Species-specific evolution of telomeric and rDNA repeats in the tobacco composite genome

In order to investigate possible interactions between parental genomes in the composite genome of Nicotiana tabacum we have analyzed the organization of telomeric (TTTAGGG)_n and ribosomal gene (rDNA) repeats in the progenitor genomes Nicotiana sylvestris and Nicotiana tomentosiformis or Nicotiana otophora. Telomeric arrays in the Nicotiana species tested are heterogeneous in length ranging from 20 to 200 kb in N. sylvestris, from 20 to 50 kb in N. tomentosiformis, from 15 to 100kb in N. otophora, and from 40 to 160kb in N. tabacum. The patterns of rDNA repeats (18S, 5.8S, 25S RNA) appeared to be highly homogeneous and speciesspecific; no parental rDNA units corresponding to N. sylvestris, N. tomentosiformis or N. otophora were found in the genome of N. tabacum by Southern hybridization. The results provide evidence for a species-specific evolution of telomeric and ribosomal repeats in the tobacco composite genome.     

Estimation of the quantity of bacteria encapsulated in Lentikats Biocatalyst via phospholipid fatty acids content: a preliminary study

The content of phospholipid fatty acids (PLFA) was determined in samples of polyvinyl alcohol lenses (Lentikats Biocatalyst, LB) with encapsulated Paracoccus denitrificans withdrawn during long-term denitrification experiments. The total PLFA content correlated highly with specific denitrification activities of LB as well as biomass estimation based on image analyses of microscopic photos. The results confirmed the applicability of PLFA determination for estimation of the amount of living encapsulated microbial biomass during biotechnological applications.     

Species concept and morphological differentiation of strains traditionally assigned to Micrasterias truncata

The morphological and molecular differentiation of the Micrasterias truncata (Corda) ex Bréb species complex was investigated. In total, 17 strains traditionally assigned to M. truncata were isolated from different European localities (Czech Republic, southwest France, Ireland), and obtained from public culture collections. In addition, strains of the morphologically similar species, M. decemdentata (Nägeli) W. Archer and M. zeylanica F. E. Fritsch, were also included. Molecular phylogenetic analysis based on trnG^ucc intron sequences revealed five well supported clades. Two Australian strains assigned to M. truncata var. pusilla G. S. West formed a lineage sister to M. zeylanica. This was evident from a concatenated phylogeny based on small subunit rDNA and trnG^ucc intron sequences. The isolated position of these strains was also illustrated by parallel landmark‐based geometric morphometric analysis of cell shapes. The strains NIES 783 and NIES 784 probably represent a separate species. Particular analysis, including additional strains, is needed to resolve the relationship inside this lineage. The second phylogenetic lineage, containing two strains of M. truncata var. semiradiata (Kützing) Wolle, was also different from other strains on the basis of morphometric data. We suggest recognizing this variety as a separate species, Micrasterias semiradiata L.A. Brébisson ex F. T. Kützing. The remaining three clades formed a firmly supported group of the ‘core’M. truncata recognized by both molecular markers. However, neither any morphological, morphometric, nor geographical pattern was detected among members of these three clades. This pattern could be caused by a relatively recent origin of these lineages that may represent a sympatric, truly cryptic species. Strains attributable to traditional morphologically defined variety M. truncata var. neodamensis were nested within the ‘core’M. truncata.     

Chemical composition of the Tatra Mountain lakes: Recovery from acidification

Ninety-one lakes distributed along the Tatra Mountains (most of lakes > 1 ha and 65% of lakes > 0.01 ha) were sampled and analysed for ionic and nutrient composition in September 2004 (15 years after reduction in acid deposition). Eighty-one lakes were in alpine zone and ten lakes in Norway spruce forest. The results were compared to similar lake surveys from 1994 (the beginning of water recovery from acidification) and 1984 (maximum acidification). Atmospheric deposition of SO ₄ ^2? and inorganic N decreased 57% and 35%, respectively, in this region from the late 1980s to 2000. Lake water concentrations of SO ₄ ^2? and NO ₃ ^? have decreased both by ～50% on average (to 23 and 19 μmol L^?1, respectively, in 2004) since 1984. While the decrease in SO ₄ ^2? concentrations was stable throughout 1984–2004, most of the NO ₃ ^? decrease occurred from 1994 to 2004. The declines in SO ₄ ^2? and NO ₃ ^? concentrations depended on catchment coverage with vegetation, being most rapid for SO ₄ ^2? in forest lakes and for NO ₃ ^? in rocky lakes. Concentrations of the sum of base cations (dominated by Ca²⁺) significantly decreased between 1984 and 2004, with the highest change in rocky lakes. Most of this decline occurred between 1994 and 2004. Acid neutralising capacity (ANC) did not change in the 1984–1994 period, but increased on average by 29 μmol L^?1 between 1994 and 2004, with the highest change in rocky lakes. Over the last decade, the proportion of lakes with ANC > 150 μmol L^?1 increased from 15% to 21% and that of ANC < 20 μmol L^?1 decreased from 37% to 20%. The highest decline in H⁺ and Al concentrations occurred in the most acid lakes. On a regional basis, no significant change was observed for total phosphorus, total organic nitrogen, and dissolved organic carbon (DOC) in the 1994–2004 period. However, these parameters increased in forest lakes, which exhibited an increasing trend in DOC concentrations, inversely related (P < 0.001) to their decreasing ionic strength (30% on average in 1994–2004).     

Chromosome counts and chromosome morphology of some selected species

In the years 1976–1981 we studied chromosome counts and karyotypic formulae of the following 29 species of plants from 41 localities (of these 6 from Bohemia, 32 from Moravia, 3 from Slovakia):Batrachium baudotii (Godron) F. W. Schultz,Chenopodium rubrum L.,C. polyspermum L.,C. murale L.,C. ficifolium Sm.,C. opulifolium Schrader ex DC. inLam. et DC.,C. strictum Roth [subsp.strictum, subsp.glaucophyllum (Aellen)Aellen inJust etAellen, subsp.striatiforme Uotila],Arenaria grandiflora L.,Illecebrum verticillatum L.,Spergula morisonii Boreau inDuchartre,Spergularia marginata (DC. inLam. et DC.)Kittel S. marina (L.)Griseb.,S. rubra (L.) J. etC. Presl,Silene conica L.,Sisymbrium loeselii L.,S. volgense Bieb. exE. Fourn.,S. orientale L. [subsp. orientale, subsp.macroloma (A. Pomel)Dvo?ák],S. officinale (L.)Scop.,Descurainia sophia (L.)Webb exPrantl inEngler etPrantl,Nasturtium officinale R. Br. inAiton,Barbarea arcuata (Opiz inPresl J. et C.)Reichenb.,Lunaria annua L.,Soldanella montana Willd.,S. carpatica Vierh. inUrban etGraebner,Lotus tenuis Waldst. etKit. exWilld.,L. uliginosus Schkuhr,Trigonella monspeliaca L.,Geranium sibiricum L.,Lactuca tatarica (L.)C. A. Meyer.     

Indicative value ofPediastrum and other coccal green algae in palaeoecology

Sporopollenin layers in the cell wall of coccal green algae are responsible for the resistance of cell walls to destructive processes during fossilization as well as during chemical preparation of samples for pollen-analysis. Pollen slides of samples from limnic sediments thus also contain some algal cell walls. Although some pollen-analysts tried to stress this fact, the finds of algae in pollen slides have not been paid systematic attention yet, despite their potential use for a more accurate palaeoecological reconstruction. The article summarizes the results of palaeoecological studies showing how the algae can be used in palaeoecological reconstruction of past environments. The possibility of utilizing the indicative value of algal finds is demonstrated on examples of algal communities from fossil, subrecent and recent sediments from different longitudes, latitudes, and altitudes. The identification and indicative values of species and varieties ofPediastrum are included in a special review (Komárek &; Jankovská, Biblioth. Phycol., in press). The contemporary knowledge of ecological requirements of the given taxa, completed by information from their fossil finds, makes possible the reconstruction of trophic and temperature conditions and of the purity of the water environment of the past water biotopes.     

Small‐scale variation of corticolous microalgal covers: Effects of microhabitat,season, and space

The present study focuses on temporal and microscale spatial variation of the community structure and richness of subaerial microalgae growing on the bark of European beech (Fagus sylvatica) trees in temperate deciduous forests. Subaerial phototrophic biofilms present common and conspicuous microalgal communities growing on a variety of natural and man‐made substrata. However, in comparison with other major microalgal communities such as phytoplankton and microphytobenthos, basic patterns of their spatio‐temporal variation remain largely unknown. The bark samples were collected six times each spring and autumn in a period of 3 years (2010–2013) and were cultured on agar plates, and then individual clonal strains were identified by light microscopy. A total of 55 morphotypes (considered as operational taxonomic units for subsequent analyses) were recognized, which mainly belong to the classes Trebouxiophyceae and Chlorophyceae. Interestingly, temporal variation explained the largest proportion of variation in the community structure. This variation was primarily related to seasonal fluctuations, and although the communities recorded in spring and autumn showed many overlapping taxa, a clear distinction in species composition and abundance was observed. However, the microhabitat characteristics such as bark roughness also significantly structured the microalgal community. Conversely, spatial factors such as the height of the samples above ground or distance of the samples on a trunk seemed to be of lesser importance on this scale. Thus, we concluded that the previously unrecognized seasonal changes, resulting from variation in temperature, humidity, and irradiance, as well as the non‐seasonal temporal changes, possibly resulting from local colonization or extinction of individual taxa, should be considered as one of the important factors in structuring aerial microalgal communities.     

The generalization of local staphylococcal infection in X-irradiated rabbits

Описанные опыты доказываьт, что у кроликов, облученных соответственной дозой лучей Х, возможен смертельный сепсис после заражения стафилококками в кожу—в отличие от необлученных кроликов, у которых смертельный стафилококковый сепсис удается вызвать преимущественно только интравенозной инъекцией. Сепсис развивается не сразу после инокуляции, а требует обязательно определенного латентного периода, в течение которого микроб размножается во внутренних органах животного. В принципе его патогенез не отличается от развития сепсиса у здоровых животных. Кожные некрозы, которые возникают при инокуляции стафилококков, равиваются вне зависимости от облучения.     

Photosynthesis and chlorophyll content in different areas of fodder cabbage leaves

Byla stanovena intensita fotosynthesy a obsah chlorofylu v terěících z r?znych okrsk? ?epele listu krmné kapusty odr. Coulet de Flandre. Obsah chlorofylu na jednotku plochy byl vy??í v apikální ?ásti list? ne? v ?ásti basální, vy??í ve st?edové ne? v okrajové ?ásti listu. Nebyly nalezeny podstatné rozdily v intensitě fotosynthesy ve vzorcích z r?znych ?ástí listu. Intensita fotosynthesy není p?ímo úměrná váze su?iny daného vzorku, a?koliv vàha su?iny na jednotku plochy je podstatně vy??í v apikálni ne? v basální ?ásti listové plochy.