Histone H4 Acetylation and Replication Timing in Chinese Hamster Chromosomes

The distribution of acetylated isoforms of histone H4 along Chinese hamster chromosomes has been studied by immunostaining with antibodies recognizing H4 acetylated at defined lysines in its N-terminal domain. The heterochromatic long arm of the X chromosome in both female (CHO) and male (DON) cell lines is underacetylated at three out of four lysines (5, 8, and 12). In contrast, the level of acetylation at lysine 16, which is the first to be acetylated in mammals, was similar in X chromosomes and autosomes. Labeling of the cells with bromodeoxyuridine (BrdU) to mark late-replicating chromosome domains, followed by double immunostaining with antibodies to BrdU and acetylated H4, showed a close, though not perfect, correlation between late replication and low levels of H4 acetylation. The results show that levels of histone acetylation are associated with the replication timing of defined domains on both the X chromosome and autosomes, but the exceptions we observe suggest that this link is not absolute or essential.     

Reinstatement of the genus Paralona Sramek-Husek et al., 1962, and assessment of morphological variability in the Paralona pigra-group (Anomopoda: Chydoridae)

We studied the morphology of some members of the Chydorus piger-group, using populations from Karelia (Russia), France, Germany, the Azores, Magadan (East Siberia), Newfoundland (Canada), Venezuela, Zambia, and Bolivia, and move Chydorus piger Sars, 1861 to the genus Paralona Sramek-Husek et al., 1962, which we redefine using traditional characters (first antenna with subapical and apical esthetascs, second antenna with only six setae, ventral valve rim fully setulated with setae in marginal position except between anterior bend and well-developed anterior flange), as well as structural features of the trunk limbs, especially 1 and 2. Chydorus and Pleuroxus are the nearest relatives of Paralona.The genus presently contains only the species P. pigra (Sars, 1861). This, however, shows considerable morphological variation and might therefore be composed of several related taxa, in need of a closer definition.     

Application of three-dimensional molecular hydrophobicity potential to the analysis of spatial organization of membrane domains in proteins: I. Hydrophobic properties of transmembrane segments of Na+, K+-ATPase

A new computer-aided molecular modeling approach based on the concept of three-dimensional (3D) molecular hydrophobicity potential has been developed to calculate the spatial organization of intramembrane domains in proteins. The method has been tested by calculating the arrangement of membrane-spanning segments in the photoreaction center ofRhodopseudomonas viridis and comparing the results obtained with those derived from the X-ray data. We have applied this computational procedure to the analysis of interhelical packing in membrane moiety of Na⁺, K⁺-ATPase. The work consists of three parts. In Part I, 3D distributions of electrostatic and molecular hydrophobicity potentials on the surfaces of transmembrane helical peptides were computed and visualized. The hydrophobic and electrostatic properties of helices are discussed from the point of view of their possible arrangement within the protein molecule. Interlocation of helical segments connected with short extramembrane loops found by means of optimization of their hydrophobic/hydrophilic contacts is considered in Part II. The most probable 3D model of packing of helical peptides in the membrane domain of Na⁺, K⁺-ATPase is discussed in the final part of the work.     

A new transposable element in Chironomus thummi

Summary A 1.7 kb long transposable element called TECth1 was found in the 3 flanking region of aChironomus thummi Balbiani ring gene. As shown by sequence comparison with a second copy, TECthl is characterized by a perfect terminal inverted repeat of 17 by flanked by a duplicated target site of 8 bp, four internal imperfect inverted repeats of 17 to 26 by and terminal regions of about 0.25 kb with a high number of short direct repeats of the consensus sequence ACTTT or permutated and mutated forms such as TTTAC or ACTAT. The terminal inverted repeats and the 8 by target site duplication are reminiscent ofDrosophila P and hobo elements but no long open reading frame starting with ATG is present, suggesting that the two TECthl copies studied represent deletion derivatives of a longer element coding for its own transposase. In situ hybridization revealed about 75 labelled sites distributed over all chromosomes with the Balbiani ring locus most strongly labelled. Fifty percent of the sites are specific for a given individual, and these variable sites are often heterozygous for the element.     

Co-Occlusion and Persistence of a Baculovirus Mutant Lacking the Polyhedrin Gene

A co-occlusion process was evaluated as a commercially and ecologically acceptable strategy for the development of genetically improved baculovirus insecticides. Coinfection of Spodoptera frugiperda (IPLB-SF-21) tissue culture cells with Autographa californica nuclear polyhedrosis virus (AcMNPV) and an AcMNPV mutant (Ac-E10) lacking the polyhedrin gene resulted in occlusion of both virus types within polyhedra. The amount of occluded Ac-E10 virions in progeny polyhedra populations during serial passage in Trichoplusia ni larvae was evaluated. Maintenance of the mutant in progeny polyhedra required polyhedra inocula containing equal numbers of the two virus types at a high dose. A significant reduction in occluded mutant nucleocapsids occurs with inoculum levels below a 100% lethal dose. At inoculum levels below a 30% lethal dose, the majority of fourth-instar larvae were infected with only one type of virus. The commercial application and ecological advantages of the co-occlusion process are discussed.     

Tumor necrosis factor α induction in human monocytes

The present study was undertaken to assess the presence of tumor necrosis factor (TNF)-α mRNA and protein in circulating human blood monocytes and to study the TNF-α gene expression in human monocytes isolated by continuous Percoll gradient fractionation. The technique of RNA isolation directly from the blood samples was used to study TNF-α mRNA expression in circulating human blood leukocytes. It was shown that human blood leukocytes of healthy donors contained no presynthesized pool of TNF-α mRNA as well as no TNF-α protein. It was found that early pretreatment with cycloheximide interfers with TNF-α mRNA induction by Staphylococcus aureus.     

Pentagonal Model of Membrane Channel of Na,K-ATPase. Computer Simulations of Structure and Electrostatic Properties

Computational modeling of the membrane channel of a sodium pump (Na,K-ATPase) is performed and the role of selected amino acids in binding of sodium ions is discussed. The channel is build as a pentameric 10-helix bundle. The transmembrane a-helices are determined from hydropathy calculations. The spatial arrangement of transmembrane a-helices is chosen according to the size of a pore, intersegment loops geometry, and orientation hydrophobicities of transmembrane segments. The latter property provides the numerical estimate of the distribution of the hydrophobic properties at the helical wheels. The model system involves the peptide part and 150 water molecules that soak the pore. The channel structure is submitted to geometry minimization and molecular dynamics relaxation. The relative stability of the channel states with the negatively charged acidic residues belonging to the pore interior decrease in the order Glu-334 > Asp-810 > Glu-785 > Asp-814. The estimated binding energies of 1-3 Na⁺ ions with the channel with the ionized Glu-334 and Glu-785 amino acids are in the range allowing the exothermic complexation.Electronic Supplementary Material available.     

Early cerebral metabolic and electrophysiological recovery during controlled hypoxemic resuscitation in piglets

We tested the hypothesis that controlledhypoxemic resuscitation improves early cerebral metabolic andelectrophysiological recovery in hypoxic newborn piglets. Severelyhypoxic anesthetized piglets were randomly divided into threeresuscitation groups: hypoxemic, 21%O₂, and 100%O₂ groups (8 in each group). Thehypoxemic group was mechanically ventilated with 12-18%O₂ adjusted to achieve a cerebralvenous O₂ saturation of17-23% (baseline; 45 ± 1%). Base excess (BE) reached22 ± 1 mM at the end of hypoxia. During a 2-h resuscitationperiod, no significant differences in time to recovery ofelectroencephalography (EEG), quality of EEG at recovery, orextracellular hypoxanthine concentrations in the cerebral cortex andstriatum were found among the groups. BE and plasma hypoxanthine,however, normalized significantly more slowly during controlledhypoxemic resuscitation than during resuscitation with 21 or 100%O₂. We conclude that early brainrecovery during controlled hypoxemic resuscitation was as efficient as,but not superior to, recovery during resuscitation with 21 or 100%O₂. The systemic metabolicrecovery from hypoxia, however, was delayed during controlled hypoxemicresuscitation.

     

Correlation Between Self-Association Modes and GTPase Activation of Dynamin

The GTPase activity of dynamin is obligatorily coupled, by a mechanism yet unknown, to the internalization of clathrin-coated endocytic vesicles. Dynamin oligomerizes in vitro and in vivo and both its mechanical and enzymatic activities appear to be mediated by this self-assembly. In this study we demonstrate that dynamin is characterized by a tetramer/monomer equilibrium with an equilibrium constant of 1.67 × 10¹⁷ M^–3. Stopped-flow fluorescence experiments show that the association rate constant for 2(3)-O-N-methylanthraniloyl (mant)GTP is 7.0 × 10^–5 M^–1 s^–1 and the dissociation rate constant is 2.1 s^–1, whereas the dissociation rate constant for mantdeoxyGDP is 93 s^–1. We also demonstrate the cooperativity of dynamin binding and GTPase activation on a microtubule lattice. Our results indicate that dynamin self-association is not a sufficient condition for the expression of maximal GTPase activity, which suggests that dynamin molecules must be in the proper conformation or orientation if they are to form an active oligomer.