La séquence mésolithique et néolithique du Trou Al’Wesse (Belgique) : résultats pluridisciplinaires

The site of Trou Al’Wesse has been interpreted as a site of possible contact between Mesolithic and Neolithic populations, given the discovery of Neolithic ceramics and Mesolithic tools in stratum 4. However, recent excavations have also revealed the presence of three Early Mesolithic facies overlain by a Neolithic layer, while a Late Mesolithic presence is suggested for a fourth facies at the base of the terrace slope. Lithic and faunal analyses, as well as spatial analysis of the stratigraphic position of material recovered, indicate a clear separation of Mesolithic and Neolithic occupations. We present a new interpretation of the sequence of Holocene human occupations at Trou Al’Wesse in light of these data, arguing that the site was regularly occupied during the Early Mesolithic, forming a palimpsest of these visits, followed by an occupational hiatus and then reoccupation during the Late Mesolithic. The Early Neolithic is a separate occupation clearly unrelated to the Early Mesolithic underlying it, but ongoing fieldwork may recover data concerning the Final Mesolithic and its relation to the Early Neolithic at the site.     

Biogeographical research on European species of the lichen genus Physconia

Abstract Aim The (world) distribution of the European species of Physconia Poelt (Lichenes: Physciaceae) [except Ph. distorta (With.) J. R. Laundon and Ph. americana Essl.] was investigated. The study was complemented by data on the ecological behaviour of the species. Location The location of the study is the whole world with a local emphasis on Europe. Methods The geographical distribution of the lichen species under consideration was investigated from collection data of herbaria and field studies in a databank. Additional data were taken from existing literature and critically considered. Distribution maps were created with ArcView GIS. The distribution patterns are expressed as three‐dimensional areal formulas, regarding zonal distribution, altitudinal range and oceanity of the species distributions, using the method of Meusel et al. (1965 ). Results The distribution patterns of the ten Physconia taxa considered are represented in detailed maps and expressed as three‐dimensional areal formulas. The ecological behaviour was discussed. Physconia muscigena and Ph. perisidiosa are species of bipolar distribution type, the other species are holarctic types. Physconia detersa and Ph. enteroxantha occur in both Eurasia and North America, the remaining species (Ph.grisea ssp. grisea, Ph. grisea ssp. lilacina, Ph. petraea, Ph. servitii, Ph. subpulverulenta and Ph.venusta) are pure Old world taxa with a much more limited distribution.The majority of the European Physconia taxa are distributed meridionally to submeridionally and occur preferentially in suboceanic areas. Main conclusions Some of the species under consideration have a wide distribution, nevertheless they show clear affinities to ecological conditions that influence their distribution patterns. A number of species show not only zonal and regional restrictions, but also affinities to the western climatic type. The Mediterranean is the centre of diversity of the genus Physconia in Europe.     

Chemical synthesis and biological activity of novel brominated 7-deazaadenosine-3′,5′-cyclic monophosphate derivatives

Synthetic derivatives of cyclic adenosine monophosphate, such as halogenated or other more hydrophobic analogs, are widely used compounds, to investigate diverse signal transduction pathways of eukaryotic cells. This inspired us to develop cyclic nucleotides, which exhibit chemical structures composed of brominated 7-deazaadenines and the phosphorylated ribosugar. The synthesized 8-bromo- and 7-bromo-7-deazaadenosine-3′,5′-cyclic monophosphates rank among the most potent activators of cyclic nucleotide-regulated ion channels as well as cAMP-dependent protein kinase. Moreover, these substances bind tightly to exchange proteins directly activated by cAMP.     

Seed bank diversity in mesic grasslands in relation to vegetation type,management and site conditions

Questions: 1. Do different management types (i.e. hay meadow, silage meadow, meadow‐pasture, pasture) have different impact on the size and composition of the seed bank of mesic grassland (Arrhenatheretalia)? 2. How strong is the effect of management on the seed bank in relation to above‐ground vegetation, edaphic factors and land‐use history? 3. Are there differences in C‐S‐R plant strategy types and seed longevity under different management regimes? Location: Lahn‐Dill Highlands in central‐western Germany. Methods: Above‐ground vegetation and the soil seed bank of 63 plots (at 21 sites) in mesic grasslands were studied. Differences between management types in quantitative seed bank traits and functional characteristics were tested by ANOVA. The impact of management, above‐ground vegetation, site conditions and land‐use history on seed bank composition were analysed by partial CCA. Results: Management had no significant impact on species richness and density of the seed bank but significantly influenced their floristic composition and functional characteristics. CCA revealed that even after adjustment for soil chemical parameters and above‐ground vegetation management still had significant impact on seed bank composition. ANOVA revealed that silage meadows contained higher proportions of R‐strategy compared to hay meadows. In contrast, in hay meadows and meadow‐pastures proportions of S‐strategy were higher than in silage meadows. Conclusions: The type of grassland management has little impact on quantitative seed bank traits. Management types with a high degree of disturbance lead to an increase of species following a ruderal strategy in the seed bank. Irrespective of management type only a limited proportion of characteristic grassland species is likely to re‐establish from the seed bank after disappearance from above‐ground vegetation.     

The thiamine kinase (YcfN) enzyme plays a minor but significant role in cobinamide salvaging in Salmonella enterica

Cobinamide (Cbi) salvaging is impaired, but not abolished, in a Salmonella enterica strain lacking a functional cobU gene. CobU is a bifunctional enzyme (NTP:adenosylcobinamide [NTP:AdoCbi] kinase, GTP:adenosylcobinamide-phosphate [GTP:AdoCbi-P] guanylyltransferase) whose AdoCbi kinase activity is necessary for Cbi salvaging in this bacterium. Inactivation of the ycfN gene in a DeltacobU strain abrogated Cbi salvaging. Introduction of a plasmid carrying the ycfN(+) allele into a DeltacobU DeltaycfN strain substantially restored Cbi salvaging. Mass spectrometry data indicate that when YcfN-enriched cell extracts were incubated with AdoCbi and ATP, the product of the reaction was AdoCbi-P. Results from bioassays confirmed that YcfN converted AdoCbi to AdoCbi-P in an ATP-dependent manner. YcfN is a good example of enzymes that are used by the cell in multiple pathways to ensure the salvaging of valuable precursors.     

Various expression-augmenting DNA elements benefit from STAR-Select, a novel high stringency selection system for protein expression

The creation of highly productive mammalian cell lines often requires the screening of large numbers of clones, and even then expression levels are often low. Previously, we identified DNA elements, anti-repressor or STAR elements, that increase protein expression levels. These positive effects of STAR elements are most apparent when stable clones are established under high selection stringency. We therefore developed a very high selection system, STAR-Select, that allows the formation of few but highly productive clones. Here we compare the influence of STAR and other expression-augmenting DNA elements on protein expression levels in CHO-K1 cells. The comparison is done in the context of the often-used cotransfection selection procedure and in the context of the STAR-Select system. We show that STAR elements, as well as MAR elements induce the highest protein expression levels with both selection systems. Furthermore, in trans cotransfection of multiple copies of STAR and MAR elements also results in higher protein expression levels. However, highest expression levels are achieved with the STAR-Select selection system, when STAR elements or MARs are incorporated in a single construct. Our results also show that the novel STAR-Select selection system, which was developed in the context of STAR elements, is also very beneficial for the use of MAR elements.     

Testing for biogeographic mechanisms promoting divergence in Caribbean crickets (genus Amphiacusta)

Aim This work examines whether the history of diversification of Amphiacusta (Orthoptera, Gryllidae) in the Caribbean corresponds to a vicariant or a dispersalist model. Location The Greater Antillean islands of the Caribbean region. Methods The phylogenetic relationships among species were estimated using a procedure that directly estimates the underlying species tree from independent loci (in this case, one mitochondrial and one nuclear locus). This tree was then used to test for topological congruence with a vicariant model, and to estimate divergence times. Results The analyses based on the expected pattern of species divergence (i.e. species‐tree topology) support a vicariant model. With the notable exception of a dispersal event marking the colonization of Jamaica, the timing of the events are generally consistent with a vicariant scenario, given the current taxon sampling and potential errors with dating the divergence events. Main conclusions The tendency of species to co‐segregate by island suggests that intra‐island diversification is common. Despite their flightlessness, species of Amphiacusta are apparently capable of long‐distance dispersal, such as colonization from the Puerto Rican/Virgin Island bank to Jamaica. The topology of the species tree is consistent with a vicariant model of divergence, and the dates of divergence between island groups are generally consistent with an island–island vicariance model. A strict island–island vicariance scenario can, however, be rejected because of inferred dispersal events such as the colonization of Jamaica. Nevertheless, the biogeographic tests suggest that most of the diversity was generated under a combination of intra‐island diversification and island–island vicariance. Additional sampling of taxa will be needed to verify this hypothesized scenario. Our findings indicate that Amphiacusta presents an ideal opportunity for examining the role of sexual selection in promoting diversification, which would complement the large number of studies focused on adaptive divergence of Caribbean taxa.     

Employing epigenetics to augment the expression of therapeutic proteins in mammalian cells

Recombinant proteins form an increasingly large part of the portfolio of biopharmaceutical companies. Production of these often complex transgenic proteins is achieved predominantly in mammalian cell lines but the process is hampered by low yields and unstable expression. Some of these problems are caused by gene silencing at the level of chromatin - so-called epigenetic gene silencing. Here, we describe approaches, which have emerged during the past few years, designed to interfere with epigenetic gene silencing with the aim of enhancing and stabilizing transgene expression. These include targeting histones, the inclusion of specific DNA elements and targeting sites of high gene-expression. We conclude that employing epigenetic gene regulation tools, in combination with further process optimization, might represent the next step forward in the production of therapeutic proteins.     

Transposition of copia-like nomadic elements can be induced by heat shock

Summary Four males of an isogenic gt w^a Drosophila line were heat shocked and then crossed with isogenic untreated females. The genomic distributions of the elements of five copia-like families were analyzed in the four F₁ flies by the Southern technique and compared with those in the untreated isogenic line. The pattern heterogeneity observed in the F₁ samples shows that extensive rearrangements can be induced by heat shock.Presented at the FEBS Symposium on Genome Organization and Evolution, held in Crete, Greece, September 1–5, 1986