability of telomeric DNA in the context of recombination-type R-triplex, a phenomenon of possible biological relevance.     

Topology of the disulfide bonds in the antiviral lectin scytovirin

The antiviral lectin scytovirin (SVN) contains a total of five disulfide bonds in two structurally similar domains. Previous reports provided contradictory results on the disulfide pairing in each individual domain, and we have now re‐examined the disulfide topology. N‐terminal sequencing and mass spectrometry were used to analyze proteolytic fragments of native SVN obtained at acidic pH, yielding the assignment as Cys7–Cys55, Cys20–Cys32, Cys26–Cys38, Cys68–Cys80, and Cys74–Cys86. We also analyzed the N‐terminal domain of SVN (SD1, residues 1–48) prepared by expression/oxidative folding of the recombinant protein and by chemical synthesis. The disulfide pairing in the chemically synthesized SD1 was forced into predetermined topologies: SD1A (Cys20–Cys26, Cys32–Cys38) or SD1B (Cys20–Cys32, Cys26–Cys38). The topology of native SVN was found to be in agreement with the SD1B and the one determined for the recombinant SD1 domain. Although the two synthetic forms of SD1 were distinct when subjected to chromatography, their antiviral properties were indistinguishable, having low nM activity against HIV. Tryptic fragments, the “cystine clusters” [Cys20–Cys32/Cys26–Cys38; SD1] and [Cys68–Cys80/Cys74–C‐86; SD2], were found to undergo rapid disulfide interchange at pH 8. This interchange resulted in accumulation of artifactual fragments in alkaline pH digests that are structurally unrelated to the original topology, providing a rational explanation for the differences between the topology reported herein and the one reported earlier (Bokesh et al., Biochemistry 2003;42:2578–2584). Our observations emphasize the fact that proteins such as SVN, with disulfide bonds in close proximity, require considerable precautions when being fragmented for the purpose of disulfide assignment.     

Developmental and metabolic changes induced by anoxia in diapausing and non-diapausing flesh fly pupae

Summary Anaerobic metabolism was compared in nondiapausing (ND) and diapausing (D) pupae of the flesh fly,Sarcophage crassipalpis using in vivo¹³C NMR spectroscopy. Anoxia-induced changes in the development of ND and D pupae were correlated with oxidative metabolism and mitochondrial integrity. ND pupae tolerated 1 day of anoxia without any obvious developmental effect, while D pupae tolerated up to 6 days of anoxia. Longer exposure to anoxia (3 days in ND pupae and up to 14 days in D pupae) allowed development to the pharate adult stage but precluded eclosion. Four-day anoxia applied to ND pupae during 4–6 days post-pupariation arrested development in a stage indistinguishable from diapause. This morphological stasis was accompanied by 80% suppression of oxidative metabolism and a 100% increase in glycerol concentration. However, unlike a true diapause, this arrest could not be terminated with 20-hydroxyecdysone or hexane. Four-day anoxia treatment applied to D pupae stimulated development and raised their oxygen consumption. The anoxia-induced changes in oxidative metabolism were not accompanied by mitochondrial changes. Exposure to 95%PO₂ atmosphere had no apparent developmental or metabolic effects on ND or D pupae. Major metabolites (lipids, trehalose, glycogen, glycerol, glutamine, and alanine) were detected in the ND and D pupae but their rates of turnover differed. Anoxia induced synthesis of glycerol and alanine in both D and ND pupae. Injected labeled glucose was incorporated primarily into trehalose and glycogen by both D and ND pupae. The rate of incorporation in ND pupae was approximately twice that observed in D pupae. Anoxia resulted in glycerol and alanine synthesis in both groups of pupae, but more glycerol was labeled in ND pupae and more alanine in D pupae. Glycogen and trehalose were depleted in the D pupae under anoxia. Cold acclimation had no effect on the steady-state or rate of synthesis of metabolites.