Vertical water column resource partitioning by a ciliated protozoan population under stratified conditions in the northern Adriatic

The vertical distribution of the ciliated protozoan stock, potentialprey and potential predators were repeatedly sampled over twodiurnal cycles at an eutrophic site off the Po River delta duringsummer when the water column was strongly stratified. A subsurfaceciliated protozoan maximum (SCPM) was associated with a subsurfacenanoplankton chlorophyll maximum (SCM), which was located belowthe pycnocline at the nutricline. A subsurface oxygen maximumindicated that the SCM resulted from in situ growth. The associatedSCPM appeared to result from the interaction of two primaryfactors: (i) the availability of a high prey biomass (i.e. nanoplankton)and (ii) low grazing pressure from potential predators (i.e.macrozooplankton).     

Endothelial intercellular cell adhesion molecule 1 contributes to cell aggregate formation in CHO cells cultured in serum-free media

Chinese hamster ovary (CHO) cells have been adapted to grow in serum-free media and in suspension culture to facilitate manufacturing needs. Some CHO cell lines, however, tend to form cell aggregates while being cultured in suspension. This can result in reduced viability and capacity for single cell cloning (SCC) via limiting dilution, and process steps to mitigate cell aggregate formation, for example, addition of anti-cell-aggregation agents. In this study, we have identified endothelial intercellular cell adhesion molecule 1 (ICAM-1) as a key protein promoting cell aggregate formation in a production competent CHO cell line, which is prone to cell aggregate formation. Knocking out (KO) the ICAM-1 gene significantly decreased cell aggregate formation in the culture media without anti-cell-aggregation reagent. This trait can simplify the process of transfection, selection, automated clone isolation, and so on. Evaluation in standard cell line development of ICAM-1 KO and wild-type CHO hosts did not reveal any noticeable impacts on titer or product quality. Furthermore, analysis of a derived nonaggregating cell line showed significant reductions in expression of cell adhesion proteins. Overall, our data suggest that deletion of ICAM-1 and perhaps other cell adhesion proteins can reduce cell aggregate formation and improve clonality assurance during SCC.     

Microplankton diversity indices as indicators of eutrophication in the northern adriatic sea

Phytoplankton community diversity indices are used to characterize the effects of eutrophication in the Northern Adriatic Sea. A derived Shannon diversity frequency spectrum provided a single biological quantification which allowed an interpretation of temporal and regional differences and which can also be used to evaluate future changes in species diversity. The data base comprised a 4+ year time series involving 300 taxa.     

Microclimate is a strong predictor of the native and invasive plant-associated soil microbiome on San Cristóbal Island,Galápagos archipelago

Understanding the drivers that affect soil bacterial and fungal communities is essential to understanding and mitigating the impacts of human activity on vulnerable ecosystems like those on the Galápagos Islands. The volcanic slopes of these Islands lead to steep elevation gradients that generate distinct microclimates across small spatial scales. Although much is known about the impacts of invasive plant species on the above-ground biodiversity of the Galápagos Islands, little is known about their resident soil microbial communities and the factors shaping them. Here, we investigate the bacterial and fungal soil communities associated with invasive and native plant species across three distinct microclimates on San Cristóbal Island (arid, transition zone and humid). At each site, we collected soil at three depths (rhizosphere, 5 cm and 15 cm) from multiple plants. Sampling location was the strongest driver of both bacterial and fungal communities, explaining 73% and 43% of variation in the bacterial and fungal community structure, respectively, with additional minor but significant impacts from soil depth and plant type (invasive vs. native). This study highlights the continued need to explore microbial communities across diverse environments and demonstrates how both abiotic and biotic factors impact soil microbial communities in the Galápagos archipelago.