Egg-derived tyrosine phosphatase as a Potential Biomarker for Muscle Ageing and Degeneration in Drosophila melanogaster

Ageing is associated with declined activity of behaviors, physiology and metabolic processes （Arking, 2006）. In- vestigations in model organisms have indicated the exis- tence of ＂functional senescence＂, the progressive decline of biological functions with age and the decline in the activity may vary from tissue to tissue. Consequently, studies per- taining to the key organs/tissues whose functions deterio- rate/fail with age have led to the development of tissue specific ageing biomarkers （Grotewiel et al., 2005; Demontis et al., 2013）.     

Are all seeds equal? Spatially explicit comparisons of seed fall and sapling recruitment in a tropical forest

Understanding demographic transitions may provide the key to explain the high diversity of tropical tree communities. In a faunally intact Amazonian forest, we compared the spatial distribution of saplings of 15 common tree species with patterns of conspecific seed fall, and examined the seed-to-sapling transition in relation to locations of conspecific trees. In all species, the spatial pattern of sapling recruitment bore no resemblance to predicted distributions based on the density of seed fall. Seed efficiency (the probability of a seed producing a sapling) is strongly correlated with distance from large conspecific trees, with a >30-fold multiplicative increase between recruitment zones that are most distant vs. proximal to conspecific adults. The striking decoupling of sapling recruitment and conspecific seed density patterns indicates near-complete recruitment failure in areas of high seed density located around reproductive adults. Our results provide strong support for the spatially explicit predictions of the Janzen-Connell hypothesis.     

Macrobenthic biomass relations in the Faroe-Shetland Channel: an Arctic-Atlantic boundary environment

The Faroe-Shetland Channel, located in the NE Atlantic, ranges in depth from 0-1700 m and is an unusual deep-sea environment because of its complex and dynamic hydrographic regime, as well as having numerous different seafloor habitats. Macrofaunal samples have been collected on a 0.5 mm mesh sieve from over 300 stations in a wide area survey and on nested 0.5 and 0.25 mm mesh sieves along a specific depth transect. Contrary to general expectation, macrofauanl biomass in the Channel did not decline with increasing depth. When examined at phylum level, two main biomass patterns with depth were apparent: (a) polychaetes showed little change in biomass on the upper slope then increased markedly below 500 m to a depth of 1100 m before declining; and (b) other phyla showed enhanced biomass between 300-500 m. The polychaete response may be linked with a seafloor environment change to relatively quiescent hydrodynamic conditions and an increasing sediment mud content that occurs at c. 500 m. In contrast, the mid-slope enhancement of other phyla biomass may reflect the hydrodynamically active interface between the warm and cold water masses present in the Channel at c. 300-500 m. Again contrary to expectation, mean macrofaunal body size did not decline with depth, and the relative contribution of smaller (>0.25 mm<0.5 mm) to total (>0.25 mm) macrobenthos did not increase with depth. Overall our total biomass and average individual biomass estimates appear to be greater than those predicted from global analyses. It is clear that global models of benthic biomass distribution may mask significant variations at the local and regional scale.     

Molecular Characterization and Genetic Diversity of Insecticidal Crystal Protein Genes in Native Bacillus thuringiensis Isolates

The Western Ghats of Karnataka natural ecosystem are among the most diverse and is one of the eight hottest hotspots of biological diversity in the world, that runs along the western part of India through four states including Karnataka. Bacillus thuringiensis (Bt) strains were isolated from soils of Western Ghats of Karnataka and characterized by molecular and analytical methods as a result of which 28 new Bt-like isolates were identified. Bt strains were isolated from soil samples using sodium acetate selection method. The morphology of crystals was studied using light and phase contrast microscopy. Isolates were further characterized for insecticidal cry gene by PCR, composition of toxins in bacterial crystals by SDS-PAGE cloning, sequencing and evaluation of toxicity was done. As a result 28 new Bt-like isolates were identified. Majority of the isolates showed the presence of a 55 kDa protein bands on SDS-PAGE while the rest showed 130, 73, 34, and 25 kDa bands. PCR analysis revealed predominance of Coleopteran-active cry genes in these isolates. The variations in the nucleotide sequences, crystal morphology, and mass of crystal protein(s) purified from the Bt isolates revealed genetic and molecular diversity. Three strains containing Coleopteran-active cry genes showed higher activity against larvae Myllocerus undecimpustulatus undatus Marshall (Coleoptera: Curculionidae) than B. thuringiensis subsp. Morrisoni. Results indicated that Bt isolates could be utilized for bioinsecticide production, aiming to reduce the use of chemical insecticide which could be useful to use in integrated pest management to control agriculturally important pests for sustainable crop production.     

Diversity and ecology of lianas in tropical dry evergreen forests on the Coromandel Coast of India under various disturbance regimes

In this study we attempted to explore patterns of diversity, abundance, climbing and dispersal mode of lianas in relation to disturbance in 40 Indian subtropical dry forests. The sites were selected to represent four disturbance categories: relatively undisturbed, moderately disturbed, much disturbed and heavily disturbed. All lianas ≥1 cm dbh were counted, which resulted in a total amount of 5689 individuals of lianas, representing 77 species in 62 genera and 32 families. Liana species richness and abundance increased with forest disturbance, but the liana basal area values showed an opposite trend, with high scores in undisturbed sites. Twining was the main climbing mechanism (61.3%) and zoochory (59.6%) was the main dispersal mode in all the four forest categories. Application of Bray–Curtis cluster analysis produced three distinct clusters in which the much disturbed category was more distant from the others. High abundance of large lianas in undisturbed sites and that of the invasive Lantana camara in heavily disturbed site signals the conservation significance of the less disturbed study sites. The predominance of zoochorous dispersal indicates the faunal dependence of lianas, besides of host trees, thus underlining the need for a holistic approach in biodiversity conservation of this and similar tropical forests.     

Understanding the role of domain–domain linkers in the spatial orientation of domains in multi-domain proteins

Inter-domain linkers (IDLs)’ bridge flanking domains and support inter-domain communication in multi-domain proteins. Their sequence and conformational preferences enable them to carry out varied functions. They also provide sufficient flexibility to facilitate domain motions and, in conjunction with the interacting interfaces, they also regulate the inter-domain geometry (IDG). In spite of the basic intuitive understanding of the inter-domain orientations with respect to linker conformations and interfaces, we still do not entirely understand the precise relationship among the three. We show that IDG is evolutionarily well conserved and is constrained by the domain–domain interface interactions. The IDLs modulate the interactions by varying their lengths, conformations and local structure, thereby affecting the overall IDG. Results of our analysis provide guidelines in modelling of multi-domain proteins from the tertiary structures of constituent domain components.     

Random assembly of SUR subunits in KATP channel complexes

Sulfonylurea receptors (SURs) associate with Kir6.x subunits to form tetradimeric KATP channel complexes. SUR1 and SUR2 confer differential channel sensitivities to nucleotides and pharmacological agents, and are expressed in specific, but overlapping, tissues. This raises the question of whether these different SUR subtypes can assemble in the same channel complex and generate channels with hybrid properties. To test this, we engineered dimeric constructs of wild type or N160D mutant Kir6.2 fused to SUR1 or SUR2A. Dimeric fusions formed functional, ATP-sensitive, channels. Coexpression of weakly rectifying SUR1-Kir6.2 (WTF-1) with strongly rectifying SUR1-Kir6.2[N160D] (NDF-1) in COSm6 cells results in mixed subunit complexes that exhibit unique rectification properties. Coexpression of NDF-1 and SUR2A-Kir6.2 (WTF-2) results in similar complex rectification, reflecting the presence of SUR1- and SUR2A-containing dimers in the same channel. The data demonstrate clearly that SUR1 and SUR2A subunits associate randomly, and suggest that heteromeric channels will occur in native tissues.     

Leaf Functional Traits and Stem Wood Characteristics Influencing Biomass Productivity of Mulberry (Morus spp. L) Genotypes Grown in Short-Rotation Coppice System

The present study was undertaken to obtain insights into the productivity determinant traits of mulberry (Morus spp. L.), a potential bioenergy tree crop. Our objectives were to identify leaf functional traits and stem wood characteristics that are correlated to biomass yield of mulberry. Based on the growth performance, six mulberry genotypes from different performance groups including high (Selection1 and Thaibeelad), average (Mysore Local) and poor (Triploid10, Jhoropakari and Selection1635) were selected for the study, along with a reference high-yielding genotype (Victory1). The study was conducted in Southern India for two consecutive years, covering two experimental seasons including exp season I (July 2009 to October 2009) and exp season II (July 2010 to October 2010). Mulberry trees were cultivated in a short-rotation coppice system under well-irrigated optimum farming conditions. Data were collected on biomass yield along with several leaf-level physiobiochemical characteristics and wood quality parameters. Significant genetic variation was recorded amongst the genotypes in most of the studied parameters. Fifteen out of a total of 22 traits, used in computing correlation coefficient matrix, were found to correlate with aboveground biomass yield. Light-saturated rate of photosynthesis, performance index, leaf nitrogen content, minimum leaf water potential and leaf-specific hydraulic conductance showed strong positive correlation with biomass productivity. Wood density, wood cross-sectional area and fibre cell density exhibited tight correlation with woody biomass yield. In conclusion, the identified 15 characteristics could be useful in the selection of suitable mulberry genotypes for higher biomass yield.