Anchoring of bovine chromosomes 4, 6, 7, 10, and 14 linkage group telomeric ends via FISH analysis of lambda clones

We report the placement of 34 new microsatellite (ms) markers, isolated from a lambda phage genomic clone library, on the bovine genetic map by linkage to published markers. Five of these markers lie at or near the ends of linkage groups and are used to establish chromosomal coverage and orientation. Fluorescence in situ hybridization (FISH) analysis demonstrates that the linkage groups on the U.S. Meat Animal Research Center (MARC) map extend to the telomeric region of Chromosomes (Chrs) 7 and 10. Linkage groups on Chrs 4, 6, and 14 appear to be less inclusive. Received: 23 September 1996 / Accepted: 28 December 1996     

Solution conformation of Monensin free acid,a typical representative of the polyetherin antibiotics

The solution conformation of the ionophore Monensin in its free-acid form bears a close resemblance to that of its Na⁺ salt. The backbone is folded into a closed loop, and the pseudocyclic structure is shut by head-to-tail H bonding between the carboxylic function and the alcoholic functions of the last six-membered ring with the mediation of a water molecule. A mode of trapping is proposed and compared to features observed in some other membrane-active complexones.     

Comparative studies on the hypotensive effect of LHRH antagonists in anesthetized rats

Certain neuropeptides are known to cause a hypotensive response, thought to be due to mast cell degranulation. The effects of five antagonists of luteinizing hormone-releasing hormone on blood pressure and heart rate were compared in the anesthetized rat. When given intravenously, all five compounds induced hypotensive and bradycardiac effects. The order of potency for these effects was Nal-Arg Antagonist approximately detirelix [( N-Ac-D-Nal(2)1, D-pCl-Phe2,D-Trp3,D-hArg(Et2)6,D-Ala10]LHRH) greater than [N-Ac-D-Nal(2)1, D-pCl-Phe2,D-Pal(3)3,D-hArg(Et2)6,L-hArg (Et2)8,D-Ala10]LHRH (RS-26306) approximately antide greater than [N-Ac-D-Nal(2)1, D-pCl-Phe2,D-Pal(3)3,6, L-hArg(Et2)8,D-Ala10]LHRH (RS-15378) and did not parallel the order of antiovulatory potencies of these compounds. The hypotensive activity of LHRH antagonists, therefore, appeared dissociable from their antiovulatory activity. RS-26306 and RS-15378 appeared to have the greatest therapeutic ratios.     

Substituted benzothiadizine inhibitors of Hepatitis C virus polymerase

The synthesis and optimisation of HCV NS5B polymerase inhibitors with improved potency versus the existing compound 1 is described. Substitution in the benzothiadiazine portion of the molecule, furnishing improvement in potency in the high protein Replicon assay, is highlighted, culminating in the discovery of 12h, a highly potent oxyacetamide derivative.     

Metabolic Engineering with power-law and linear-logarithmic systems

Metabolic Engineering aims to improve the performance of biotechnological processes through rational manipulation rather than random mutagenesis of the organisms involved. Such a strategy can only succeed when a mathematical model of the target process is available. Simplifying assumptions are often needed to cope with the complexity of such models in an efficient way, and the choice of such assumptions often leads to models that fall within a certain structural template or formalism. The most popular formalisms can be grouped in two categories: power-law and linear-logarithmic. As optimization and analysis of a model strongly depends on its structure, most methods in Metabolic Engineering have been defined within a given formalism and never used in any other.In this work, the four most commonly used formalisms (two power-law and two linear-logarithmic) are placed in a common framework defined within Biochemical Systems Theory. This framework defines every model as matrix equations in terms of the same parameters, enabling the formulation of a common steady state analysis and providing means for translating models and methods from one formalism to another. Several Metabolic Engineering methods are analysed here and shown to be variants of a single equation. Particularly, two problem solving philosophies are compared: the application of the design equation and the solution of constrained optimization problems. Generalizing the design equation to all the formalisms shows it to be interchangeable with the direct solution of the rate law in matrix form. Furthermore, optimization approaches are concluded to be preferable since they speed the exploration of the feasible space, implement a better specification of the problem and exclude unrealistic results.Beyond consolidating existing knowledge and enabling comparison, the systematic approach adopted here can fill the gaps between the different methods and combine their strengths.     

The F1 motif of dengue virus polymerase NS5 is involved in promoter-dependent RNA synthesis

The mechanism by which viral RNA-dependent RNA polymerases (RdRp) specifically amplify viral genomes is still unclear. In the case of flaviviruses, a model has been proposed that involves the recognition of an RNA element present at the viral 5' untranslated region, stem-loop A (SLA), that serves as a promoter for NS5 polymerase binding and activity. Here, we investigated requirements for specific promoter-dependent RNA synthesis of the dengue virus NS5 protein. Using mutated purified NS5 recombinant proteins and infectious viral RNAs, we analyzed the requirement of specific amino acids of the RdRp domain on polymerase activity and viral replication. A battery of 19 mutants was designed and analyzed. By measuring polymerase activity using nonspecific poly(rC) templates or specific viral RNA molecules, we identified four mutants with impaired polymerase activity. Viral full-length RNAs carrying these mutations were found to be unable to replicate in cell culture. Interestingly, one recombinant NS5 protein carrying the mutations K456A and K457A located in the F1 motif lacked RNA synthesis dependent on the SLA promoter but displayed high activity using a poly(rC) template. Promoter RNA binding of this NS5 mutant was unaffected while de novo RNA synthesis was abolished. Furthermore, the mutant maintained RNA elongation activity, indicating a role of the F1 region in promoter-dependent initiation. In addition, four NS5 mutants were selected to have polymerase activity in the recombinant protein but delayed or impaired virus replication when introduced into an infectious clone, suggesting a role of these amino acids in other functions of NS5. This work provides new molecular insights on the specific RNA synthesis activity of the dengue virus NS5 polymerase.     

Seabird ticks (Ixodes uriae) distribution along the Antarctic Peninsula

The distribution of the tick Ixodes uriae is studied in the South Shetlands and different locations along the Antarctic Peninsula. Ticks were found beneath stones close to penguin rookeries of chinstrap, gentoo and adelie penguin, although no individuals were found parasitized. Our results showed that ticks are not distributed evenly along the Antarctic Peninsula being more common and abundant in the northern part with relative abundances of ticks ranging from 1 to 57 individuals per stone and from 2 to 26% of the stone inspected. Ticks are probably absent in the south.