Use of coastal waters as condenser coolant in electric power plants: Impact on phytoplankton and primary productivity

(1) Studies on phytoplankton entrained in cooling system of a power plant revealed a reduction in biomass and gross primary productivity (GPP) at outfall, compared to intake.     

Correlation of antibacterial activity of some N-[5-(2-furanyl)-2-methyl-4-oxo-4H-thieno[2,3-d]pyrimidin-3-yl]-carboxamide and 3-substituted-5-(2-furanyl)-2-methyl-3H-thieno[2,3-d]pyrimidin-4-ones with topological indices using Hansch analysis

The antimicrobial activity of the N-[5-(2-furanyl)-2-methyl-4-oxo-4H-theino[2,3-d]pyrimidin-3-y1]-carboxamides and 3-substituted-5-(2-furanyl)-2-methyl-3H-thieno[2,3-d]pyrimidin-4-ones was correlated with different topological indices using Hansch analysis. Good correlations were obtained through a simple regression equation with third order molecular connectivity index (3chi). The developed QSAR models were crossvalidated by leave-one-out technique.     

Kinetics of leather dyeing pretreated with enzymes: Role of acid protease

In the present investigation, kinetics of dyeing involving pretreatment with acid protease has been presented. Application of acid protease in dyeing process resulted in increased absorption and diffusion of dye into the leather matrix. Enzyme treatment at 1% concentration, 60 min duration and 50 °C resulted in maximum of 98% dye exhaustion and increased absorption rate constants. The final exhaustion (C_∞) for the best fit of CI Acid Black 194 dye has been 98.5% with K and r² values from the modified Cegarra-Puente isotherm as 0.1033 and 0.0631. CI Acid Black 194 being a 2:1 metal complex acid dye exhibited higher absorption rate than the acid dye CI Acid Black 210. A reduction in 50% activation energy calculated from Arrhenius equation has been observed in enzyme assisted dyeing process of both the dyes that substantiates enhanced dye absorption. The absorption rate constant calculated with modified Cegarra-Puente equation confirm higher rate constants and faster kinetics for enzyme assisted dyeing process. Enzyme treated leather exhibited richness of color and shade when compared with control. The present study substantiates the essential role of enzyme pretreatment as an eco-friendly leather dyeing process.     

HIV-1 Infection of DC: Evidence for the Acquisition of Virus Particles from Infected T Cells by Antigen Uptake Mechanism

Dendritic cells (DC) play a pivotal role in transmission and dissemination of HIV-1. Earlier studies reported that DC present at the site of infection trap virus particles via DC-SIGN and transfer the virus to the interacting naïve T cells. This prompted us to ask the question whether DC could acquire virus from infected T cells during DC-T cell interaction. To address this, we investigated the likely transfer of virus from HIV-1 infected T cells to DC and the underlying mechanisms involved. Results indicate that DC acquire virus from infected T cells via antigen uptake mechanism and this results in infection of DC with expression of proteins directed by viral DNA. Further studies with HIV-1 lacking the Env protein also resulted in infection of DC. The use of antibodies against DC-SIGN and DC-SIGN-R ruled out a role for receptor in the infection of DC. Additional data show that DC infection is directly correlated with the ability of DC to take up antigen from infected T cells. Overall, these studies provide evidence to suggest that HIV-1, besides infecting immune cells, also utilizes immunological mechanism(s) to acquire and disseminate virus.     

Adsorption into the MFI zeolite of aromatic molecule of biological relevance. Investigations by Monte Carlo simulations

Adsorption of paracresol and water into the silicalite-1 (MFI) zeolite has been investigated using canonical and grand-canonical Monte Carlo simulations. The most stable sites of adsorption of paracresol are found to be located at the channel intersections. Grand-canonical simulations have shown that at low loading, water molecules adsorb preferably at the vicinity of paracresol molecules, whereas they are also located in the sinusoidal channels as the loading increases. In order to explain the experimental adsorption isotherm observed for the coadsorption of water and paracresol in the MFI zeolite we propose a new concept of apparent adsorption enthalpy that varies with the concentration of the solution. The mathematical expression for the apparent enthalpy is introduced in an adsorption isotherm model. We shall refer to this theoretical isotherm as a non-langmuirian isotherm. The non-linear expression for the apparent adsorption enthalpy accounts for a variable accessibility of the sites of adsorption with respect to the concentration of the solution. Figure Co-adsorption of paracresol and water in silicalite-1 zeolite and comparison between experimental and modelled adsorption isotherms.     

Problem-based learning biotechnology courses in chemical engineering

We have developed a series of upper undergraduate/graduate lecture and laboratory courses on biotechnological topics to supplement existing biochemical engineering, bioseparations, and biomedical engineering lecture courses. The laboratory courses are based on problem-based learning techniques, featuring two- and three-person teams, journaling, and performance rubrics for guidance and assessment. Participants initially have found them to be difficult, since they had little experience with problem-based learning. To increase enrollment, we are combining the laboratory courses into 2-credit groupings and allowing students to substitute one of them for the second of our 2-credit chemical engineering unit operations laboratory courses.     

Use of the Plant Defense Protein Osmotin To Identify Fusarium oxysporum Genes That Control Cell Wall Properties

Fusarium oxysporum is the causative agent of fungal wilt disease in a variety of crops. The capacity of a fungal pathogen such as F. oxysporum f. sp. nicotianae to establish infection on its tobacco (Nicotiana tabacum) host depends in part on its capacity to evade the toxicity of tobacco defense proteins, such as osmotin. Fusarium genes that control resistance to osmotin would therefore reflect coevolutionary pressures and include genes that control mutual recognition, avoidance, and detoxification. We identified FOR (Fusarium Osmotin Resistance) genes on the basis of their ability to confer osmotin resistance to an osmotin-sensitive strain of Saccharomyces cerevisiae. FOR1 encodes a putative cell wall glycoprotein. FOR2 encodes the structural gene for glutamine:fructose-6-phosphate amidotransferase, the first and rate-limiting step in the biosynthesis of hexosamine and cell wall chitin. FOR3 encodes a homolog of SSD1, which controls cell wall composition, longevity, and virulence in S. cerevisiae. A for3 null mutation increased osmotin sensitivity of conidia and hyphae of F. oxysporum f. sp. nicotianae and also reduced cell wall β-1,3-glucan content. Together our findings show that conserved fungal genes that determine cell wall properties play a crucial role in regulating fungal susceptibility to the plant defense protein osmotin.Studies of plant-pathogen interactions strongly suggest that under the pressure to survive, plants and pathogens continuously react to one another''s defense arsenal and evolve to overcome these defenses (13). Plants recognize pathogen-associated molecular patterns, such as fungal cell wall fragments composed of chitin, glucans, oligosaccharides, or glycoprotein peptides (32). It has been established that pathogens evolved effector proteins to avoid plant surveillance mechanisms that recognize pathogen-associated molecular patterns and this in turn led to the evolution of plant surveillance mechanisms that recognize pathogen-specific effector proteins. All pathogen recognition mechanisms induce intracellular signaling that culminates in the synthesis of factors, such as antimicrobial plant proteins, that help in limiting the severity of infection (74). The antimicrobial proteins are therefore among the ultimate effectors of plant defense. There is evidence of recognition between plant antimicrobial proteins and pathogen-specific molecules (74). Therefore, pathogen mechanisms of resistance to the antimicrobial proteins and the antimicrobial proteins themselves must have coevolved. Consequently, we postulated that a screen for fungal genes that alter the sensitivity of a phytopathogen to an antifungal protein of the host plant (that is, a cognate plant defense effector) would lead to identification of genes involved in controlling pathogenicity, in controlling access of the antifungal protein to its target fungal molecules (such as genes controlling cell surface composition), and in controlling detoxification mechanisms.The plant antifungal protein selected to test this hypothesis was osmotin. Osmotin is an antifungal protein that is overexpressed in and secreted by salt-adapted cultured tobacco (Nicotiana tabacum) cells (63). It is a member of a family of ubiquitous plant proteins, referred to as plant pathogenesis-related proteins of family 5 (PR-5), that are implicated in defense against fungi (74). Osmotin gene and protein expression is induced by biotic stresses, and overexpression of osmotin delays development of disease symptoms in transgenic plants (41, 42, 43, 84). The genetic bases of the susceptibility and resistance of Saccharomyces cerevisiae to osmotin have been explored in our laboratory (49, 50). The results show that specific interactions of osmotin with the plasma membrane are responsible for cell death signaling. However, because the cell wall governs access of osmotin to the plasma membrane, differences in cell wall composition largely account for the differential osmotin sensitivity of various S. cerevisiae strains, and specific cell wall components play a significant role in modulating osmotin toxicity (30, 31, 49, 50, 81, 82). These studies in the model nonpathogenic fungus, S. cerevisiae, support our hypothesis that a screen for genes that alter the sensitivity of a phytopathogenic fungus to an antifungal defense effector protein of the host plant will uncover genes involved in controlling access of the antifungal protein to its target fungal molecules.Osmotin, like other plant defense antifungal proteins, has specific but broad-spectrum antifungal activity (74). One of the most osmotin-sensitive phytopathogenic fungi is Fusarium oxysporum. F. oxysporum is an ascomycete fungus, like S. cerevisiae, and has been touted as an appropriate multihost model for studying fungal virulence (53). It is a soilborne plant pathogen of economic significance, because it causes vascular wilt disease on a large variety of crop plants and produces toxic food contaminants (17, 58). In humans it also causes skin, nail, and eye disease that can become serious or life-threatening illnesses in immunocompromised patients (52, 69). F. oxysporum f. sp. lycopersici, F. oxysporum f. sp. nicotianae, and F. oxysporum f. sp. meloni, like S. cerevisiae, are quite sensitive to osmotin (1, 51; M. L. Narasimhan, unpublished data). Furthermore, it was recently shown that overexpression in F. oxysporum f. sp. nicotianae of an S. cerevisiae cell wall glycoprotein that increases the osmotin resistance of S. cerevisiae also increases the osmotin resistance of the plant pathogen and its virulence on tobacco, the osmotin-producing host plant (51). This suggested that osmotin resistance mechanisms may be conserved between S. cerevisiae and F. oxysporum and that S. cerevisiae could be used as a tool to uncover F. oxysporum genes that control osmotin sensitivity or resistance.In the current study, we expressed an F. oxysporum f. sp. nicotianae cDNA library in the osmotin-sensitive S. cerevisiae strain BWG1-7a and selected genes for their ability to increase osmotin tolerance. We report here the identification and characterization of three FOR (Fusarium Osmotin Resistance) genes that affect the cell wall in S. cerevisiae. The product of FOR1 has homology with a putative cell surface glycoprotein; FOR2 encodes glutamine:fructose-6-phosphate amidotransferase (GFAT), an enzyme that catalyzes the first step in the biosynthetic pathway leading to amino sugar-containing macromolecules, such as glycoproteins and chitin (64); and FOR3 has high homology with S. cerevisiae SSD1, a gene that controls cell wall composition and virulence (31, 78). FOR2 and FOR3 are the functional equivalents of the corresponding S. cerevisiae genes. Our parallel analysis using two model fungi verifies the notion that cell wall proteins play a critical role in determining the sensitivity/resistance of fungi to osmotin. In addition, these results implicate that the tobacco defense protein, osmotin, can serve as an effective/useful tool in identifying genes that control cell wall composition not only in a model fungus, such as S. cerevisiae, but also in phytopathogenic fungi, such as F. oxysporum.     

Potent and selective bicyclic lactam inhibitors of thrombin: Part 3: P1' modifications

The synthesis and antithrombotic activity of a series of nonpeptide bicyclic thrombin inhibitors are described. We have explored the SAR around the P1' site. Modification of the P1' site has been found to affect potency and selectivity.