The phylogenetic position of taxaceae based on 18S rRNA sequences

The evolutionary position of the yew family, Taxaceae, has been very controversial. Some plant taxonomists strongly advocate excluding Taxaceae from the conifer order and raising its taxonomic status to a new order or even class because of its absence of seed cones, contrary to the case in the majority of conifers. However, other authors believe that the Taxaceae are not fundamentally different from the rest of the conifers except in that they possess the most reduced solitary-ovule cones. To resolve the controversy, we have sequenced the 18S rRNA genes from representative gymnosperms: Taxus mairei (Taxaceae), Podocarpus nakaii (Podocarpaceae), Pinus luchuensis (Pinaceae), and Ginkgo biloba (Ginkgoales). Our phylogenetic analysis of the new sequence data with the published 18S rRNA sequence of Zamia pumila (a cycad) as an outgroup strongly indicates that Taxus, Pinus, and Podocarpus form a monophyletic group with the exclusion of Ginkgo and that Taxus is more closely related to Pinus than to Podocarpus. Therefore, Taxaceae should be classified as a family of Coniferales. Our finding that Taxaceae, Pinaceae, and Podocarpaceae form a clade contradicts both the view that the uniovulate seed of Taxaceae is a primitive character and the view that the Taxaceae are descendants of the Podocarpaceae. Rather, the uniovulate seed of Taxaceae and that of some species of Podocarpus appear to have different origins, probably all reduced from multiovulate cones. Correspondence to: W.-H. Li     

Regulation of Syrm and Nodd3 in Rhizobium Meliloti

The early steps of symbiotic nodule formation by Rhizobium on plants require coordinate expression of several nod gene operons, which is accomplished by the activating protein NodD. Three different NodD proteins are encoded by Sym plasmid genes in Rhizobium meliloti, the alfalfa symbiont. NodD1 and NodD2 activate nod operons when Rhizobium is exposed to host plant inducers. The third, NodD3, is an inducer-independent activator of nod operons. We previously observed that nodD3 carried on a multicopy plasmid required another closely linked gene, syrM, for constitutive nod operon expression. Here, we show that syrM activates expression of the nodD3 gene, and that nodD3 activates expression of syrM. The two genes constitute a self-amplifying positive regulatory circuit in both cultured Rhizobium and cells within the symbiotic nodule. We find little effect of plant inducers on the circuit or on expression of nodD3 carried on pSyma. This regulatory circuit may be important for regulation of nod genes within the developing nodule.     

Quantum yields for uptake of carbon dioxide in C3 vascular plants of contrasting habitats and taxonomic groupings

The maximum quantum yields (_a,c) for CO₂ uptake in low-oxygen atmospheres were determined for 11 species of C₃ vascular plants of diverse taxa, habitat and life form using an Ulbricht-sphere leaf chamber. Comparisons were also made between tissues of varied age within species. The species examined were Psilotum nudum (L.) P. Beauv., Davallia bullata Wall. ex Hook., Cycas revoluta Thunb., Araucaria heterophylla (Salisb.) Franco, Picea abies (L.) Karst., Nerium oleander L., Ruellia humilis Nutt., Pilea microphylla (L.) Karst., Beaucarnea stricta Lem., Oplismenus hirtellus (L.) P. Beauv. and Poa annua L. Quantum yields were calculated from the initial slopes of the response of CO₂ uptake to the quantity of photons absorbed in conditions of diffuse lighting. Regression analysis of variance of the initial slopes of the response of CO₂ uptake to photon absorption failed to show any statistically significant differences between age classes within species or between the mature photosynthetic organs of different species. The constancy of _a,c was apparent despite marked variation in the light-saturated rates of CO₂ uptake within and between species. The mean _a,c was 0.093±0.003 for 11 species. By contrast, surface absorptance varied markedly between species from 0.90 to 0.60, producing proportional variation in the quantum yield calculated on an incidentlight basis. The ratio of variable to maximum fluorescence emission at 695 nm for the same tissues also failed to show any statistically significant variation between species, with a mean of 0.838±0.008. Mean values of _a,c reported here for C₃ species, in the absence of photorespiration, are higher than reported in previous surveys of vascular plants, but consistent with recent estimates of the quantum yields of O₂ evolution.Abbreviations and Symbols A rate of CO₂ uptake per unit projected area (mol · m^–2 · s^–1) - F_m the maximum fluorescence emission at 695 nm in saturating excitation light when closure of PSII reaction centres is maximal (relative units) - F_o the ground fluorescence at 695 nm when all PSII reaction centres are assumed open (relative units) - F_v the difference between F_m and F_o - J_Q rate of CO₂ uptake by the sample (nmol · s^–1) - J_Q rate of photon absorption by the sample (nmol · s^–1) - Q absorbed photon flux per unit of projected area (nmol · m^–2 · s^–1) - ₁ the light absorptance of photosynthetic organs (dimensionless) - s₁ and s'₁ the total and projected surface areas of the photosynthetic organs examined (m²) - _a,c and _i,c the quantum yields for CO₂ uptake on an absorbed- and incident-light basis, respectively (dimensionless) - _a,o the quantum yield for O₂ evolution on an absorbed-light basis (dimensionless) This work was supported by grant PI7179-BIO, FWF, Austria to H.B-N. and by a British Council travel award to S.P.L. This work was completed under the auspices of U.S. Department of Energy under Contract No. DE-AC02-76CH00016. We also thank Dr. K.J. Parkinson of PP Systems, Hitchin, UK for the loan of a prototype of a commercial integrating-sphere leaf chamber developed from our design.     

显脉獐牙菜的单萜环烯醚甙

近年来,肝炎发病率高,青叶胆(Swertia mileensis)因此被大量采挖,野生青叶胆资源逐年减少。为发掘新药源,我们对云南产狭叶獐牙菜(S.angustifolia)和显脉獐牙菜(S.nervasa)的化学成分进行了研究。本文报道从中分离鉴定的4个单萜环烯醚甙Ⅰ—Ⅳ。Ⅰ、Ⅲ、Ⅳ分别为维哥罗甙(vegeloside)、獐牙菜甙(sweroside)和獐牙菜苦甙(swertiamarin),Ⅱ是Ⅰ的同分异构体,命名为显脉獐牙菜甙(nervoside)。显脉獐牙菜甙(Ⅱ)白色无定形粉末,味极苦。UVλ-_(max)~(EtOH):243nm(log ε-3.89)。IR v_(max)~(KBr) cm~(-1):3400、1700和1610,显示单萜环烯醚的特征吸收峰显脉獐牙菜;显脉獐牙菜甙;单萜环烯醚甙     

Rice ubiquitin-conjugating enzyme OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a

Ubc13 is required for Lys63-linked polyubiquitination and innate immune responses in mammals, but its functions in plant immunity still remain largely unknown. Here, we used molecular biological, pathological, biochemical, and genetic approaches to evaluate the roles of rice OsUbc13 in response to pathogens. The OsUbc13-RNA interference (RNAi) lines with lesion mimic phenotypes displayed a significant increase in the accumulation of flg22- and chitin-induced reactive oxygen species, and in defence-related genes expression or hormones as well as resistance to Magnaporthe oryzae and Xanthomonas oryzae pv oryzae. Strikingly, OsUbc13 directly interacts with OsSnRK1a, which is the α catalytic subunit of SnRK1 (sucrose non-fermenting-1-related protein kinase-1) and acts as a positive regulator of broad-spectrum disease resistance in rice. In the OsUbc13-RNAi plants, although the protein level of OsSnRK1a did not change, its activity and ABA sensitivity were obviously enhanced, and the K63-linked polyubiquitination was weaker than that of wild-type Dongjin (DJ). Overexpression of the deubiquitinase-encoding gene OsOTUB1.1 produced similar effects with inhibition of OsUbc13 in affecting immunity responses, M. oryzae resistance, OsSnRK1a ubiquitination, and OsSnRK1a activity. Furthermore, re-interfering with OsSnRK1a in one OsUbc13-RNAi line (Ri-3) partially restored its M. oryzae resistance to a level between those of Ri-3 and DJ. Our data demonstrate OsUbc13 negatively regulates immunity against pathogens by enhancing the activity of OsSnRK1a.     

毛乌素沙地杨柴灌木林恢复演替过程中土壤活性有机碳组分变化特征

土壤活性有机碳是土壤有机碳(SOC)的活性部分,是衡量土壤质量和健康状况的重要指标,能够反映植被恢复演替过程中土壤环境的早期变化。但在SOC贫瘠的沙地,长期恢复演替如何影响土壤活性有机碳组分尚不清楚。本研究以毛乌素沙地杨柴人工灌木林为研究对象,分别选取未造林(CK)与造林年限9 a、18 a和30 a的杨柴人工灌木林,探究毛乌素沙地杨柴人工灌木林恢复演替过程中土壤可溶性有机碳(DOC)、微生物量碳(MBC)、易氧化有机碳(ROC)和SOC变化规律。结果表明：(1)毛乌素沙地杨柴灌木林随恢复演替年限增加土壤固碳能力增强,但在恢复演替18 a时出现转折点,恢复演替18—30 a时土壤固碳速率相对减缓;(2)表层0—10 cm土壤DOC、MBC和ROC对恢复演替响应较为敏感,恢复演替过程中表层土壤活性有机碳各组分含量逐渐升高;(3)恢复演替年限并未对土壤活性有机碳占SOC比例产生显著影响,同时也未显著改变碳库活度。综上所述,毛乌素沙地杨柴灌木林恢复演替有助于土壤活性有机碳和SOC积累,但长期恢复演替是否持续对土壤活性有机碳固持产生积极作用仍需进一步研究。     

金沙江下游典型库区消落带植被恢复模式

消落带植被分布、生活型、多样性的调查研究显著促进了消落带植被恢复技术的进步,然而相邻两梯级库区消落带植被分布的差异以及植被群落特征的年际变化并不明确。此外,金沙江下游部分区域表现出一定的干热特征,其影响下的消落带植被群落特征有待深入了解。基于2019年和2021年向家坝和溪洛渡库区消落带植被调查结果,分析表明：(1)金沙江下游消落带按照下垫面特性主要分为硬岩型、软岩型、松软堆积型3种类型,坡度平缓的松软堆积型消落带是植被恢复的主要类型;(2)整体上,消落带优势植被类型是一年生和多年生草本,单优势种、少优势种群落较为普遍,两个库区消落带优势种重要值差异显著,植被生活型较少;(3)向家坝、溪洛渡库区消落带在分别经历6次和8次周期性水淹后,消落带植被分布与群落物种多样性特征变化不显著,表明消落带植被群落结构相对稳定。综上说明向家坝、溪洛渡两个相邻的梯级库区消落带植被恢复需要以灌草为主,且具有不同的潜在恢复模式,因此需要对应采取不同的恢复策略。研究对于科学指导金沙江下游梯级水电站库区消落带植被恢复具有重要意义。     

Elastic priors to dynamically borrow information from historical data in clinical trials

Use of historical data and real-world evidence holds great potential to improve the efficiency of clinical trials. One major challenge is to effectively borrow information from historical data while maintaining a reasonable type I error and minimal bias. We propose the elastic prior approach to address this challenge. Unlike existing approaches, this approach proactively controls the behavior of information borrowing and type I errors by incorporating a well-known concept of clinically significant difference through an elastic function, defined as a monotonic function of a congruence measure between historical data and trial data. The elastic function is constructed to satisfy a set of prespecified criteria such that the resulting prior will strongly borrow information when historical and trial data are congruent, but refrain from information borrowing when historical and trial data are incongruent. The elastic prior approach has a desirable property of being information borrowing consistent, that is, asymptotically controls type I error at the nominal value, no matter that historical data are congruent or not to the trial data. Our simulation study that evaluates the finite sample characteristic confirms that, compared to existing methods, the elastic prior has better type I error control and yields competitive or higher power. The proposed approach is applicable to binary, continuous, and survival endpoints.     

Antituberculous drug resistance in Manitoba from 1980 to 1989.

OBJECTIVES: To estimate the magnitude of antituberculous drug resistance and identify the risk factors for its development in tuberculosis patients in Manitoba over a 10-year period. As well, to examine the clinical course of the patients whose initial or subsequent isolates of Mycobacterium tuberculosis were resistant to one or more drugs. DESIGN: Comparison of drug-resistant and non-drug-resistant cases of tuberculosis. SETTING: Manitoba. PATIENTS: All people with tuberculosis reported to the Central Tuberculosis Registry of Manitoba between Jan. 1, 1980, and Dec. 31, 1989. MAIN OUTCOME MEASURES: Of 1478 cases of active tuberculosis 1086 were culture positive, and drug susceptibility testing was performed in these cases. The clinical course, including outcome of treatment, of all drug-resistant cases was described. RESULTS: Of 1086 culture-positive cases of tuberculosis 77 (7.1%) were drug resistant. Odds ratios suggested that the risk of drug resistance was significantly higher among the immigrants than among the other Canadians. Compared with the other Canadians the risk of drug resistance was 9.9 times greater among the immigrants in whom tuberculosis developed within the first year after arrival in Canada and 5.4 times greater among the immigrants in whom it developed 2 to 5 years after arrival in Canada. Of the 71 patients with drug-resistant disease whose type of resistance was known 62% had never taken antituberculous drugs before and 38% had. Most (91%) of the 77 cases of drug-resistant disease were resistant to first-line drugs, especially isoniazid and streptomycin. Thirty-two (42%) of the 77 cases were resistant to two or more first-line drugs. Of patients with drug-resistant disease a subgroup of 10 had disease that became resistant to several drugs over the 10-year period. The outcome of treatment in these individuals was poor, and they presented a particular public health problem. CONCLUSION: Resistance to one or more first-line antituberculous drugs continues to complicate the treatment of tuberculosis and may facilitate the spread of the disease.     

Effects of Mechanized,Deep Application of Slow-Release Fertilizer on Yield and Nitrogen,Phosphorus, and Potassium Utilization of Direct-Seeded Rice

Compared with the standard method of manual fertilizer broadcasting (MFB), mechanized hill-drilling direct-seeding with deep application of slow-release nitrogen fertilizer (MHDDF) is an efficient method to integrate both fertilization and seeding. However, there are few studies that combine the use of slow-release fertilizer with MHDDF. We sought to explore the combined effect of MHDDF with slow-release fertilizer on rice yield and nitrogen, phosphorus, and potassium utilization, compared to MFB. We compared three different MHDDF methods (D30: 450 kg ha^?1, D40: 600 kg ha^?1, D50: 750 kg ha^?1), with one MFB method (B50: 750 kg ha^?1), and one control (CK: 0 kg ha^?1). We found that the yield of all MHDDF method was higher than that of both the MFB method. Yield was the highest in the D50 treatment and was 14.14–46.03% higher than that in B50 treatment. Biomass accumulation, nutrient accumulation, and nutrient use efficiency were similarly higher in MHDDF method than both MFB and CK. Compared to B50, the D50 treatment increased nitrogen recovery efficiency by 170.53–231.50%, phosphorus recovery efficiency by 480.00–724.25%, and potassium recovery efficiency by 201.55–169.59%. Overall, we found that combining MHDDF with slow-release fertilizer was an effective method to increase rice yield and nutrient use efficiency compared with MFB.