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Phylogenetic inference under the pure drift model 总被引:1,自引:1,他引:0
When pairwise genetic distances are used for phylogenetic reconstruction,
it is usually assumed that the genetic distance between two taxa contains
information about the time after the two taxa diverged. As a result, upon
an appropriate transformation if necessary, the distance usually can be
fitted to a linear model such that it is expressed as the sum of lengths of
all branches that connect the two taxa in a given phylogeny. This kind of
distance is referred to as "additive distance." For a phylogenetic tree
exclusively driven by random genetic drift, genetic distances related to
coancestry coefficients (theta XY) between any two taxa are more suitable.
However, these distances are fundamentally different from the additive
distance in that coancestry does not contain any information about the time
after two taxa split from a common ancestral population; instead, it
reflects the time before the two taxa diverged. In other words, the
magnitude of theta XY provides information about how long the two taxa
share the same evolutionary pathways. The fundamental difference between
the two kinds of distances has led to a different algorithm of evaluating
phylogenetic trees when theta XY and related distance measures are used.
Here we present the new algorithm using the ordinary- least-squares
approach but fitting to a different linear model. This treatment allows
genetic variation within a taxon to be included in the model. Monte Carlo
simulation for a rooted phylogeny of four taxa has verified the efficacy
and consistency of the new method. Application of the method to human
population was demonstrated.
相似文献
83.
Previous investigations on the monkey kidney COS cell line demonstrated the
weak expression of fucosylated cell surface antigens and presence of
endogenous fucosyltransferase activities in cell extracts. RT-PCR analyses
have now revealed expression of five homologs of human fucosyltransferase
genes, FUT1, FUT4, FUT5, FUT7, and FUT8, in COS cell mRNA. The enzyme in
COS cell extracts acting on unsialylated Type 2 structures is closely
similar in its properties to the alpha1,3- fucosyltransferase encoded by
human FUT4 gene and does not resemble the product of the FUT5 gene.
Although FUT1 is expressed in the COS cell mRNA, it has not been possible
to demonstrate alpha1,2- fucosyltransferase activity in cell extracts but
the presence of Le(y) and blood-group A antigenic determinants on the cell
surface imply the formation of H-precursor structures at some stage. The
most strongly expressed fucosyltransferase in the COS cells is the
alpha1,6-enzyme transferring fucose to the innermost N -acetylglucosamine
unit in N - glycan chains; this enzyme is similar in its properties to the
product of the human FUT8 gene. The enzymes resembling the human FUT4 and
FUT8 gene products both had pH optima of 7.0 and were resistant to 10 mM
NEM. The incorporation of fucose into asialo-fetuin was optimal at 5.5 and
was inhibited by 10 mM NEM. This result initially suggested the presence of
a third fucosyltransferase expressed in the COS cells but we have now shown
that triantennary N- glycans with terminal nonreducing galactose units,
similar to those present in asialo-fetuin, are modified by a weak
endogenous beta-galactosidase in the COS cell extracts and thereby rendered
suitable substrates for the alpha1,6- fucosyltransferase.
相似文献
84.
Taxol from fungal endophytes and the issue of biodiversity 总被引:7,自引:0,他引:7
GA Strobel WM Hess E. Ford RS Sidhu X Yang 《Journal of industrial microbiology & biotechnology》1996,17(5-6):417-423
Fungi represent one of the most understudied and diverse group of organisms. Commonly, these organisms make associations with higher life forms and may proceed to biochemically mimic the host organism. An excellent example of this is the anticancer drug, taxol, which had been previously supposed to occur only in the plant genusTaxus (yew). However, taxol has been reported in a novel endophytic fungus—Taxomyces andreanae, but also has been demonstrated to occur in a number of unrelated fungal endophytes includingPestalotia, Pestalotiopsis, Fusarium, Alternaria, Pithomyces, Monochaetia and others. Thus, this report presents information on the presence of taxol among disparate fungal genera, and uses these observations as an additional argument to support efforts to study fungal endophytes and preserve their associated host plants. 相似文献
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Although the reproductive ecology of marine turtles has beenthe subject of numerous long-range studies, the reproductivephysiology of these unique animals is little known. Recently,however, preliminary anatomical and endocrinological studieshave provided a good basis on which to begin to attempt to explainseveral of their unusual biological systems. New findings relatedto the anatomy of Chelonia mydas and Lepidochelys olivacea arepresented. The female, although having a very massive pair ofsimultaneously functioning ovaries, appears in most ways verysimilar to other chelonians. Corpora hemorrhagica, corpora luteaand corpora atretica from active ovaries are briefly described.Ovulation coincides with a luteinizing hormone and progesteronesurge. Sperm are probably stored for the season after a singlemating period which appears to occur prior to the first ovulation.Males may also cycle and mating as well as nesting are seenas more or less seasonal. The seasonality could be controlledin part by melatonin or other endocrines from the sea turtle'smassive pineal complex. A hypothetical model for reproductionis presented in hopes of stimulating interest in physiologicalapproaches to the study of marine turtle reproduction. 相似文献
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