Molecular perspective on the American transisthmian species of Macrobrachium (Caridea,Palaemonidae)

The closure of the Isthmus of Panama (about 3.1 million years ago) separated previously continuous populations and created two groups of extant species, which live now in the Pacific and Atlantic drainage systems. This relatively recent event was a trigger to diversification of various species in the Neotropics, nonetheless there are exemplars that do not show sufficient morphologic variability to separate them by traditional morphological tools. About 60 years ago, some freshwater decapod species with high morphological similarity were separate by previous researchers, based on geographical distribution, in Pacific and Atlantic and considered as “sister species”. However, the complete isolation of these prawns by this geographical barrier is questionable, and it has generated doubts about the status of the following transisthmian pairs of sibling species: Macrobrachium occidentale × Macrobrachium heterochirus, Macrobrachium americanum × Macrobrachium carcinus, Macrobrachium digueti × Macrobrachium olfersii, Macrobrachium hancocki × Macrobrachium crenulatum, Macrobrachium tenellum × Macrobrachium acanthurus and Macrobrachium panamense × Macrobrachium amazonicum. Here we evaluated the relation among these pairs of sibling species in a molecular phylogenetic context. We generated 95 new sequences: 26 sequences of 16S rDNA, 25 of COI mtDNA and 44 of 18S nDNA. In total, 181 sequences were analyzed by maximum likelihood phylogenetic method, including 12 Macrobrachium transisthmian species, as well as seven other American Macrobrachium species, and two other palaemonids. Our analysis corroborated the morphological proximity of the sibling species. Despite the high degree of morphological similarities and considerable genetic diversification encountered among the transisthmian sister species, our data support the conclusion that all species included in sibling groups studied herein are valid taxonomic entities, but not all pairs of siblings form natural groups.     

Methane emission from tidal freshwater marshes

In two tidal freshwater marshes, methane emission,production and accumulation in the pore-water have beenstudied. The two sites differ in their dominantvegetation, i.e., reed and bulrush, and in theirheights above sea level. The reed site was elevated inrelation to the bulrush site and had higher rates ofmethane emission and production. It is argued thatthis difference in methane emission between sites wasprimarily due to a different effect of reed andbulrush plants on methane dynamics rather than methaneoxidation related to tidal elevation. Methane emissionshowed strong seasonality related primarily to plantphysiology and only secondarily to temperature. Twocontrol sites at which vegetation was removedsystematically had lower emission rates indicating anoverall stimulating effect of plants on methaneemission from tidal marshes. Flooding reduced methaneemission, probably by blocking the primary sites ofmethane release in the lower part of the plantstems.     

Peptidylarginine deiminase 4 concentration,but not PADI4 polymorphisms,is associated with ICU mortality in septic shock patients

The objective of our study was to evaluate the association between peptidylarginine deiminase 4 (PAD4) concentration and its polymorphisms with mortality in patients with septic shock . We prospectively evaluated 175 patients aged over 18 years with septic shock upon intensive care unit (ICU) admission. However, 48 patients were excluded. Thus, 127 patients were enrolled in the study. At the time of the patients’ enrollment, demographic information was recorded. Blood samples were taken within the first 24 hours of the patient's admission to determine serum PAD4 concentrations and its polymorphism PADI4_89 [rs11203366], PADI4_94 [rs2240340] and PADI4_104 [rs1748033]. The mean age was 63.3 ± 15.2 years, 56.7% were male, PAD4 concentration was 4.62 (2.48‐6.20) ng/mL and the ICU mortality rate was 67.7%. The patients who died in the ICU had higher APACHE II and Sequential Organ Failure Assessment (SOFA) scores. In addition, PAD4 concentration was higher in patients who died during ICU stay. However, there were no differences regarding PADI4 polymorphisms and ICU mortality. In the logistic regression models, PAD4 concentrations were associated with ICU mortality when adjusted for APACHE II score and lactate (OR: 1.477; CI 95%: 1.186‐1.839; P < .001), and when adjusted for age, gender and APACHE II score (OR: 1.392; CI 95%: 1.145‐1.692; P < .001). In conclusion, PAD4 concentration, but not PADI4_89, PADI4_94 and PADI4_104 polymorphisms, is associated with ICU mortality in septic shock patients.     

Projecting potential future shifts in species composition of European urban plant communities

Aim

Urban floras are composed of species of different origin, both native and alien, and with various traits and niches. It is likely that these species will respond to the ongoing climate change in different ways, resulting in future species compositions with no analogues in current European cities. Our goal was to estimate potential shifts in plant species composition in European cities under different scenarios of climate change for the 21st century.

Location

Europe.

Methods

Potential changes in the distribution of 375 species currently growing in 60 large cities in Southern, Central and Western Europe were modelled using generalized linear models and four climate change projections for two future periods (2041–2060 and 2061–2080). These projections were based on two global climate models (CCSM4 and MIROC‐ESM) and two Representative Concentration Pathways (2.6 and 8.5).

Results

Results were similar across all climate projections, suggesting that the composition of urban plant communities will change considerably due to future climate change. However, even under the most severe climate change scenario, native and alien species will respond to climate change similarly. Many currently established species will decline and others, especially annuals currently restricted to Southern Europe, will spread to northern cities. In contrast, perennial herbs, woody plants and most species with temperate continental and oceanic distribution ranges will make up a smaller proportion of future European urban plant communities in comparison with the present communities.

Main conclusions

The projected 21st century climate change will lead to considerable changes in the species composition of urban floras. These changes will affect the structure and functioning of urban plant communities.

     

Cumulative ecological effects of a Neotropical reservoir cascade across multiple assemblages

Kettle holes are often abundant within agriculturally used moraine landscapes. They are highly enriched with nutrients and considered hotspots of carbon turnover. However, data on their primary productivity remain rare. We analysed two kettle holes typical to Germany with common aquatic plant communities during one year. We hypothesised that gross primary production (GPP) rates would be high compared to other temperate freshwater ecosystems, leading to high sediment deposition. Summer GPP rates (4.5–5.1 g C m^?2 day^?1) were higher than those of most temperate freshwater systems, but GPP rates were reduced by 90% in winter. Macrophytes dominated GPP from May to September with emergent macrophytes accounting for half of the GPP. Periphyton contributed to most of the system GPP throughout the rest of the year. Sediment deposition rates were high and correlated with GPP in one kettle hole. In contrast, due to prolonged periods of anoxia, aerobic sediment mineralisation was low while sediment phosphorus release was significant. Our results suggest that kettle holes have a high potential for carbon burial, provided they do not fully dry up during warm years. Due to their unique features, they should not be automatically grouped with ponds and shallow lakes in global carbon budget estimates.     

Similarities in correlates of native and introduced fish species richness distribution in Brazilian reservoirs

We assessed the relationships among native and introduced fish species richness and a set of explanatory variables, including area, altitude, reservoir age, temperature, human influence index and fish abundance. We expected to find different relationships based on species origin (i.e., native or introduced). Based on compiled data from Brazilian reservoirs, we modeled the variation in the number of native and introduced fish species by generalized linear mixed models with different spatial autocorrelation structures. Reservoirs located in warmer regions and with higher fish abundance showed higher species richness of both native and introduced fish. Reservoir age tended to be negatively correlated with native species richness. Our results suggest that reservoir communities in warmer regions may be more resistant to local extinctions caused by impoundments, but they are more susceptible to species introductions. Our results also highlight that an extinction debt can be expected for native species because older reservoirs showed lower native species richness.     

Expression pattern of <Emphasis Type="Italic">cdkl5</Emphasis> during zebrafish early development: implications for use as model for atypical Rett syndrome

Atypical Rett syndrome is a child neurodevelopmental disorder induced by mutations in CDKL5 gene and characterized by a progressive regression in development with loss of purposeful use of the hands, slowed brain and head growth, problems with walking, seizures, and intellectual disability. At the moment, there is no cure for this pathology and little information is available concerning animal models capable of mimicking its phenotypes, thus the development of additional animal models should be of interest to gain more knowledge about the disease. Zebrafish has been used successfully as model organism for many human genetic diseases; however, no information is available concerning the spatial and temporal expression of cdkl5 orthologous in this organism. In the present study, we identified the developmental expression patterns of cdkl5 in zebrafish by quantitative PCR and whole-mount in situ hybridization. cdkl5 is expressed maternally at low levels during the first 24 h of development. After that the expression of the gene increases significantly and it starts to be expressed mainly in the nervous system and in several brain structures, such as telencephalon, mesencephalon and diencephalon. The expression patterns of cdkl5 in zebrafish is in accordance with the tissues known to be affected in humans and associated to symptoms and deficits observed in Rett syndrome patients thus providing the first evidence that zebrafish could be an alternative model to study the molecular pathways of this disease as well as to test possible therapeutic approaches capable of rescuing the phenotype.     

Rapid selection and characterization of Cry1F resistance in a Brazilian strain of fall armyworm

Transgenic maize (Zea mays L., Poaceae) event TC1507, producing the Cry1F protein of Bacillus thuringiensis Berliner, has been used for management of the fall armyworm, Spodoptera frugiperda (JE Smith) (Lepidoptera: Noctuidae), in Brazil since 2009. A strain of S. frugiperda, obtained from field collections of larvae in TC1507 maize in Minas Gerais state in 2010, was selected in the laboratory for resistance to Cry1F using leaves of TC1507 maize in two selection regimes. Continuous exposure of larvae to Cry1F was more effective than exposure for 6, 8, and 10 days in the selection of resistant S. frugiperda individuals. With only four generations of laboratory selection, a strain with high levels of resistance to Cry1F was obtained, as indicated by the survival of insects reared on leaves of TC1507 maize plants and by the more than 300‐fold resistance level measured in bioassays with the purified Cry1F protein. Importantly, reciprocal crosses between control and the Cry1F‐selected strains revealed that the resistance is autosomal and incompletely recessive, and the response obtained in the backcross of the F₁ generation with the resistant strain was consistent with simple monogenic inheritance. Additionally, there were no apparent fitness costs associated with resistance either for survival or larval growth on non‐Bt maize leaves. Our findings provide experimental evidence for rapid evolution of Cry1F resistance in S. frugiperda in the laboratory and further reinforce the potential of this species to evolve field resistance to the TC1507 maize as previously reported. The resistant strain isolated in this study provides an opportunity to estimate the resistance allele frequency in the field and to determine the biochemical and molecular basis of the resistance, which should provide further information to assist in the resistance management of S. frugiperda on transgenic maize producing B. thuringiensis proteins.