Molecular Systematics of the Order Crocodilia

Analyses of proteins, lipids and nucleic acids have been extremelyuseful for assessing the level of molecular divergence in theCrocodilia and for inferring the relationships of crocodiliansto each other and to other vertebrates. A large body of traditional(morphological and paleontological), as well as recent non-traditional(cytogenetic and molecular) evidence concurs that birds arethe closest living sister group to the Crocodilia. Relationshipswithin the order have been much more difficult to resolve usingtraditional analyses due to the problems of convergence/parallelismand general morphological conservatism. Studies of protein divergence,while in agreement with traditional interpretations of affinitiesbetween the alligators and caimans, suggest that the true andfalse gharials are more closely related to each other than toother crocodilians and that the true crocodiles are all veryclose relatives that may have diverged recently. Preliminaryanalyses from an ongoing study of restriction endonuclease analysisof crocodilian mitochondrial and ribosomal DNAs corroborateboth of these observations, suggesting that the molecular approachwill be very valuable for resolving crocodilian phylogeny.     

Thermal de‐acclimation: how permanent are leaf phenotypes when cold‐acclimated plants experience warming?

We quantified a broad range of Arabidopsis thaliana (Col‐0) leaf phenotypes for initially warm‐grown (25/20 °C day/night) plants that were exposed to cold (5 °C) for periods of a few hours to 45 d before being transferred back to the warm, where leaves were allowed to mature. This allowed us to address the following questions: (1) For how long do warm‐grown plants have to experience cold before developing leaves become irreversibly cold acclimated? (2) To what extent is the de‐acclimation process associated with changes in leaf anatomy and physiology? We show that leaves that experience cold for extended periods during early development exhibit little plasticity in either photosynthesis or respiration, and they do not revert to a warm‐associated carbohydrate profile. The eventual expansion rate in the warm was inversely related to the duration of previous cold treatment. Moreover, cold exposure of immature/developing leaves for as little as 5 d resulted in irreversible changes in the morphology of leaves that subsequently matured in the warm, with 15 d cold being sufficient for a permanent alteration of leaf anatomy. Collectively, these results highlight the impact of transitory cold during early leaf development in determining the eventual phenotype of leaves that mature in the warm.     

Loss of forb diversity in relation to nitrogen deposition in the UK: regional trends and potential controls

In this study we investigate the impact of nitrogen (N) deposition on the diversity of three different vegetation functional groups – forbs, grasses and mosses – using a field survey of acid grasslands across Great Britain. Our aim is to identify the vegetation types that are most vulnerable to enhanced N deposition, and to shed light on the mechanisms that may be driving N‐initiated species changes in the UK. Sixty‐eight randomly selected grasslands belonging to the UK National Vegetation Classification group U4 (Festuca ovina–Agrostis capillaris–Galium saxatile grassland) were studied along a gradient of atmospheric N deposition ranging from 6 to 36 kg N ha^?1 yr^?1. At each site, vegetation was surveyed and samples were taken from the topsoil and subsoil. Aboveground plant material was collected from three species: a forb, grass and moss. Both the species richness and cover of forbs declined strongly with increasing N deposition, from greater than eight species/20% cover per m² quadrat at low levels of N to fewer than two species/5% cover at the highest N deposition levels. Grasses showed a weak but significant decline in species richness, and a trend toward increasing cover with increasing N input. Mosses showed no trends in either species richness or cover. Most of the decline in plant species richness could be accounted for by the level of ammonium deposition. Soil KCl‐extractable ammonium concentration showed a significant positive correlation with N input, but there was no relationship between N deposition and extractable nitrate. In the soil O/A horizon, there was no relationship between N deposition and %N, and only a very weak positive relationship between the level of N deposition and the C : N ratio. Finally, in the vegetation, there was no relationship between N deposition and either shoot tissue N concentration or N : P ratio for any of the three reference species. Combining our regional survey with the results of published N‐addition experiments provides compelling evidence that there has been a significant decline in the species richness and cover of forbs across Great Britain, and that the primary cause is competition due to an increase in the cover of grasses in response to enhanced deposition of reactive N, primarily NH₄⁺.     

Antimicrobial activity of silymarin mediated zinc oxide and hydroxy apatite nanoparticles against oral pathogens

The nanoparticles such as hydroxyapatite, zinc oxide, titanium dioxide and zirconium nanoparticles have application in dentistry. Therefore, it is of interest to document the antimicrobial activity of silymarin mediated zinc oxide and hydroxy apatite nanoparticles against oral pathogens. Hence, we synthesized hydroxyapatie and zinc oxide nanoparticles with silymarin and characterized by UV-visible spectrophotometer. Data shows that silymarin mediated HAP and ZnO nanoparticles have antimicrobial activity against oral pathogens such as Pseudomonas sp, Staphylococcus aureus, Streptococcus mutans, Enterococcus faecalis and Candida albicans.     

Modulation of respiratory metabolism in response to nutrient changes along a soil chronosequence

Laboratory studies indicate that plant respiratory efficiency may decrease in response to low nutrient availability due to increased partitioning of electrons to the energy‐wasteful alternative oxidase (AOX); however, field confirmation of this hypothesis is lacking. We therefore investigated plant respiratory changes associated with succession and retrogression in soils aged from 10 to 120 000 years along the Franz Josef soil chronosequence, New Zealand. Respiration rates and electron partitioning were determined based on oxygen isotopic fractionation. Leaf structural traits, foliar nutrient status, carbohydrates and species composition were measured as explanatory variables. Although soil nutrient levels and species composition varied by site along the chronosequence, foliar respiration across all sites and species corresponded strongly with leaf nitrogen concentration (r² = 0.8). In contrast, electron partitioning declined with increasing nitrogen/phosphorus (r² = 0.23) and AOX activity correlated with phosphorus (r² = 0.64). Independently, total respiration was further associated with foliar Cu, possibly linked to its effect on AOX. Independent control of AOX and cytochrome pathway activities is also discussed. These responses of plant terminal respiratory oxidases – and therefore respiratory carbon efficiency – to multiple nutrient deficiencies demonstrate that modulation of respiratory metabolism may play an important role in plant responses to nutrient gradients.     

A new Sphagesaurus (Mesoeucrocodylia: Notosuchia) from the Upper Cretaceous of Monte Alto City (Bauru Group,Brazil), and a revision of the Sphagesauridae

Oxygen consumption and ammonia excretion rates were assessed for Terebratulina retusa (L.) held under 3 different regimes of temperature and food availability. These were: 5.6?C, no food (cold, starved); 5.8?C, food present (cold, fed) and 10.7?C food present (warm, fed), which simulated winter conditions, summer conditions and an intermediate treatment. Regressions of oxygen consumption on ash‐free dry weight (AFDW) had slopes which were not significantly different from each other and ranged from 0.953 to 0.999. A common slope of 0.976 was calculated and intercepts based on the common slope used to compare oxygen consumption in each treatment. The rise from cold, starved conditions to warm, fed was 24.5 per cent and this was significant (P < 0.05). Other differences were not significant (P > 0.05) but the cold, fed result was 12.6 per cent higher than cold, starved. Therefore feeding and temperature probably account for equivalent proportions of the rise in metabolism from winter to summer. Ammonia production data were much more variable. Excretion rates of a 50 mg AFDW individual (in ng‐at NH₃‐N.h^‐1) were as follows: cold, starved: 30.2 cold, fed: 7.1; and warm, fed: 22.9. Oxygen to nitrogen (O:N) ratios reflected these results. Mean O:N ratios were: cold, starved: 8.0; cold, fed: 42.4; warm, fed: 16.3. This shows that the simulated winter group relied heavily on protein to fuel their metabolism, the simulated summer group were less dependent on protein and the intermediate group probably used lipids and carbohydrates to fuel metabolic demands. This possibly reflected a trade off between food supply and increased metabolism from treatment to treatment, demonstrating a flexibility which could have been a contributing factor in the ecological tolerance and geological longevity of some brachiopods.