Qualitative distinction of congeneric and introgressive mangrove species in mixed patchy forest assemblages using high spatial resolution remotely sensed imagery (IKONOS)

This paper is a preliminary report of the ability of IKONOS multispectral satellite imagery with a very high spatial resolution of 1 metre to distinguish two mangrove species in Sri Lanka belonging to the same genus (Rhizophora apiculata and R. mucronata). Not only is this an advancement for the monitoring of forests, it is even more important considering their patchy nature in Sri Lankan mangroves (in contrast to classically zoned forests). Apart from congeneric distinction, intro‐gressive species (Acrostichum aureum) can also be detected from IKONOS imagery, which is important in the early warning for cryptic ecological changes that may affect mangrove species composition (both floral and faunal) and functioning. The results tabulate the usage of various image composites, transformations and classifications, and indicate the danger of too much detail in remote sensing, and the need to apply an optimum resolution. We also highlight that the highest resolutions (as in pansharpened multispectral composites) remain invaluable for visual ecological investigations, which are not at all outdated by new digital satellite images of (sub)metre spatial resolution and their possibility for computer‐aided analysis.     

Estimating a Logistic Discrimination Functions When One of the Training Samples Is Subject to Misclassification: A Maximum Likelihood Approach

The problem of discrimination and classification is central to much of epidemiology. Here we consider the estimation of a logistic regression/discrimination function from training samples, when one of the training samples is subject to misclassification or mislabeling, e.g. diseased individuals are incorrectly classified/labeled as healthy controls. We show that this leads to zero-inflated binomial model with a defective logistic regression or discrimination function, whose parameters can be estimated using standard statistical methods such as maximum likelihood. These parameters can be used to estimate the probability of true group membership among those, possibly erroneously, classified as controls. Two examples are analyzed and discussed. A simulation study explores properties of the maximum likelihood parameter estimates and the estimates of the number of mislabeled observations.     

Oribatid mites: prospects for their use in ecotoxicology

Oribatid mites are a group of arthropods that have had remarkable evolutionary success with regard to species richness, variety of habitats colonized, life-cycle variation and reporductive patterns. The aim of this paper is to review some of the important features of Oribatida in relation to the possible use of these animals in ecotoxicological experiments. Their often sedentary way of living, combined with a narrow dependence on microhabitats qualify oribatids as potential indicator organisms for air and soil quality. Some species have been shown to be extremely sensitive to air pollutants such as SO₂ and NO₂. A low metabolic rate may be the driving force for slow development, low fertility, iteroparity and long adult life. Given these life-cycle characteristics, oribatids may be particularly vulnerable to intoxication by persistent contaminants. Work done on heavy metals suggests that the capacity for accumulation differs greatly between species. The camisiid Platynothrus peltifer accumulates high amounts of trace metals, specifically Mn. The toxicity of Cd, Cu and Pb has been studied in P. peltifer, demonstrating the necessity to consider egg production as a sensitive criterion. It is concluded that oribatid mites hold a great potential for use in ecotoxicology, due to the structural and functional complexity of their communities, and several peculiarities not found in other arthropods. The possibilities offered by this diverse group have not yet been fully employed by ecotoxicologists.     

The mechanical effects of different levels of cement penetration at the cement–bone interface

The mechanical effects of varying the depth of cement penetration in the cement–bone interface were investigated using finite element analysis (FEA) and validated using companion experimental data. Two FEA models of the cement–bone interface were created from micro-computed tomography data and the penetration of cement into the bone was varied over six levels each. The FEA models, consisting of the interdigitated cement–bone constructs with friction between cement and bone, were loaded to failure in tension and in shear. The cement and bone elements had provision for crack formation due to excessive stress. The interfacial strength showed a strong relationship with the average interdigitation (r²=0.97 and r²=0.93 in tension and shear, respectively). Also, the interface strength was strongly related with the contact area (r²=0.98 and r²=0.95 in tension and shear, respectively). The FEA results compared favorably to the stiffness–strength relationships determined experimentally. Overall, the cement–bone interface was 2.5 times stronger in shear than in tension and 1.15 times stiffer in tension than in shear, independent of the average interdigitation. More cracks occurred in the cement than in the bone, independent of the average interdigitation, consistent with the experimental results. In addition, more cracks were generated in shear than in tension. In conclusion, achieving and maintaining maximal infiltration of cement into the bone to obtain large interdigitation and contact area is key to optimizing the interfacial strength.     

Molecular Basis for Barbed End Uncapping by CARMIL Homology Domain 3 of Mouse CARMIL-1

Capping protein (CP) is a ubiquitously expressed, 62-kDa heterodimer that binds the barbed end of the actin filament with ∼0.1 nm affinity to prevent further monomer addition. CARMIL is a multidomain protein, present from protozoa to mammals, that binds CP and is important for normal actin dynamics in vivo. The CARMIL CP binding site resides in its CAH3 domain (CARMIL homology domain 3) located at or near the protein''s C terminus. CAH3 binds CP with ∼1 nm affinity, resulting in a complex with weak capping activity (30–200 nm). Solution assays and single-molecule imaging show that CAH3 binds CP already present on the barbed end, causing a 300-fold increase in the dissociation rate of CP from the end (i.e. uncapping). Here we used nuclear magnetic resonance (NMR) to define the molecular interaction between the minimal CAH3 domain (CAH3a/b) of mouse CARMIL-1 and CP. Specifically, we show that the highly basic CAH3a subdomain is required for the high affinity interaction of CAH3 with a complementary “acidic groove” on CP opposite its actin-binding surface. This CAH3a-CP interaction orients the CAH3b subdomain, which we show is also required for potent anti-CP activity, directly adjacent to the basic patch of CP, shown previously to be required for CP association to and high affinity interaction with the barbed end. The importance of specific residue interactions between CP and CAH3a/b was confirmed by site-directed mutagenesis of both proteins. Together, these results offer a mechanistic explanation for the barbed end uncapping activity of CARMIL, and they identify the basic patch on CP as a crucial regulatory site.     

Structural Basis for Capping Protein Sequestration by Myotrophin (V-1)

Capping protein (CP) is a ubiquitously expressed, heterodimeric 62-kDa protein that binds the barbed end of the actin filament with high affinity to block further filament elongation. Myotrophin (V-1) is a 13-kDa ankyrin repeat-containing protein that binds CP tightly, sequestering it in a totally inactive complex in vitro. Here, we elucidate the molecular interaction between CP and V-1 by NMR. Specifically, chemical shift mapping and intermolecular paramagnetic relaxation enhancement experiments reveal that the ankyrin loops of V-1, which are essential for V-1/CP interaction, bind the basic patch near the joint of the α tentacle of CP shown previously to drive most of the association of CP with and affinity for the barbed end. Consistently, site-directed mutagenesis of CP shows that V-1 and the strong electrostatic binding site for CP on the barbed end compete for this basic patch on CP. These results can explain how V-1 inactivates barbed end capping by CP and why V-1 is incapable of uncapping CP-capped actin filaments, the two signature biochemical activities of V-1.     

Pollinator diversity and specialization in relation to flower diversity

In the face of global decline in biodiversity, the relationship between diversity and species interactions deserves particular attention. If pollinators are strongly dependent on floral diversity due to mutual specialization, declines in plant diversity, e.g. caused by land use intensification, may be associated with linked extinctions of pollinators. However, the general extent of pollinator specialization is still poorly known. To explore the dependence of local bee and hoverfly communities on flower diversity, we recorded flower supply and flower‐visiting insects on 27 meadows with varying flower diversity in southern Germany and analyzed (a) whether the diversity of flower visitors is correlated with flower diversity, (b) whether the degree of dietary specialization of flower visitors changes with flower diversity and (c) whether flower preferences of individual flower visitor species are constant or variable between different communities. Flower–visitor interaction webs were compiled during a single day on each meadow. This approach prevents relating pollinator species to flowers they never encounter because of non‐overlapping phenology or spatial segregation. (a) Flower diversity and flower visitor diversity were positively correlated. (b) Flower visitor assemblies were significantly specialized at a relatively high level, contrasting to the opinion that plant–pollinator webs are highly generalized, and providing a possible explanation for the positive diversity correlation. However, the level of specialization did not change significantly across the gradient of flower diversity, suggesting that pollinators are partitioned to a similar extent in each meadow. (c) In the analysis of ten common flower visitor species previously categorized as generalists, strong evidence was found for both, consistent preferences and preferences that differ between sites. These results indicate a flexibility in flower preferences and a dynamic resource partitioning among pollinators. Generally, our findings highlight the complexity of plant–pollinator interactions and confirm the importance of flower diversity for bee and hoverfly communities.     

Attenuation of Post-Shock Increases in Brain Natriuretic Peptide with Post Shock Overdrive Pacing

Background

Predischarge defibrillation threshold testing is often performed a few days after ICD implantation in order to validate defibrillation thresholds obtained at the time of implant. Ventricular fibrillation is induced with such testing and causes an increase in serum Brain Natriuretic Peptide (BNP) levels. BNP is an indicator for cardiac stress. We wanted to examine the feasibility to alter the trend of BNP after predischarge testing in VVI, DDD and CRT ICD''s.

Methods

We measured BNP before predischarge testing and 5, 10, 20 and 40 minutes after predischarge testing in 13 groups with each 20 patients. We evaluated patients without post shock pacing and patients with a post shock pacing frequency of 60, 70, 80, 90 and 100 bpm and a duration of 30 and 60 sec as well as a post shock pacing frequency of 80 and 90 bpm and a duration of 120 sec post shock pacing.

Results

Patients without post shock pacing showed the highest BNP during the follow-up. The percentage values of BNP increased consistent significantly after 5 minutes compared with BNP before predischarge testing. The percentage values of BNP trend was significantly lower with a post shock pacing of 90 bpm and duration of 60 sec. In addition, we excluded a cardiac necrosis by predischarge testing because of similar values of myoglobin, cardiac troponin I and creatine kinase during the follow-up.

Conclusions

Our results suggested that post shock pacing with 90 bpm and duration of 60 sec as the best optimized post shock pacing frequency and duration for VVI, DDD and CRT ICD''s. A reduction of cardiac stress is going to be achieved with the optimization of the post shock pacing frequency and duration.     

Functional analysis of F508del CFTR in native human colon

The major cystic fibrosis mutation F508del has been classified by experiments in animal and cell culture models as a temperature-sensitive mutant defective in protein folding, processing and trafficking, but literature data on F508del CFTR maturation and function in human tissue are inconsistent. In the present study the molecular pathology of F508del CFTR was characterized in freshly excised rectal mucosa by bioelectric measurement of the basic defect and CFTR protein analysis by metabolic labelling or immunoblot. The majority of investigated F508del homozygous subjects expressed low amounts of complex-glycosylated mature F508del CFTR and low residual F508del CFTR-mediated chloride secretory activity in the rectal mucosa. The finding that some F508del CFTR escapes the ER quality control in vivo substantiates the hope that the defective processing and trafficking of F508del CFTR can be corrected by pharmacological agents.