The MTL1 Pentatricopeptide Repeat Protein Is Required for Both Translation and Splicing of the Mitochondrial NADH DEHYDROGENASE SUBUNIT7 mRNA in Arabidopsis

Mitochondrial translation involves a complex interplay of ancient bacteria-like features and host-derived functionalities. Although the basic components of the mitochondrial translation apparatus have been recognized, very few protein factors aiding in recruiting ribosomes on mitochondria-encoded messenger RNA (mRNAs) have been identified in higher plants. In this study, we describe the identification of the Arabidopsis (Arabidopsis thaliana) MITOCHONDRIAL TRANSLATION FACTOR1 (MTL1) protein, a new member of the Pentatricopeptide Repeat family, and show that it is essential for the translation of the mitochondrial NADH dehydrogenase subunit7 (nad7) mRNA. We demonstrate that mtl1 mutant plants fail to accumulate the Nad7 protein, even though the nad7 mature mRNA is produced and bears the same 5′ and 3′ extremities as in wild-type plants. We next observed that polysome association of nad7 mature mRNA is specifically disrupted in mtl1 mutants, indicating that the absence of Nad7 results from a lack of translation of nad7 mRNA. These findings illustrate that mitochondrial translation requires the intervention of gene-specific nucleus-encoded PPR trans-factors and that their action does not necessarily involve the 5′ processing of their target mRNA, as observed previously. Interestingly, a partial decrease in nad7 intron 2 splicing was also detected in mtl1 mutants, suggesting that MTL1 is also involved in group II intron splicing. However, this second function appears to be less essential for nad7 expression than its role in translation. MTL1 will be instrumental to understand the multifunctionality of PPR proteins and the mechanisms governing mRNA translation and intron splicing in plant mitochondria.Translation is the fundamental process decoding the genetic message present on mRNAs into proteins. In plant cells, mRNA translation occurs in the cytoplasm but also in two organelles, mitochondria and plastids. Because of their prokaryotic origin, the translation machineries operating in these two organelles share many characteristics with the bacterial translation apparatus (Bonen, 2004; Barkan, 2011). However, most of these bacteria-like features have been modified throughout evolution, and current organellar translation systems cooperate with numerous nucleus-encoded eukaryotic trans-factors. The divergence from bacteria is particularly obvious in plant mitochondria, notably because mitochondrial mRNAs lack the typical Shine and Dalgarno (SD) motif in their 5′ leaders and alternative start codons other than AUG are often used to initiate translation (Bonen, 2004). Proteomic and bioinformatic analyses allowed the identification of most proteins and RNA factors forming the core of the plant mitochondrial translation machinery, including translation initiation and elongation factors as well as ribosomal proteins (Bonen, 2004; Bonen and Calixte, 2006). However, the dynamics of this machinery remains largely obscure. In particular, nothing is known about the recruitment of mitochondrial ribosomes on 5′ untranslated regions in the absence of the SD motif and about the recognition of the correct translation initiation codon by the small ribosomal subunit. The high degree of sequence divergence among 5′ leaders of mitochondrial genes suggests a ribosome recruitment mechanism involving gene-specific cis-sequences and trans-factors (Hazle and Bonen, 2007; Choi et al., 2012). Up to now, only two proteins belonging to the Pentatricopeptide Repeat (PPR) family have been found to promote mitochondrial translation in higher plants (Uyttewaal et al., 2008b; Manavski et al., 2012). How they facilitate translation is still unclear, as for the few characterized PPR proteins shown to participate in plastid translation (Fisk et al., 1999; Schmitz-Linneweber et al., 2005; Cai et al., 2011; Zoschke et al., 2012, 2013). The plastid PENTATRICOPEPTIDE REPEAT PROTEIN10 (PPR10) protein of maize (Zea mays) is the only one for which the function has been elucidated at the molecular level. It was shown that, upon binding, PPR10 impedes the formation of a stem-loop structure in the 5′ leader of the ATP synthase subunit c (atpH) mRNA, permitting the recruitment of ribosomes through the liberation of an SD motif (Prikryl et al., 2011).PPR proteins represent a large family of RNA-binding proteins that has massively expanded in terrestrial plants (Barkan and Small, 2014). Most eukaryotes encode a handful of these proteins, whereas plant nuclear genomes express over 400 PPR proteins that are almost exclusively predicted to target mitochondria and/or plastids (Lurin et al., 2004; O’Toole et al., 2008). This family of proteins is characterized by the succession of tandem degenerate motifs of approximately 35 amino acids (Small and Peeters, 2000; Lurin et al., 2004). Based on the length of these repeats, the PPR family has been divided into two groups of roughly equal size in higher plants. P-type PPR proteins contain only successions of canonical 35-amino acid repeats (P), whereas PLS PPR proteins are composed of sequential repeats of P, short (S), and long (L) PPR motifs. P-type PPR proteins were shown to participate in various aspects of organellar RNA processing, whereas PLS PPR proteins have been almost exclusively associated with C-to-U RNA editing (for review, see Barkan and Small, 2014; Hammani and Giegé, 2014). Recent crystal structures showed that PPR motifs adopt an antiparallel helix-turn-helix fold whose repetition forms a solenoid-like structure (Ringel et al., 2011; Howard et al., 2012; Ban et al., 2013; Yin et al., 2013; Coquille et al., 2014; Gully et al., 2015). PPR tracks organize highly specific interaction domains that were shown to associate with single-stranded RNAs (Schmitz-Linneweber et al., 2005; Beick et al., 2008; Uyttewaal et al., 2008a; Williams-Carrier et al., 2008; Pfalz et al., 2009; Cai et al., 2011; Hammani et al., 2011; Prikryl et al., 2011; Khrouchtchova et al., 2012; Manavski et al., 2012; Zhelyazkova et al., 2012; Ke et al., 2013; Yin et al., 2013). The mechanism of sequence-specific RNA recognition by PPR proteins was recently uncovered, and combinations involving amino acid 6 of one motif and amino acid 1 of the subsequent motif correlate strongly with the identity of the RNA base to be bound (Barkan et al., 2012; Takenaka et al., 2013; Yagi et al., 2013).Besides those involved in RNA editing, few mitochondria-targeted PPR proteins have been characterized to date. Thus, our knowledge of the mechanisms governing the production and the expression of mitochondrial RNAs in higher plants is very limited. In this analysis, we describe the function of a novel mitochondria-targeted PPR protein of Arabidopsis (Arabidopsis thaliana) called MITOCHONDRIAL TRANSLATION FACTOR1 (MTL1). Genetic and biochemical analyses indicate that MTL1 is essential for the translation of the mitochondrial NADH dehydrogenase subunit7 (nad7) mRNA. Effectively, the Nad7 protein does not accumulate to detectable levels in mtl1 mutants, and this absence correlates with a lack of association of nad7 mature mRNA with mitochondrial polysomes. Interestingly, a partial but significant decrease in nad7 intron 2 splicing was also detected in mtl1 mutants, suggesting that the MTL1 protein is also involved in group II intron splicing. Since the decrease in splicing was only partial, this second function of MTL1 appears less essential for nad7 expression than its role in translation.     

The changes in mycolic acid structures caused by hadC mutation have a dramatic effect on the virulence of Mycobacterium tuberculosis

Understanding the molecular strategies used by Mycobacterium tuberculosis to invade and persist within the host is of paramount importance to tackle the tuberculosis pandemic. Comparative genomic surveys have revealed that hadC, encoding a subunit of the HadBC dehydratase, is mutated in the avirulent M. tuberculosis H37Ra strain. We show here that mutation or deletion of hadC affects the biosynthesis of oxygenated mycolic acids, substantially reducing their production level. Additionally, it causes the loss of atypical extra‐long mycolic acids, demonstrating the involvement of HadBC in the late elongation steps of mycolic acid biosynthesis. These events have an impact on the morphotype, cording capacity and biofilm growth of the bacilli as well as on their sensitivity to agents such as rifampicin. Furthermore, deletion of hadC leads to a dramatic loss of virulence: an almost 4‐log drop of the bacterial load in the lungs and spleens of infected immunodeficient mice. Both its unique function and importance for M. tuberculosis virulence make HadBC an attractive therapeutic target for tuberculosis drug development.     

Relationship Between Phenotypic and Genotypic Characteristics of <Emphasis Type="Italic">Trichophyton mentagrophytes</Emphasis> Strains Isolated from Patients with Dermatophytosis

According to epidemiological, clinical and mycological criteria, it has long been admitted that the Trichophyton mentagrophytes species includes two varieties: a zoophilic variety (var. mentagrophytes) and an anthropophilic variety (var. interdigitale) that involve the upper and the lower part of the body, respectively. The further application of molecular techniques to the characterization of dermatophyte strains showed that this classification is unreliable. The aim of our study was to assess the usefulness of PCR–RFLP (restriction fragment length polymorphism) and sequencing in the characterization of T. mentagrophytes strains taken from Tunisian patients. The study was carried out in 2008 in the laboratory of Parasitology–Mycology of Farhat Hached University Hospital, Sousse, Tunisia. A total of 133 strains were isolated from 133 patients addressed to the laboratory for dermatological lesions very evocative of dermatomycosis. Eighty strains were isolated from lesions located on the lower part of the body (onychomycosis, tinea pedis) and 53 strains from the upper part of the body (tinea capitis, tinea corporis). All strains were submitted to mycological examination (direct microscopic examination and culture on Sabouraud medium) and further investigated by using RFLP analysis of the PCR-amplified ITS1-5.8 s-ITS2 region of the ribosomal DNA and the MvaI restriction enzyme. In addition, 62 strains were further submitted to a sequencing of the ITS1-5.8 s-ITS2 region. On the basis of mycological criteria, all strains were diagnosed as T. mentagrophytes. All strains produced the same RFLP pattern and were identified as T. mentagrophytes interdigitale regardless of the location of lesions. Out of the 62 sequenced strains, 16 were found anthropophilic and 46 were zoophilic. In conclusion, all strains provisionally diagnosed as T. mentagrophytes on the basis of mycological criteria were shown to belong to T. interdigitale by using PCR–RFLP and sequencing irrespective of the site of lesions. The predominance of zoophilic strains needs further investigation.     

Effects of water deficit stress on growth,water relations and osmolyte accumulation in Medicago truncatula and M. laciniata populations

The effects of water stress were investigated in two Tunisian Medicago truncatula populations collected from arid (Mt-173) and sub-humid (Mt-664) climates and two Tunisian M. laciniata populations originating from arid (Ml-173) and semi-arid (Ml-345) regions. After a pre-treatment phase (24 days after sowing, DAS) of watering at 100% of field capacity (FC), the plants were either irrigated at 100% FC or at only 33% FC. After 12 days of treatment (36 DAS), one lot of dehydrated plants was rewatered at 100% FC. A final harvest was carried out after 24 days of treatment (48 DAS). Measured parameters were total dry weight (TDW), root shoot ratio (RSR), leaf relative water content (RWC), osmotic potential (OP), photosynthetic parameters (CO₂ net assimilation A, stomatal conductance g_s and transpiration E), malondialdehyde (MDA) concentration and leaf contents in inorganic (Na⁺ and K⁺) and organic solutes (proline and soluble sugars). Under water deficit conditions, compared to M. laciniata, M. truncatula populations showed a higher reduction in TDW, A, g_s and RWC associated with a higher increase in MDA concentration. Thus, the relative tolerance of M. laciniata populations to water shortage would be related to their lower intrinsic growth rate and stomatal control of gas exchange. TDW, A, g_s, E and RWC were more decreased by water deficit in Ml-345 than in Ml-173. Drought tolerance of Ml-173 was found to be associated with a more pronounced decrease of OP and a lower reduction in RWC due to the accumulation of solutes such as proline, soluble sugars and K⁺. In addition, Ml-173 showed the highest water use efficiency values (WUE) and the lowest MDA concentrations under water deficit stress.     

In vitro increase of the fluid-phase endocytosis induced by pulsed radiofrequency electromagnetic fields: importance of the electric field component

Nowadays, due to the wide use of mobile phones, the possible biological effects of electromagnetic fields (EMF) become a public health general concern. Despite intensive research, there are no widely accepted theories about the interactions between EMFs and living cells, and the experimental data are often controversial. We examined the effects of mobile phones EMF (envelope frequency of 217 Hz, carrier frequency of 900 MHz and pulse duration of 580 μs) or its pure, low-frequency pulsed electric field component on fluid-phase endocytosis. In both cases, with exposures exceeding 10 min, an increase of the fluid-phase endocytosis rate was observed (≈1.5-fold), on three different cell types. This increase is an all-or-nothing type of response that is occurring for threshold values comprised between 1.3 and 2.6 W/kg for the delivered EMF powers and between 1.1 and 1.5 V/cm for the electric fields intensities depending upon the cell type. The electric component of these EMFs is shown to be responsible for the observed increase. Variations of frequency or pulse duration of the electric pulses are shown to be without effect. Thus, EMF, via their electrical component, can perturb one of the most fundamental physiological functions of the cells—endocytosis.     

Negative regulation by Ser/Thr phosphorylation of HadAB and HadBC dehydratases from Mycobacterium tuberculosis type II fatty acid synthase system

The type II fatty acid synthase system of mycobacteria is involved in the biosynthesis of major and essential lipids, mycolic acids, key-factors of Mycobacterium tuberculosis pathogenicity. One reason of the remarkable survival ability of M. tuberculosis in infected hosts is partly related to the presence of cell wall-associated mycolic acids. Despite their importance, the mechanisms that modulate synthesis of these lipids in response to environmental changes are unknown. We demonstrate here that HadAB and HadBC dehydratases of this system are phosphorylated by Ser/Thr protein kinases, which negatively affects their enzymatic activity. The phosphorylation of HadAB/BC is growth phase-dependent, suggesting that it represents a mechanism by which mycobacteria might tightly control mycolic acid biosynthesis under non-replicating condition.     

Mutations in CYC1, Encoding Cytochrome c1 Subunit of Respiratory Chain Complex III,Cause Insulin-Responsive Hyperglycemia

Many individuals with abnormalities of mitochondrial respiratory chain complex III remain genetically undefined. Here, we report mutations (c.288G>T [p.Trp96Cys] and c.643C>T [p.Leu215Phe]) in CYC1, encoding the cytochrome c₁ subunit of complex III, in two unrelated children presenting with recurrent episodes of ketoacidosis and insulin-responsive hyperglycemia. Cytochrome c₁, the heme-containing component of complex III, mediates the transfer of electrons from the Rieske iron-sulfur protein to cytochrome c. Cytochrome c₁ is present at reduced levels in the skeletal muscle and skin fibroblasts of affected individuals. Moreover, studies on yeast mutants and affected individuals’ fibroblasts have shown that exogenous expression of wild-type CYC1 rescues complex III activity, demonstrating the deleterious effect of each mutation on cytochrome c₁ stability and complex III activity.     

Melatonin ingestion after exhaustive late-evening exercise improves sleep quality and quantity,and short-term performances in teenage athletes

ABSTRACT

The present study aimed to explore the effects of a single 10-mg dose of melatonin (MEL) administration after exhaustive late-evening exercise on sleep quality and quantity, and short-term physical and cognitive performances in healthy teenagers. Ten male adolescent athletes (mean ± SD, age = 15.4 ± 0.3 years, body-mass = 60.68 ± 5.7 kg, height = 167.9 ± 6.9 cm and BMI = 21.21 ± 2.5) performed two test sessions separated by at least one week. During each session, participants completed the Yo-Yo intermittent-recovery-test level-1 (YYIRT-1) at ~20:00 h. Then, sleep polysomnography was recorded from 22:15 min to 07:00 h, after a double blind randomized order administration of a single 10-mg tablet of MEL (MEL-10 mg) or Placebo (PLA). The following morning, Hooper wellness index was administered and the participants performed the Choice Reaction Time (CRT) test, the Zazzo test and some short-term physical exercises (YYIRT-1, vertical and horizontal Jumps (VJ; HJ), Hand grip strength (HG), and five-jump test (5-JT)). Evening total distance covered in the YYIRT-1 did not change during the two conditions (p > 0.05). Total sleep time (Δ = 24.55 mn; p < 0.001), sleep efficiency (Δ = 4.47%; p < 0.001), stage-3 sleep (N3 sleep) (Δ = 1.73%; p < 0.05) and rapid-eye-movement sleep (Δ = 2.15%; p < 0.001) were significantly higher with MEL in comparison with PLA. Moreover, sleep-onset-latency (Δ = –8.45mn; p < 0.001), total time of nocturnal awakenings after sleep-onset (NA) (Δ = –11 mn; p < 0.001), stage-1 sleep (N1 sleep) (Δ = –1.7%; p < 0.001) and stage-2 sleep (N2 sleep) (Δ = ?1.9%; p < 0.05) durations were lower with MEL. The Hooper index showed a better subjective sleep quality, a decrease of the subjective perception of fatigue and a reduced level of muscle soreness with MEL. Moreover, MEL improved speed and performance but not inaccuracy during the Zazzo test. CRT was faster with MEL. Morning YYIRT-1 (Δ = 82 m; p < 0.001) and 5-JT (Δ = 0.08 m; p < 0.05) performances were significantly higher with MEL in comparison with PLA. In contrast, HG, VJ and HJ performances did not change during the two conditions (p > 0.05). The administration of a single dose of MEL-10 mg after strenuous late-evening exercise improved sleep quality and quantity, selective attention, subjective assessment of the general wellness state, and some short-term physical performances the following morning in healthy teenagers.