Species Richness and Abundance of Cerambycidae (Coleoptera) in Huatulco,Oaxaca, Mexico; Relationships with Phenological Changes in the Tropical Dry Forest

Cerambycidae have an important ecological role in initiating the degradation process of dead wood, but few studies have evaluated Cerambycidae community attributes in relation to ecosystem phenology. We surveyed the cerambicid fauna of the tropical dry forest in Huatulco, Oaxaca, Mexico, and explored the relationship of Cerambycidae species richness and abundance with phenological changes in vegetation. We applied three collecting methods of light traps, direct collection, and Malaise traps to survey Cerambycidae throughout 2005. To determine seasonal variations, we collected samples in the dry season month of February in the rainy season of May–July and August–September, and in the transition months of October and November through. We collected and identified 145 species, 88 genera, 37 tribes, and four subfamilies. The subfamily with the highest number of species was Cerambycinae (100 species), and the tribe with the highest number of genera and species was Elaphidiini with 13 genera and 33 species. The ICE non-parametric estimator determined an overall expected richness of 373 species, while the overall Shannon Diversity Index was 4.1. Both species richness and abundance varied seasonally, with the highest values recorded in the rainy season and the lowest in the dry season. Overall species abundance was not significantly correlated to monthly rainfall or EVI neither, only for “direct collecting” the EVI vs Richness and EVI vs Shannon Diversity Index were significantly correlated. We propose that the seemingly contradictory relationships between seasonal richness patterns of Cerambycidae and the greening/senescence of vegetation (EVI) may be explained by the seasonal availability of dead organic matter, flowers, or leafy vegetation that may be synchronized with the behavior of different cerambycid species.     

Sex-dependent effects of nutrition on telomere dynamics in zebra finches (Taeniopygia guttata)

At a cellular level, oxidative stress is known to increase telomere attrition, and hence cellular senescence and risk of disease. It has been proposed that dietary micronutrients play an important role in telomere protection due to their antioxidant properties. We experimentally manipulated dietary micronutrients during early life in zebra finches (Taeniopygia guttata). We found no effects of micronutrient intake on telomere loss during chick growth. However, females given a diet high in micronutrients during sexual maturation showed reduced telomere loss; there was no such effect in males. These results suggest that micronutrients may influence rates of cellular senescence, but differences in micronutrient requirement and allocation strategies, probably linked to the development of sexual coloration, may underlie sex differences in response.     

Exploring the in situ accessibility of small subunit ribosomal RNA of members of the domains Bacteria and Eukarya to oligonucleotide probes

The principle that the small subunit ribosomal RNA (ssu rRNA) is generally accessible to oligonucleotide probes designed to have high thermodynamic affinity was tested with Stenotrophomonas maltophilia, Rhodobacter sphaeroides, Bacillus subtilis, and Saccharomyces cerevisiae. Fluorescein-labeled probes, designed to have ΔG_overall° = −14 ± 1 and to avoid the potential of nucleobase-specific quenching, were used to target 20 randomly selected sites in each organism. A site was considered accessible if probe brightness was at least 10 times the background signal. With 30-h hybridizations, 71 out of 80 target sites passed the accessibility criterion. Three additional sites were demonstrated to be accessible with either longer hybridizations, which seemed to have a negative effect on some probes, or the addition of formamide to the hybridization buffer. The remaining 6 sites were demonstrated to be accessible by changing the fluorophore to Cy5, slightly modifying probe lengths, using dual-labeled fluorescein probes, or a combination of these approaches. Probe elongations were only needed in 4 probes, indicating a 95% success in correctly predicting ΔG_overall°, the key parameter for the design of high affinity probes. In addition, 94% of the fluorescein labeled probes yielded bright signals, demonstrating that nucleobase-specific quenching of fluorescein is an important factor affecting probe brightness that can be predicted during probe design. Overall, the results support the principle that with a rational design of probes, it is possible to make most target sites in the ssu rRNA accessible.