Records and life history of Praunus flexuosus (Crustacea: Mysidacea) in Icelandic waters

Since its fust record in Icelandic waters in 1970, Praunus flexuosushas been found to be very common in the littoral zone of theAtlantic water at the south-west coast of Iceland. It seemspossible that P. flexuosus has only recently been introducedinto Icelandic waters. The life history of P. flexuosus hasbeen followed in Skerjafjord, near Reykjavik, in 1985–1986.The animals have a one-year life span. The females, some ofwhich appear to produce three broods, breed mainly during June–August.Breeding females ranged in length from 18.7 to 25.7 mm and thelargest brood was 72 eggs. The incubation time at c. 11°Cwas estimated to be 25 days. The daily growth rate of juvenileswas estimated to be 0.16 mm in July–August and 0.05–0.07mm in September–October. No growth occurred during thewinter months of October–March.     

Exploring novel non-Leloir β-glucosyltransferases from proteobacteria for modifying linear (β1->3)-linked gluco-oligosaccharide chains

Over the years several β-glucan transferases from yeast and fungi have been reported, but enzymes with such an activity from bacteria have not been characterized so far. In this work, we describe the cloning and expression of genes encoding β-glucosyltransferase domains of glycosyl hydrolase family GH17 from three species of proteobacteria: Pseudomonas aeruginosa PAO1, P. putida KT2440 and Azotobacter vinelandii ATCC BAA-1303. The encoded enzymes of these GH17 domains turned out to have a non-Leloir trans-β-glucosylation activity, as they do not use activated nucleotide sugar as donor, but transfer a glycosyl group from a β-glucan donor to a β-glucan acceptor. More particularly, the activity of the three recombinant enzymes on linear (β1?→?3)-linked gluco-oligosaccharides (Lam-Glc(4-9)) and their corresponding alditols (Lam-Glc(4-9)-ol) was studied. Detailed structural analysis, based on thin-layer chromatography, matrix-assisted laser desorption ionization time-of-flight mass spectrometry, electrospray ionization mass spectrometry, and 1D/2D (1)H and (13)C nuclear magnetic resonance data, revealed diverse product spectra. Depending on the enzyme used, besides (β1?→?3)-elongation activity, (β1?→?4)- or (β1?→?6)-elongation, or (β1?→?6)-branching activities were also detected.     

Seasonal cycle of zooplankton southwest of Iceland

Seasonal variations in biomass, abundance and species compositionof zooplankton in relation to environmental parameters and chlorophylla were studied in both the Coastal water [salinity] (S) <35.0     

Seasonal variations in abundance, development and vertical distribution of Calanus finmarchicus, C. hyperboreus and C. glacialis in the East Icelandic Current

The seasonal variation in abundance and development of Calanusfinmarchicus, Calanus hyperboreus and Calanus glacialis in relationto hydrography and chlorophyll (Chl) a was studied in the Arcticwaters of the East Icelandic Current to the north-east of Icelandfrom March 1995 to February 1996. The sampling was carried outat approximately monthly intervals on a transect of five stationsextending from 67°00'N, 13°55'W to 68°00'N, 12°40'W.In April, May and June, vertical distribution was also investigated.Spring warming of the surface waters began in May, with maximumtemperatures recorded in August (~5°C, mean for uppermost50 m). Below 75 m, temperature remained at <0°C throughoutthe year. The spring bloom of phytoplankton started in earlyMay and the highest Chl a concentrations were measured duringlate May to early June (~1 mg Chl a m^-3). Calanus finmarchicusdominated in terms of numbers (~75%), while C. hyperboreus dominatedbiomass (~76%). Calanus glacialis occurred only in low numbers(~1%) and was only a small portion of biomass (~0.7%). The abundanceof all species was low during the winter and peaked once duringsummer: C. finmarchicus in July (~16 000 ind. m^-2) and C. glacialisand C. hyperboreus in June (~370 and ~7700 ind. m^-2, respectively).The biomass of C. finmarchicus had two maxima, in April (~1.9g m^-2) and July (~1.5 g m^-2), while C. hyperboreus peaked inJune (~12.3 g m^-2). Calanus finmarchicus was estimated to spawnin early May at about the start of the spring bloom, while C.hyperboreus spawned prior to the spring bloom, in late Februaryto early March. On the basis of copepod stage distribution,C. finmarchicus was considered to have a 1-year life cycle andC. hyperboreus at least a 2-year life cycle.     

Differences and similarities in enzymes from the neopullulanase subfamily isolated from thermophilic species

Six glycoside hydrolase (GH) family 13 members, classified under the polyspecific neopullulanase subfamily GH13_20 (also termed cyclomaltodextrinase) were analysed. They originate from thermophilic bacterial strains (Anoxybacillus flavithermus, Laceyella sacchari, and Geobacillus thermoleovorans) or from environmental DNA, collected after in situ enrichments in Icelandic hot springs. The genes were isolated following the CODEHOP consensus primer strategy, utilizing the first two of the four conserved sequence regions in GH13. The typical domain structure of GH13_20, including an N-terminal domain (classified as CBM34), the catalytic module composed of the A-and B-domains, and a C-terminal domain, was found in five of the encoded enzymes (abbreviated Amy1, 89, 92, 98 and 132). These five enzymes degraded cyclomaltodextrins (CDs) and starch, while only three, Amy92 (L. sacchari), Amy98 (A. flavithermus) and Amy132 (environmental DNA), also harboured neopullulanase activity. The L. sacchari enzyme was monomeric, but with CD as the preferred substrate, which is an unusual combination. The sixth enzyme (Amy29 from environmental DNA), was composed of the ABC-domains only. Preferred substrate for Amy29 was pullulan, which was degraded to panose, and the enzyme had no detectable activity on CDs. In addition to its different activity profile and domain composition, Amy29 also displayed a different conservation (LPKF) in the fifth conserved region (MPKL) proposed to identify the subfamily. All enzymes had apparent temperature optima in the range 50–65°C, while thermostability varied, and was highest for Amy29 with a half-life of 480 min at 80°C. Calcium dependent activity or stability was monitored in four enzymes, but could not be detected for Amy29 or 98. Tightly bound calcium can, however, not be ruled out, and putative calcium ligands were conserved in Amy98.     

Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1

Thermophilic viruses represent a novel source of genetic material and enzymes with great potential for use in biotechnology. We have isolated a number of thermophilic viruses from geothermal areas in Iceland, and by combining high throughput genome sequencing and state of the art bioinformatics we have identified a number of genes with potential use in biotechnology. We have also demonstrated the existence of thermostable counterparts of previously known bacteriophage enzymes. Here we describe a thermostable RNA ligase 1 from the thermophilic bacteriophage RM378 that infects the thermophilic eubacterium Rhodothermus marinus. The RM378 RNA ligase 1 has a temperature optimum of 60–64°C and it ligates both RNA and single-stranded DNA. Its thermostability and ability to work under conditions of high temperature where nucleic acid secondary structures are removed makes it an ideal enzyme for RNA ligase-mediated rapid amplification of cDNA ends (RLM-RACE), and other RNA and DNA ligation applications.