Regression models for infant mortality data in Norwegian siblings, using a compound Poisson frailty distribution with random scale

The power variance function distributions, which include the gamma and compound Poisson (CP) distributions among others, are commonly used in frailty models for family data. In a previous paper, we presented a frailty model constructed by randomizing the scale parameter in a CP distribution. When combined with a parametric baseline hazard, this yields a model with heterogeneity on both the individual and the family level and a subgroup with zero frailty, corresponding to people not experiencing the event. In this paper, we discuss covariates in the model. Depending on where the covariates are inserted in the model, one may have proportional hazards at the individual level, the family level, and a larger group level (for covariates shared by many families, e.g. ethnic groups) or get accelerated failure times. Each of these alternatives gives a specific interpretation of the covariate effects. An application to data infant mortality in siblings from the Medical Birth Registry of Norway is included. We compare the results for some of the different covariate modeling options.     

Maternally derived testosterone and 17beta-estradiol in the eggs of Arctic-breeding glaucous gulls in relation to persistent organic pollutants

It is largely unknown if and how persistent organic pollutants (POPs) affect the transfer of maternal hormones to eggs. This occurs despite an increasing number of studies relating environmental conditions experienced by female birds at the time of egg formation to maternal hormonal effects. Here we report the concentrations of maternal testosterone, 17beta-estradiol and major classes of POPs (organochlorines, brominated flame retardants and metabolically-derived products) in the yolk of unincubated, third-laid eggs of the glaucous gull (Larus hyperboreus), a top-predator in the Arctic marine environment. Controlled for seasonal and local variation, positive correlations were found between the concentrations of certain POPs and testosterone. Contaminant-related changes in the relative concentrations of testosterone and 17beta-estradiol were also observed. In addition, yolk steroid concentrations were associated with contaminant profiles describing the proportions of different POPs present in the yolk. Eggs from nests in which two sibling eggs hatched or failed to hatch differed in POP profiles and in the relative concentrations of testosterone and 17beta-estradiol. Although the results of this correlative study need to be interpreted with caution, they suggest that contaminant-related changes in yolk steroids may occur, possibly affecting offspring performance over and above toxic effects brought about by POPs in eggs.     

Breeding biology of ostriches (Struthio camelus) in the Serengeti ecosystem, Tanzania

Ostrich breeding behaviour in the Serengeti ecosystem, Tanzania was investigated for differences in laying dates between low altitude western area (WA) and high altitude eastern area (EA) populations. Ostriches in WA laid eggs significantly earlier than in EA. The differences could be attributed to topography and rainfall pattern. Reliable rains in lower altitudes ensure availability of food that in turn influences the whole process of the reproductive cycle. Clutches were contributed by several females with a nest having up to 38 eggs. We also compared the frequency of observation of predators, ostriches, nests, 'singletons' (single eggs laid randomly) and broods between the two areas. There was no significant difference between WA and EA in 1) ostrich/nest ratio, indicating similar breeding densities; 2) ostrich/predator and predator/nest ratios, indicating that predation pressure was equally high; 3) nest/singleton and predator/singleton ratios, indicating that loss of nests did not vary between areas. However, there were significantly more predators, nests and ostriches compared to broods in EA than in WA, indicating a significantly lower reproductive success in EA. Using metapopulation terminology, ostriches in EA could be regarded as a 'sink' population and those in WA as a 'source' population, but investigations over longer time-periods are needed to further resolve if this is the case.     

The invertebrate fauna of High Arctic seabird nests: the microarthropod community inhabiting nests on Spitsbergen,Svalbard

The invertebrate fauna of the nests of three seabird species, black-legged kittiwakes (Rissa tridactyla), common eider (Somateria mollissima) and glaucous gull (Larus hyperboreus), were sampled in Kongsfjorden, Spitsbergen, Svalbard. The invertebrate community was species poor, consisting predominantly of the flea, Mioctenopsylla arctica arctica (Insecta: Siphonaptera), but with six species of oribatid mite (Acari: Oribatida), Diapterobates notatus, Oribatula tibialis, Ameronothrus lineatus, Hermannia reticulata, Trichoribates trimaculatus and Ceratoppia bipilis, plus an occasional mesostigmatid mite. No Collembola or ticks (Acari: Ixodidae) were observed. With the exception of M. arctica arctica, the fauna of seabird nests consisted of opportunistic microarthropod species rather than specialised nest-dwelling or bird parasitic species. Species diversity of soil oribatid mites was greater in nests of the common eider than compared to nests of the black-legged kittiwake, which may be related to the ground nesting behaviour of the common eiders. No rare or unusual microarthropod species for Svalbard were found in the seabird nests. The contentions that nests may facilitate microarthropod colonisation of High Arctic regions via bird phoresy by providing a high-quality habitat at the point of arrival, or that there might be a specialised microarthropod fauna exploiting this habitat, were not supported in this study. These are amongst the first data on the microarthropod community of seabird nests in the High Arctic.     

Genetic enrichment of the arctic clonal plant Saxifraga cernua at its southern periphery via the alpine sexual Saxifraga sibirica

Isolation of populations at the margins of a species range may lead to decreasing genetic diversity via genetic drift and inbreeding. Hybridization between peripheral populations of two species can, however, counteract genetic impoverishment. The mainly clonal, polyploid plant Saxifraga cernua has a wide arctic distribution but also extends southwards into alpine sites. In the Ural Mountains, its peripheral distribution overlaps with that of its sexually reproducing, diploid relative Saxifraga sibirica, and fertile polyploids of more or less intermediate appearance are found in this overlap zone. We used amplified fragment length polymorphism (AFLP) analysis to address the potential impact of interspecific gene flow on genetic diversity in the peripheral populations. A total of 149 plants from 17 populations along a 1650 km south-north gradient were analysed for 253 markers. The results suggest that three Middle Ural populations containing fertile and morphologically more or less intermediate plants have been affected by hybridization. All of these plants formed a strongly supported (100%) group with S. cernua in a neighbour-joining tree, but their AFLP phenotypes assigned either to S. cernua or to artificial (simulated) F(1) hybrids between S. cernua and S. sibirica in multilocus assignment tests. The three populations were highly diverse with virtually every plant representing a distinct AFLP phenotype, providing additional evidence for formation of later-generation hybrids and/or backcrossing to S. cernua. In contrast, other peripheral populations of S. cernua were typically monoclonal, suggesting that hybridization with S. sibirica can increase genetic diversity in S. cernua at its southern periphery.     

Identification of bacterial target proteins for the salicylidene acylhydrazide class of virulence-blocking compounds

A class of anti-virulence compounds, the salicylidene acylhydrazides, has been widely reported to block the function of the type three secretion system of several Gram-negative pathogens by a previously unknown mechanism. In this work we provide the first identification of bacterial proteins that are targeted by this group of compounds. We provide evidence that their mode of action is likely to result from a synergistic effect arising from a perturbation of the function of several conserved proteins. We also examine the contribution of selected target proteins to the pathogenicity of Yersinia pseudotuberculosis and to expression of virulence genes in Escherichia coli O157.     

Egg Discrimination in an Open Nesting Passerine Under Dim Light Conditions

Many hosts of avian brood parasites such as the common cuckoo (Cuculus canorus) show refined egg discrimination behaviour. Egg recognition in most open‐nesting hosts seems to be based entirely on differences in colour. However, hole‐ and dome‐nesting hosts may rely largely on luminance contrasts. Here, we studied egg rejection behaviour in nightingales (Luscinia megarhynchos), an open‐nesting species that nests in deeply shadowed positions and lays very specific dark olive‐green eggs. Although being theoretically suitable as hosts of the cuckoo, nightingales are very rarely parasitized and no cuckoo egg morph mimicking nightingale eggs is known. Thus, we predicted high rejection rate of foreign eggs, but because of the dim nesting environments, luminance contrasts would be an important cue in egg rejection decisions, similar to cavity‐ or dome‐nesting species. We experimentally parasitized nightingale nests with two groups of model egg types: ‘bright eggs’ and ‘dark eggs’. Within each group, one of the egg types was an effective match while the other type was a poor colour match (whitish vs. pale blue and olive‐green vs. black).We used a discrimination visual model to quantify host‐model egg similarity and compared egg rejection predicted by the model with the observed rejection pattern. Consistent with a scenario of largely luminance‐based egg recognition, blue and white eggs, which had larger achromatic mismatching, were rejected at a higher relative rate than the better achromatic matching black and green eggs. Nightingales showed strong aggression to a cuckoo dummy, suggesting that they were involved in coevolutionary interactions with the cuckoo in the past. However, because of the highly distinct appearance of nightingale eggs relative to the other sympatrically breeding passerines, and the largely luminance‐based egg recognition, this arms race was likely terminated at an early stage.     

Escherichia coli SeqA Structures Relocalize Abruptly upon Termination of Origin Sequestration during Multifork DNA Replication

The Escherichia coli SeqA protein forms complexes with new, hemimethylated DNA behind replication forks and is important for successful replication during rapid growth. Here, E. coli cells with two simultaneously replicating chromosomes (multifork DNA replication) and YFP tagged SeqA protein was studied. Fluorescence microscopy showed that in the beginning of the cell cycle cells contained a single focus at midcell. The focus was found to remain relatively immobile at midcell for a period of time equivalent to the duration of origin sequestration. Then, two abrupt relocalization events occurred within 2–6 minutes and resulted in SeqA foci localized at each of the cell’s quarter positions. Imaging of cells containing an additional fluorescent tag in the origin region showed that SeqA colocalizes with the origin region during sequestration. This indicates that the newly replicated DNA of first one chromosome, and then the other, is moved from midcell to the quarter positions. At the same time, origins are released from sequestration. Our results illustrate that newly replicated sister DNA is segregated pairwise to the new locations. This mode of segregation is in principle different from that of slowly growing bacteria where the newly replicated sister DNA is partitioned to separate cell halves and the decatenation of sisters a prerequisite for, and possibly a mechanistic part of, segregation.