The reaction center complex from the green sulfur bacterium Chlorobium tepidum: a structural analysis by scanning transmission electron microscopy.

The three-dimensional (3D) structure of the reaction center (RC) complex isolated from the green sulfur bacterium Chlorobium tepidum was determined from projections of negatively stained preparations by angular reconstitution. The purified complex contained the PscA, PscC, PscB, PscD subunits and the Fenna-Matthews-Olson (FMO) protein. Its mass was found to be 454 kDa by scanning transmission electron microscopy (STEM), indicating the presence of two copies of the PscA subunit, one copy of the PscB and PscD subunits, three FMO proteins and at least one copy of the PscC subunit. An additional mass peak at 183 kDa suggested that FMO trimers copurify with the RC complexes. Images of negatively stained RC complexes were recorded by STEM and aligned and classified by multivariate statistical analysis. Averages of the major classes indicated that different morphologies of the elongated particles (length=19 nm, width=8 nm) resulted from a rotation around the long axis. The 3D map reconstructed from these projections allowed visualization of the RC complex associated with one FMO trimer. A second FMO trimer could be correspondingly accommodated to yield a symmetric complex, a structure observed in a small number of side views and proposed to be the intact form of the RC complex.     

Octanoylation of the lipoyl domains of the pyruvate dehydrogenase complex in a lipoyl-deficient strain of Escherichia coli

The overexpression of a subgene encoding a hybrid lipoyl domain of the dihydrolipoamide acetyltransferase component of the pyruvate dehydrogenase complex of Escherichia coli has previously been shown to result in the formation of lipoylated and unlipoylated products. Overexpression of the same subgene in a lipoic acid biosynthesis mutant growing under lipoate-deficient conditions has now been shown to produce domains modified by octanoylation as well as unmodified domains. It was concluded from the mass of a lipoyl-binding-site peptide that the modification involves N6-octanoylation of the lysine residue (Lys244) that is normally lipoylated, and this was confirmed by the trypsin-insensitivity of the corresponding Lys244-Ala-245 bond, and the absence of modification in a mutant domain in which Lys244 is replaced by Gln. This novel protein modification raises interesting questions concerning the pathway of lipoic acid biosynthesis and the mechanism of enzyme lipoylation.     

Genduplikation durch polyploide Evolution: die Isoenzyme der Sorbitdehydrogenase bei herings- und lachsartigen Fischen (Isospondyli)

Zusammenfassung Die elektrophoretische Analyse der Isoenzyme der Sorbitdehydrogenase (SDH) bei verschiedenen Säugerspecies unter Einschluß des Menschen läßt darauf schließen, daß bei Säugern nur 1 Genlocus für dieses Enzym existiert. Auch bei Knochenfischen läßt sich in der Regel nur 1 SDH-Gen nachweisen. Eine Ausnahme bilden einige Species der Fischordnung Isospondyli. Innerhalb dieser Ordnung findet sich eine Diploid-tetraploid-Beziehung. Arten mit diploiden Charakteristika wie der Hering (Clupea harengus) besitzen 1 SDH-locus, an dem 3 Allele zu beobachten waren. Bei einigen phylogenetisch tetraploiden lachsartigen Fischen läßt sich eine Duplikation des SDH-Gens nachweisen. Während bei der Bachforelle (Salmo trutta) die nach der Tetraploidisierung zunächst identischen loci sich divergent entwickelt haben und jetzt diploidisiert sind, zeigen Regenbogenforelle (Salmo irideus) und Blaufelchen (Coregonus lavaretus) tetrasome Phänotypen der SDH. Beim Blaufelchen findet sich ein Überschuß an Heterozygoten, der auf eine meiotische Vorzugspaarung der Chromosomen mit identischen Allelen schließen läßt. Diese Befunde geben Einblick in den Mechanismus der Diploidisierung, der in der Evolution der höheren Wirbeltiere eine wesentliche Rolle gespielt haben dürfte.

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Sorbitol dehydrogenase isozymes in clupeoid fish: a further example of gene duplication through polyploid evolution

Summary Electrophoretic analysis of the sorbitol dehydrogenase isozymes (SDH) in various mammalian species including man revealed the existence of only 1 gene locus for this enzyme. As a rule, the same is true for Teleostean fishes. Some species of the fish order Isospondyli, however, represent an exception. Within this order, a diploid-tetraploid relationship exists. Species exhibiting diploid characteristics as the herring (Clupea harengus), are endowed with a single SDH gene locus at which 3 different alleles were observed. In some Salmonoid fish having passed through tetraploid evolution, a duplication of the SDH gene can be demonstrated. While in Salmo trutta the duplicated genes evolved divergently and became diploidized, in Salmo irideus and Coregonus lavaretus tetrasomic phenotypes occur. In Coregonus, the predominance of heterozygotes is to be interpreted as the consequence of preferential pairing of meiotic chromosomes endowed with identical alleles. These findings give some insight in the diploidization mechanism which may have played an important role during evolution of higher vertebrates.

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Mit Unterstützung durch die Deutsche Forschungsgemeinschaft.     

High-level secretion of biologically active aprotinin from the yeastPichia pastoris

Summary A synthetic gene encoding aprotinin (bovine pancreatic trypsin, inhibitor) was fused to theSaccharomyces cerevisiae prepro alpha mating factor leader sequence at the dibasic amino acid processing site.Pichia pastoris strains were developed to'express one or multiple copies of a methanol-inducible expression cassette containing the gene fusion.P. pastoris containing a single copy of the vector secreed approximately 150 mg/l of immunoreactive protein. A construct bearing five copies of the expression cassette secreted 930 mg/l of aprotinin. The purified aprotinin molecule was equipoten with the native molecule in a trypsin inhibition assay. Protein sequence analysis showed that the alpha factor-aprotinin fusion was not processed at the basic amino acid residues Lys-Arg. Instead, recombinant aprotinin had additional N-terminal amino acids derived from prepro alpha factor. The N-terminal extension was variably 11 or 4 amino acids. Inclusion of the spacer DNA sequence encoding Glu and Ala between aprotinin and the Lys-Arg processing site led to the secretion of a biologically active aprotinin containing only a Glu-Ala N-terminal extension.     

Trisubstituted and tetrasubstituted pyrazolines as a novel class of cell-growth inhibitors in tumor cells with wild type p53

Derivatives with scaffolds of 1,3,5-tri-substituted pyrazoline and 1,3,4,5-tetra-substituted pyrazoline were synthesized and tested for their inhibitory effects versus the p53^+/+ HCT116 and p53^?/? H1299 human tumor cell lines. Several compounds were active against the two cell lines displaying IC₅₀ values in the low micromolar range with a clearly more pronounced effect on the p53^+/+ HCT116 cells. The compound class shows excellent developability due to the modular synthesis, allowing independent optimization of all three to four key substituents to improve the properties of the molecules.     

Dogfish M4 lactate dehydrogenase: reversible inactivation by pyridoxal 5''-phosphate and complete protection in complexes that mimic the active ternary complex.

Dogfish M4 lactate dehydrogenase, like the corresponding pig enzyme, is inactivated by pyridoxal 5'-phosphate through modification of a single essential lysine residue. The activity is completely protected in the complexes E-NAD+-oxalate, E-NADH-oxamate and E-(NAD+-pyruvate adduct), but only partially protected in E-NAD+, E-NADH, E-NAD+-oxamate and E-NADH-oxalate.     

Effect of cardiogenic gas mixing on arterial O2 and CO2 tensions during breath holding

To examine the effect of cardiogenic gas mixing on gas exchange we measured arterial tension of O2 (PaO2) and arterial tension of CO2 (PaCO2) during 3- to 5-min breath holds (BH) before and after infusing 50 ml of saline into the pericardial space (PCF) of seven anesthetized, paralyzed, mechanically ventilated dogs. During BH the ventilator was disconnected and a bias flow of 50% O2 at 4-5 l/min was delivered through the side ports of a small catheter whose tip was positioned 1 cm cephalad of the carina. Paired runs, alternately with and without PCF, were performed in triplicate in each dog. Initial PaO2 was similar for control runs [81 +/- 3 mmHg (SE)] and PCF runs (78 +/- 3 mmHg; P greater than 0.1). After 3-min BH, PaO2 in PCF runs (33 +/- 3 mmHg) was less than that in control runs (58 +/- 4 mmHg) (P less than 0.001). In contrast, the pattern of PaCO2 during BH did not differ with PCF. After 3-min BH, PaCO2 was 49 +/- 3 mmHg with PCF and 49 +/- 2 mmHg in the control runs (P greater than 0.7). In two dogs, repeated 50-ml reductions in lung volume, produced by rib cage compression, did not alter the time course of PaO2 during BH. Although cardiac output decreased slightly with PCF, hemodynamic changes due to PCF were unlikely to account for the observed fall in PaO2. Our results indicate a substantial effect of cardiogenic gas mixing on O2 uptake when tracheal gas is O2 enriched during breath holding.(ABSTRACT TRUNCATED AT 250 WORDS)