Identification of the three subtypes and the prognostic characteristics of stomach adenocarcinoma: analysis of the hypoxia-related long non-coding RNAs

Functional & Integrative Genomics - Stomach adenocarcinoma (STAD) is one of the most commonly diagnosed cancers. This study analyzed the subtypes and characteristics of STAD subtypes by...     

Mechanical analysis of deep tissue injury during sitting in patients with spinal cord injury via parametric finite element model

Biomechanics and Modeling in Mechanobiology - Spinal cord injury patients are prone to develop deep tissue injury because of long-term mechanical load. However, there is a lack of statistical...     

不同抗性泡核桃对褐斑病病原菌侵染的生理生化响应北大核心CSCD

以抗病和感病泡核桃无性系为实验材料,人工接种褐斑病病原菌后测定不同时期叶片中保护酶活性、总酚、类黄酮、叶绿素含量等相关生理生化指标,探讨不同抗性泡核桃响应褐斑病病原菌侵染的生理生化差异。结果表明:(1)接种病原菌后,感病无性系64叶片带菌率随着侵染时间的增加而升高,且显著高于抗病无性系199(P<0.05)。(2)抗病无性系199和感病无性系64叶片的SOD、POD、CAT、APX和PPO活性随着侵染时间均呈现先升高后降低的变化趋势,其中SOD、POD和APX活性均在16 d时达到最大值;与较感病无性系相比,接种后抗病无性系的POD和APX活性较强;在接种前期(1~16 d),感病无性系PPO活性高于抗病无性系,后期(16~34 d)CAT活性也较抗病无性系高。(3)抗病无性系叶片叶绿素含量始终高于感病无性系;抗病无性系MDA含量在接种后无明显变化,而感病无性系先增加后降低,其细胞膜脂过氧化较重。(4)两个无性系叶片可溶性蛋白和可溶性糖含量变化较平缓,且差异不显著,在接种后期(34 d)有升高的趋势;接种5 d以后,感病无性系叶片类黄酮和总酚含量始终显著高于抗病无性系。研究发现,泡核桃抗病无性系叶片带菌率较低,较难受到侵染,并且通过提高POD和APX活性以及积累较多叶绿素、可溶性蛋白和可溶性糖来应对病原菌侵染引起的氧化胁迫,抑制病原菌的繁殖,从而提高其抗病能力。     

2021年膜翅目新增分类单元

本文对2021年发表的膜翅目昆虫新分类单元进行了梳理和总结。结合数据库检索, 基于标本记录, 全球膜翅目学者于2021年发表该目新分类单元的期刊论文355篇, 新增分类单元条目共1,152条, 隶属于21总科66科416属, 包括5新科4新亚科83新属3新亚属1,054新种和3新亚种。现生类群相关期刊论文309篇, 新增分类单元条目980条, 隶属于18总科52科332属, 包括2新科26新属3新亚属946新种和3新亚种。绝灭类群相关期刊论文46篇, 新增分类单元条目172条, 隶属于14总科27科86属, 包括3新科4新亚科57新属和108新种。2021年中国膜翅目新增分类单元的相关期刊论文83篇, 新增分类单元条目235条, 隶属于17总科34科91属, 包括3新属(绝灭类群1新属)和232新种(绝灭类群2新种); 现生类群中新增的2属分别记录自台湾和浙江, 新种数量排前五位的省级行政单位有云南(54个)、浙江(42个)、福建(18个)、西藏(18个)和新疆(16个)。在全球现生、绝灭和中国现生膜翅目总科新物种数量的对比中, 姬蜂总科新种数量最多, 分别约占全球现生、绝灭和中国现生膜翅目新种总数的32.5% (307个/946个)、19.4% (21个/108个)和37.0% (85个/230个)。有关现生膜翅目新种发表情况, 在洲级地理单元中, 亚洲发表新种数量最多, 约占56.9% (538个); 在洲级地理亚单元中, 东亚发表新种数量最多, 约占28.6% (271个); 在国家和地区行政单元中, 中国发表新种数量最多, 约占24.3% (230个)。在76种期刊的355篇论文中, 有348篇英文论文、4篇中文论文和3篇法语论文。这些结果表明, 中国膜翅目分类在全球膜翅目分类中发挥着十分重要的作用。     

Brain-derived neurotrophic factor: A steroidogenic regulator of Leydig cells

The brain-derived neurotrophic factor (BDNF) was first recognized for its roles in the peripheral and central nervous systems, and its complex functions on mammalian organs have been extended constantly. However, to date, little is known about its effects on the male reproductive system, including the steroidogenesis of mammals. The purpose of this study was to elucidate the effects of BDNF on testosterone generation of Leydig cells and the underlying mechanisms. We found that BDNF-induced proliferation of TM3 Leydig cells via upregulation of proliferating cell nuclear antigen ( Pcna) and promoted testosterone generation as a result of upregulation of steroidogenic acute regulatory protein ( Star), 3b-hydroxysteroid dehydrogenase ( Hsd3b1), and cytochrome P450 side-chain cleavage enzyme ( Cyp11a1) both in primary Leydig cells and TM3 Leydig cells, which were all attenuated in Bdnf knockdown TM3 Leydig cells. Furthermore, the possible mechanism of testosterone synthesis was explored in TM3 Leydig cells. The results showed that BDNF enhanced extracellular signal-regulated protein kinases 1 and 2 (ERK1/2) phosphorylation, and the effect was disrupted by Bdnf deletion. Moreover, PD98059, a potent selective inhibitor of ERK1/2 activation, compromised BDNF-induced testosterone generation and upregulation of Star, Hsd3b1, and Cyp11a1. The Bdnf knockdown assay, on the other hand, indicated the autocrine effect of BDNF on steroidogenesis in TM3 Leydig cells. On the basis of these results, we concluded that BDNF, acting as an autocrine factor, induced testosterone generation as a result of the upregulation of Star, Hsd3b1, and Cyp11a1 via stimulation of the ERK1/2 pathway.     

Construction of a sensitive pyrogen-testing cell model by site-specific knock-in of multiple genes

A pyrogen test is crucial for evaluating the safety of drugs and medical equipment, especially those involved in injections. As existing pyrogen tests, including the rabbit pyrogen test, the limulus amoebocyte lysate (LAL) test and the monocyte activation test have limitations, development of new models for pyrogen testing is necessary. Here we develop a sensitive cell model for pyrogen test based on the lipopolysaccharides (LPS) signal pathway. TLR4, MD2, and CD14 play key roles in the LPS-mediated pyrogen reaction. We established a new TLR4/MD2/CD14-specific overexpressing knock-in cell model using the CRISPR/CAS9 technology and homologous recombination to detect LPS. Stimulation of our TLR4/CD14/MD2 knock-in cell line model with LPS leads to the release of the cytokines IL-6 and TNF-alpha, with a detection limit of 0.005 EU/ml, which is greatly lower than the lower limit of 0.015 EU/ml detected by the Tachypleus amebocyte lysate (TAL) assay.     

Moderate- and Low-Dose of Atorvastatin Alleviate Cognition Impairment Induced by High-Fat Diet via Sirt1 Activation

Neurochemical Research - Mounting evidences have demonstrated that diet-induced obesity is associated with cognition impairment via increasing oxidative stress and inflammation in the brain....     

Molecular Modelling reveals the inhibition mechanism and structure–activity relationship of curcumin and its analogues to Staphylococcal aureus Sortase A

Previous studies found that the activity of Sortase A, a bacterial surface protein from Staphylococcus aureus, was inhibited by curcumin and its analogues. To explore this inhibitory mechanism, Sortase A and its inhibitors in complex systems were studied by molecular docking, molecular modelling, binding energy decomposition calculation and steered molecular dynamics simulations. Energy decomposition analysis indicated that PRO-163, LEU-169, GLN-172, ILE-182 and ILE-199 are key residues in Sortase A-inhibitor complexes. Furthermore, interactions between the methoxyl group on the benzene ring in the conjugated molecule (curcumin, demethoxycurcumin, bisdemethoxycurcumin) and VAL-168, LEU-169 and GLN-172 induce the inhibitory activity based on the energy decomposition and distance analyses between the whole residues and inhibitors. However, because of its coiled structure, the non-conjugated molecule, tetrahydrocurcumin, with key residues in the binding sites of Sortase A, interacted weakly with SrtA, leading to the loss of inhibitory activity. Based on these results, the methoxyl group on the benzene ring in the conjugated molecule largely influenced the inhibitory activity of the Sortase A inhibitors.