Response of microbial activity and community structure to decreasing soil osmotic and matric potential

Low soil water content (low matric potential) and salinity (low osmotic potential) occur frequently in soils, particularly in arid and semi-arid regions. Although the effect of low matric or low osmotic potential on soil microorganisms have been studied before, this is the first report which compares the effect of the two stresses on microbial activity and community structure. A sand and a sandy loam, differing in pore size distribution, nutrient content and microbial biomass and community structure, were used. For the osmotic stress experiment, salt (NaCl) was added to achieve osmotic potentials from ?0.99 to ?13.13 MPa (sand) and from ?0.21 to 3.41 MPa (sandy loam) after which the soils were pre-incubated at optimal water content for 10d. For the matric stress experiment, soils were also pre-incubated at optimal water content for 10d, after which the water content was adjusted to give matric potentials from ?0.03 and ?1.68 MPa (sand) and from ?0.10 to 1.46 MPa (sandy loam). After amendment with 2% (w/w) pea straw (C/N 26), soil respiration was measured over 14d. Osmotic potential decreased with decreasing soil water content, particularly in the sand. Soil respiration decreased with decreasing water potential (osmotic?+?matric). At a given water potential, respiration decreased to a greater extent in the matric stress experiment than in the osmotic stress experiment. Decreasing osmotic and matric potential reduced microbial biomass (sum of phospholipid fatty acids measured after 14 days) and changed microbial community structure: fungi were less tolerant to decreasing osmotic potential than bacteria, but more tolerant to decreasing water content. It is concluded that low matric potential may be more detrimental than a corresponding low osmotic potential at optimal soil water content. This is likely to be a consequence of the restricted diffusion of substrates and thus a reduced ability of the microbes to synthesise osmolytes to help maintain cell water content. The study also highlighted that it needs to be considered that decreasing soil water content concentrates the salts, hence microorganisms in dry soils are exposed to two stressors.     

Recovery of soil respiration after drying

Soils are frequently exposed to drying and wetting events and previous studies have shown that rewetting results in a strong but short-lived flush of microbial activity. The aim of this study was to determine the effect of the water content during the dry period on the size and duration of the flush and on the rate of recovery. Two soils (a sand and a sandy loam) were maintained at different water contents (WC) 30, 28 and 25 g water kg^?1 soil (sand) and 130, 105 and 95 g water kg^?1 soil (sandy loam) for 14 days, then rewet to the water content at which respiration was optimal [WC 35 (sand), WC200 (sandy loam)] and maintained at this level until day 68. Ground pea straw (C/N 26) was added and incorporated on day 1. The controls were maintained at the optimal water content throughout the 68 days. Respiration rates during the dry phase (days 1?C14) decreased with decreasing water content. The flush of respiration after rewetting peaked on day 15 in the sandy loam and on day 16 in the sand; it was greatest in the soils that had been maintained at the lowest water content [WC25 (sand) and WC95 (sandy loam)]. Cumulative respiration during the remainder of the incubation period in which all soils were maintained at optimal water content increased more strongly in the soils that had been dry compared to the constantly moist control. On the final day of the dry period (day 14), cumulative respiration in the dry soils was 29?C65% (sand) and 67?C94% (sandy loam) of the constantly moist control whereas on day 68 it was 80?C84% (sand) and 86?C96% (sandy loam). The greater increase in cumulative respiration in the previously dry soils can be explained by the reduced decomposition rates during the dry period which resulted in higher substrate availability on day 14 compared to the constantly moist control. Microbial community structure assessed by phospholipid fatty acid analyses changed over time in all treatments but was less affected by water content than respiration; it differed only between the highest and the lowest water content. These differences were maintained throughout the incubation period in the sandy loam and transiently in the sand. It can be concluded that the soil water content during the dry phase affects the size of the flush in microbial activity upon rewetting and that microbial activity in previously dried soils may not be fully restored even after 54 days of moist incubation, suggesting that drying of soil can have a significant and long-lasting impact on microbial functioning.     

Metformin functionalized dendritic fibrous nanosilica (KCC-1-nPr-Met) as an innovative and green nanocatalyst for the efficient synthesis of tetrahydro-4H-chromene derivatives

An innovative nanocatalyst (KCC-1-nPr-Met) has been prepared from the covalent attachment of metformin on the channels and the pores of n-propyl amine functionalized dendritic fibrous nanosilica (DFNS) and used towards efficient, green, and high yield synthesis of tetrahydro-4H-chromenes derivatives by one-pot three-component reaction of aromatic aldehydes, malononitrile, and dimedone in H₂O-EtOH at room temperature. The designed nanocatalyst has been characterized by energy dispersive X-ray spectroscopy (EDS), Fourier transform infrared spectroscopy (FT-IR), and adsorption/desorption analysis (BET) techniques. Also, field emission scanning electron microscopy (FE-SEM) was used to study the morphology of prepared nanocatalyst. The engineered nanocatalyst with uniform fibrous spheres has dendritic structure, high pore volume (0.35 cm³/g), and great surface area (178 m²/g). Hence, the specific dendritic structure of the prepared nanocatalyst not only improve the diffusion ability of the reactants and products, but also, increase the availability of dynamic sites in the pores and channels of the catalyst. According to the obtained results, a unique strategy was proposed towards the synthesis of important biologically active scaffolds in the presence of nontoxic and environmental friendly nanocatalyst and media. Milder reaction conditions (room temperature), shorter reaction times (5-30 minutes), excellent yields (92%-98%) of the products with higher purity, very simple workup procedure, and using of EtOH: H₂O as a green solvent are the advantages of the presented work.     

GHSR DNA hypermethylation is a new epigenetic biomarker for gastric adenocarcinoma and beyond

Aberrations of DNA methylation are early events in the development of tumors. In this study, we investigated the DNA methylation status of growth hormone secretagogue receptor (GHSR), a promising pan-cancer biomarker, in gastric cancer (GC). Initially, data sets from DNA methylation and gene expression studies available at Gene Expression Omnibus (GEO) were analyzed. Confirmation was done on primary tumor specimens and adjacent normal stomach tissue samples. Both analyses showed significant hypermethylation of GHSR. For further validation, The Cancer Genome Atlas data on stomach cancer was used. A receiver operating characteristic curve analysis yielded an area under the curve value of 0.85, corroborating its usefulness as a diagnostic marker. A genome-wide comethylation analysis revealed several correlated genes. CREB1 was found to act as an upstream regulator of this gene network. Furthermore, GHSR methylation was found to be a biomarker in several other tumor entities, namely cancers of the bladder, endometrium, esophagus, head and neck, liver, thyroid, kidney, and ovary. Our findings along with previous reports on other types of cancer suggest a high potential of GHSR gene methylation as a pan-cancer biomarker, which could be considered for liquid biopsy applications.     

An efficient protocol for micropropagation of old cypress of Abarkuh (Cupressus sempervirens var. horizontalis [Mill.]) under in vitro condition

Plant Cell, Tissue and Organ Culture (PCTOC) - This study was carried out to investigate the DNA markers between diploid and colchicine-induced autotetraploid Platycodon grandiflorum A. De Candolle...     

Yellow nail syndrome: treatment of lymphedema using low pressure compression

The present report describes a case with the triad of yellow nail syndrome (YNS) and the use of low-pressure compression pump as treatment of lymphedema in YNS. A 71-year-old woman presented with bilateral lower extremity lymphedema, yellow nails, and recurrent bilateral pleural effusion. In this case, we specifically focused on lymphedema treatment of the legs besides other recommendations for YNS.     

Methylglyoxal inhibition of cytosolic ascorbate peroxidase from Nicotiana tabacum

Methylglyoxal (MG) is one of the aldehydes accumulated in plants under environmental stress. Cytosolic ascorbate peroxidase (cAPX) plays a key role in the protection of cells from oxidative damage by scavenging reactive oxygen species in higher plants. A cDNA encoding cAPX, named NtcAPX, was isolated from Nicotiana tabacum. We characterized recombinant NtcAPX (rNtcAPX) as a fusion protein with glutathione S‐transferase to investigate the effects of MG on APX. NtcAPX consists of 250 amino acids and has a deduced molecular mass of 27.5 kDa. The rNtcAPX showed a higher APX activity. MG treatments resulted in a reduction of APX activity and modifications of amino groups in rNtcAPX with increasing K_m for ascorbate. On the contrary, neither NaCl nor cadmium reduced the activity of APX. The present study suggests that inhibition of APX is in part due to the modification of amino acids by MG. © 2012 Wiley Periodicals, Inc. J Biochem Mol Toxicol 26:315–321, 2012; View this article online at wileyonlinelibrary.com . DOI 10.1002/jbt.21423     

An investigation on acarbose inhibition and the number of active sites in an amylopullulanase (L14-APU) from an Iranian Bacillus sp.

An amylopullulanase (L₁₄-APU) from an Iranian thermophilic bacterium was purified and the effect of acarbose, as a general inhibitor of α-amylases, on pullulan and starch hydrolysis catalyzed by L₁₄-APU was investigated. The inhibition is a competitive type whereas inhibition constants for pullulan and starch are 99 μM and 72 μM, respectively. Investigation of the reaction rate in a system contains competitive substrates and the inhibition type of acarbose in presence of different substrates suggests that L₁₄-APU possesses only one active site for two activities. The analysis of metal ions and other reagents effects has shown that Ca²⁺, Mg²⁺, Mn²⁺ and Co²⁺ enhanced both activities of the enzyme while N-bromosuccinimide treatment leads to the complete inactivation of the enzyme. The enzyme activity increased in the presence of low concentration of SDS as a surfactant.     

Baseline morbidity in 2,990 adult African volunteers recruited to characterize laboratory reference intervals for future HIV vaccine clinical trials

Background

An understanding of the health of potential volunteers in Africa is essential for the safe and efficient conduct of clinical trials, particularly for trials of preventive technologies such as vaccines that enroll healthy individuals. Clinical safety laboratory values used for screening, enrolment and follow-up of African clinical trial volunteers have largely been based on values derived from industrialized countries in Europe and North America. This report describes baseline morbidity during recruitment for a multi-center, African laboratory reference intervals study.

Methods

Asymptomatic persons, aged 18–60 years, were invited to participate in a cross-sectional study at seven sites (Kigali, Rwanda; Masaka and Entebbe, Uganda; Kangemi, Kenyatta National Hospital and Kilifi, Kenya; and Lusaka, Zambia). Gender equivalency was by design. Individuals who were acutely ill, pregnant, menstruating, or had significant clinical findings were not enrolled. Each volunteer provided blood for hematology, immunology, and biochemistry parameters and urine for urinalysis. Enrolled volunteers were excluded if found to be positive for HIV, syphilis or Hepatitis B and C. Laboratory assays were conducted under Good Clinical Laboratory Practices (GCLP).

Results and Conclusions

Of the 2990 volunteers who were screened, 2387 (80%) were enrolled, and 2107 (71%) were included in the analysis (52% men, 48% women). Major reasons for screening out volunteers included abnormal findings on physical examination (228/603, 38%), significant medical history (76, 13%) and inability to complete the informed consent process (73, 13%). Once enrolled, principle reasons for exclusion from analysis included detection of Hepatitis B surface antigen (106/280, 38%) and antibodies against Hepatitis C (95, 34%). This is the first large scale, multi-site study conducted to the standards of GCLP to describe African laboratory reference intervals applicable to potential volunteers in clinical trials. Approximately one-third of all potential volunteers screened were not eligible for analysis; the majority were excluded for medical reasons.     

Evaluating the Potential of an Antibody Against Recombinant OmpW Antigen in Detection of Vibrio cholerae by Surface Plasmon Resonance (SPR) Biosensor

Surface plasmon resonance (SPR), a highly sensitive and label-free optical biosensing technique, is a powerful tool for studying biomolecular interactions. An immunosensor for rapid, sensitive, and selective detection of Vibrio cholerae on the basis of SPR is reported. Recombinant OmpW antigen (a bacterial outer-membrane protein) of V. cholerae was expressed and purified and raising of polyclonal rabbit anti-OmpW was done. Antibodies were immobilized on a sensor surface and interactions between OmpW protein and the whole cell of V. cholerae with immobilized antibodies were studied in different experiments. The aim of this study was to evaluate the potential of anti-OmpW in detection of V. cholerae by developing an immunosensor based on SPR. The results showed high affinity interaction between OmpW and anti-OmpW (K _D = 2.4 ± 0.07 × 10⁻⁹ M) and SPR signals had a linear relationship with the number of V. cholerae ranging from 1 × 10² to 1 × 10⁷ cells/mL with limit of detection of 50 cells/mL. The specificity of the developed immunoassay was examined using some non-V. cholerae bacteria which did not produce any significant responses. This method is rapid, sensitive, and specific to target V. cholerae with a total analysis time of less than 60 min.