HP30‐2, a mitochondrial PRAT protein for import of signal sequence‐less precursor proteins in Arabidopsis thaliana

Chloroplasts and mitochondria contain a family of putative preprotein and amino acid transporters designated PRAT. Here,we analyzed the role of two previously characterized PRAT protein family members,encoded by At3g49560(HP30) and At5g24650(HP30-2),in planta using a combination of genetic,cell biological and biochemical approaches. Expression studies and green fluorescent protein tagging identified HP30-2 both in chloroplasts and mitochondria,whereas HP30 was located exclusively in chloroplasts. Biochemical evidence was obtained for an association of mitochondrial HP30-2 with two distinct protein complexes,one containing the inner membrane translocase TIM22 and the other containing an alternative NAD(P)H dehydrogenase subunit(NDC_1)implicated in a respiratory complex 1-like electron transport chain. Through its association with TIM22,HP30-2 is involved in the uptake of carrier proteins and other,hydrophobic membrane proteins lacking cleavable NH2-terminal presequences,whereas HP30-2's interaction with NDC1 may permit controlling mitochondrial biogenesis and activity.     

Reassessment of the Systematic Status of Miamira Bergh, 1875 and Orodoris Bergh, 1875 (Nudibranchia: Chromodorididae) in Light of Phylogenetic Analysis

The external morphology and anatomy of the opisthobranch gastropodsMiamira sinuata (van Hasselt, 1824) and Orodoris miamiranaBergh, 1875, the type species of the genera Miamira Bergh, 1875and Orodoris Bergh, 1875, and their phylogenetic relationshipsare studied. The phylogeny obtained supports the placement ofM. sinuata and O. miamirana in the genus Ceratosoma J. E. Gray, 1850.Therefore, Miamira and Orodoris become synonyms of the seniorvalid name Ceratosoma. In addition, the family name MiamiridaeBergh, 1891, based on Miamira, is newly recognized as a synonymof Chromodorididae Bergh, 1891. Ceratosoma sinuata and C. miamirana are more closely relatedto the highly derived Ceratosoma alleni than to other membersof the genus. C. miamirana appears to present reversal to theplesiomorphic state in the body shape and has secondarily lostits mantle glands. (Received 5 January 1998; accepted 23 April 1998)     

Effects of receptor concentration, media pH and storage on nicotinic receptor-transmitted signal in a fiber-optic biosensor

The optical signal generated by a nicotinic acetylcholine receptor (nAChR)-based optical biosensor was dependent on the density of toxin binding sites (i.e. receptors) immobilized on the surface of the fiber. The maximum density of nAChR receptors absorbed on the optic fibers, measured using [125I]-alpha-bungarotoxin (the alpha-neurotoxin of the Bungarus snake venom) binding, was 6.2 pmol of receptor sites per fiber. Incubation time, that was required for maximal noncovalent immobilization of the receptor protein on the fiber, was less than 10 min. Immobilization of the nAChR protein on the quartz fiber was affected by pH of the medium, with pH 3.5 as the optimal. Stored in phosphate buffered saline (PBS) or in a dry nitrogen atmosphere, the nAChR optical sensor showed no loss of activity over the first 3 days, then showed a slow but gradual loss in activity (45% over the next 30 days).     

Adiponectin Receptor-1 C-Terminal Fragment (CTF) in Plasma: Putative Biomarker for Diabetes

Introduction

Polypeptide fragments from cell surface receptors when found in plasma may be indicators of receptor regulation in disease conditions. It is known that subjects with diabetes have significantly lower plasma concentrations of adiponectin, a hormone released by adipose tissue, compared with nondiabetic controls. This hormone interacts with cell surface receptors in muscle (AdipoR1) and liver (AdipoR2).

Methods

We analyzed the relative distribution of specific fragments of AdipoR1 in healthy and diabetic individuals using an immunoaffinity mass spectrometry approach. We used antibodies raised against AdipoR1 immobilized on pre-activated protein chip surfaces to determine the molecular weights of bound polypeptide fragments using immunomass spectrometry (immuno-MS).

Results

Initially, immuno-MS analyses using a polyclonal antibody revealed two peaks (m/z 3,902 and 7,812) in plasma from normal, healthy individuals (n?=?5) that were not present in the plasma of diabetics (n?=?5). To confirm the detection of these fragments, a monoclonal antibody was developed against the last 25 amino acids of the AdipoR1 C-terminal fragment (CTF). Using the immuno-MS method, the monoclonal antibody detected the AdipoR1 CTF (m/z 3475) in all healthy controls (n?=?10), but did not detect these fragments in the diabetic patients (n?=?10).

Discussion

These preliminary observations suggest that the plasma levels of this receptor fragment may serve as an indicator of diabetic condition.     

Autonomous bacterial localization and gene expression based on nearby cell receptor density

Escherichia coli were genetically modified to enable programmed motility, sensing, and actuation based on the density of features on nearby surfaces. Then, based on calculated feature density, these cells expressed marker proteins to indicate phenotypic response. Specifically, site‐specific synthesis of bacterial quorum sensing autoinducer‐2 (AI‐2) is used to initiate and recruit motile cells. In our model system, we rewired E. coli's AI‐2 signaling pathway to direct bacteria to a squamous cancer cell line of head and neck (SCCHN), where they initiate synthesis of a reporter (drug surrogate) based on a threshold density of epidermal growth factor receptor (EGFR). This represents a new type of controller for targeted drug delivery as actuation (synthesis and delivery) depends on a receptor density marking the diseased cell. The ability to survey local surfaces and initiate gene expression based on feature density represents a new area‐based switch in synthetic biology that will find use beyond the proposed cancer model here.     

Quaternary climate changes explain diversity among reptiles and amphibians

It is widely believed that contemporary climate determines large-scale patterns of species richness. An alternative view proposes that species richness reflects biotic responses to historic climate changes. These competing "contemporary climate" vs "historic climate" hypotheses have been vigorously debated without reaching consensus. Here, we test the proposition that European species richness of reptiles and amphibians is driven by climate changes in the Quaternary. We find that climate stability between the Last Glacial Maximum (LGM) and the present day is a better predictor of species richness than contemporary climate; and that the 0°C isotherm of the LGM delimits the distributions of narrow-ranging species, whereas the current 0°C isotherm limits the distributions of wide-ranging species. Our analyses contradict previous studies of large-scale species richness patterns and support the view that "historic climate" can contribute to current species richness independently of and at least as much as contemporary climate.     

Detection of nicotinic receptor ligands with a light addressable potentiometric sensor.

The nicotinic acetylcholine receptor, purified from Torpedo electric organ, was coupled to a light addressable potentiometric sensor (LAPS) to form a LAPS-receptor biosensor. Receptor-ligand complexes containing biotin and urease were captured on a biotinylated nitrocellulose membrane via a streptavidin bridge and detected with a silicon-based sensor. Competition between biotinylated alpha-bungarotoxin and nonbiotinylated ligands formed the basis of this assay. This biosensor detected both agonists (acetylcholine, carbamylcholine, succinylcholine, suberyldicholine, and nicotine) and competitive antagonists (d-tubocurarine, alpha-bungarotoxin, and alpha-Naja toxin) of the receptor with affinities comparable to those obtained using radioactive ligand binding assays. Consistent with agonist-induced desensitization of the receptor, the LAPS-receptor biosensor reported a time-dependent increase in affinity for the agonist carbamylcholine as expected, but not for the antagonists.     

New developments in CLAMP: Calibration using global gridded meteorological data

Climate Leaf Analysis Multivariate Program (CLAMP) is a versatile technique for obtaining quantitative estimates for multiple terrestrial palaeoclimate variables from woody dicot leaf assemblages. To date it has been most widely applied to the Late Cretaceous and Tertiary of the mid- to high latitudes because of concerns over the relative dearth of calibration sites in modern low-latitude warm climates, and the loss of information associated with the lack of marginal teeth on leaves in paratropical to tropical vegetation. This limits CLAMP's ability to quantify reliably climates at low latitudes in greenhouse worlds of the past.One of the reasons for the lack of CLAMP calibration samples from warm environments is the paucity of climate stations close to potential calibration vegetation sites at low latitudes. Agriculture and urban development have destroyed most lowland sites and natural vegetation is now largely confined to mountainous areas where climate stations are few and climatic spatial variation is high due to topographic complexity. To attempt to overcome this we have utilised a 0.5° × 0.5° grid of global interpolated climate data based on the data set of New et al. (1999) supplemented by the ERA40 re-analysis data for atmospheric temperature at upper levels. For each location, the 3-D climatology of temperature from the ECMWF re-analysis project was used to calculate the mean lower tropospheric lapse rate for each month of the year. The gridded data were then corrected to the altitude of the plant site using the monthly lapse rates. Corrections for humidity were also made. From this the commonly returned CLAMP climate variables were calculated. A bilinear interpolation scheme was then used to calculate the climate parameters at the exact lat/long of the site.When CLAMP analyses using the PHYSG3BR physiognomic data calibrated with the climate station based MET3BR were compared to analyses using the gridded data at the same locations (GRIDMET3BR), the results were indistinguishable in that they fell within the range of statistical uncertainty determined for each analysis. This opens the way to including natural vegetation anywhere in the world irrespective of the proximity of a meteorological station.     

Granulation of digested sewage sludge in mesophilic UASB reactors treating distillery waste waters from sugar cane molasses

Five 4.02-1 UASB (Upflow Anaerobic Sludge Blanket) reactors were continuously operated at 30°C under different hydrodynamic regimes for more than 120 days. The effect of the upflow liquid velocity (ULV) over the range of 0.25 to 2.0 m/h on the biological characteristics of the granules formed by treating vinasses (waste water of alcohol distilleries) from sugar cane molasses was investigated constantly maintaining the volumetric loading rate (VLR) (8 g COD/l · d). Granular sludge was found at all the ULV tested. The size, shape, etc., of the granules indicated that the ULV had a considerable effect on the sludge cultivated in this type of system, thereby acting as a selection process for the biomass. The best results in relation to the time of appearance, size, shape, consistence, stability, composition, and the accumulation were observed in the ULV range between 0.25 and 0.5 m/h. Microscopic studies of the granules using optical and epifluorescence microscopes and the scanning electron micrograph (SEM) showed a heterogeneous biomass and revealed the cell characteristics.     

Netrin-1/neogenin interaction stabilizes multipotent progenitor cap cells during mammary gland morphogenesis

Netrin-1 and its receptors play an essential role patterning the nervous system by guiding neurons and axons to their targets. To explore whether netrin-1 organizes nonneural tissues, we examined its role in mammary gland morphogenesis. Netrin-1 is expressed in prelumenal cells, and its receptor neogenin is expressed in a complementary pattern in adjacent cap cells of terminal end buds (TEBs). We discovered that loss of either gene results in disorganized TEBs characterized by exaggerated subcapsular spaces, breaks in basal lamina, dissociated cap cells, and an increased influx of cap cells into the prelumenal compartment. Cell aggregation assays demonstrate that neogenin mediates netrin-1-dependent cell clustering. Thus, netrin-1 appears to act locally through neogenin to stabilize the multipotent progenitor (cap) cell layer during mammary gland development. Our results suggest that netrin-1 and its receptor neogenin provide an adhesive, rather than a guidance, function during nonneural organogenesis.