Systematic Sequencing of the 180 Kilobase Region of the Bacillus Subtilis Chromosome Containing the Replication Origin

We have determined a 180 kb contiguous sequence in the replicationorigin region of the Bacillus subtilis chromosome. Open readingframes (ORF) in this region were unambiguously identified fromthe determined sequence, using criteria characteristic for theB. subtilis gene structure, i.e., starting with an ATG, GTGor TTG codon preceded by sequences complementary to the 3' endof the 16S rRNA. Four rRNA gene sets, 7 individual tRNA genesand 1 scRNA gene were identified, occupying 20 kb in total.In the remaining 160 kb region, 158 ORFs were identified, suggestingthat 1 ORF is coded on average by 1 kb of DNA of the B. subtilisgenome. Among the 158 ORFs, the functions of 48 ORFs were assignedand those of 11 ORFs are suggested through significant similaritiesto known proteins present in data banks. However, the functionsof more than half of the ORFs (63%) remain to be determined.     

Plant growth retardant activity of 4-homoisotwistane derivatives

A variety of simple derivatives of 3-substituted 4-homoisotwistane derivatives were prepared, and their effect on the growth of cucumber seedlings in complete darkness was investigated. The 3-hydroxy derivative was found to show a strong inhibitory activity at 50 μg/ml, so a series of other hydroxy derivatives of 4-homoisotwistane, endo-2-, exo-2-, and 5-hydroxy- and exo-2,3-dihydroxy-4-homoisotwistane were prepared in order to obtain information on structure-activity relationships. The endo-2-hydroxy derivative inhibited the growth of cucumber and the germination of lettuce seed at 12.5 μg/ml. All the hydroxy derivatives tested increased the number of adventitious roots in hypocotyls of kidney bean at 100 μg/ml, but they inhibited root formation at the lowest part of the cuttings, and the effect was again exhibited most strongly by the endo-2-hydroxy compound. It is suggested that the 2- and 3-hydroxy derivatives possess a potent activity as plant growth retardants.     

Sequence Analysis of the 36-kb Region Between gntZ and trnY Genes of Bacillus Subtilis Genome*

Within the framework of an international Bacillus subtilis genomesequencing project, we have determined a 36-kb sequence coveringthe region between the gntZ and trnY genes. In addition to fivegenes sequenced and characterized previously, 27 putative proteincoding sequences (open reading frame; ORF) were identified.A homology search for the newly identified ORFs revealed thatsix of them had similarities to known proteins. It is notablethat new ORFs belonging to response-regulator aspartate phosphatase(Rap) and its regulator (Phr) families, and response regulatorand sensory kinase families of two-component signal transductionsystems have been identified. Furthermore, we found that some180-bp non-coding sequence, that might be an remnant of an ancientIS element, is preserved in at least five loci of the B. subtilisgenome.     

Mechanism of Anucleate Cell Production in the oriC-Deleted Mutants of Bacillus subtilis

We constructed oriC-deleted mutants of Bacillus subtilis byintegrating the minimal replication region of plasmid pLS32into the proA (115°), spoIIIJ (360°) and thrS (256°)loci of the chromosome, respectively. All three mutants producedanucleate cells and the DNA/protein ratio was lower than thatof the wild-type strain when grown in nutrient broth. However,when grown in minimal-glucose medium, the frequency of anucleatecells was reduced in all of them and the DNA/protein ratio wasrestored to normal. Especially, the oriC-deleted mutant in whichthe plasmid was integrated near oriC produced almost no anucleatecell. These results indicate that initiation frequency of chromosomereplication from the integrated plasmid origin were reduceddisproportionately to cell mass increase in rich medium, whichin turn disrupted coordination between DNA replication cycleand cell division cycle. The locations of the plasmid originrelative to the natural oriC locus affected the production ofanucleate cell remarkably, suggesting that partition mechanismof chromosome was also impaired by the translocation of itsreplication origin.     

Sequence Analysis of the groESL-cotA Region of the Bacillus subtilis Genome, Containing the Restriction/Modification System Genes

We have determined a 35-kb sequence of the groESL-gutR-cotA(45°–52°) region of the Bacillus subtilis genome.In addition to the groESL, gutRB and cotA genes reported previously,we have newly identified 24 ORFs including gutA and fruC genes,encoding glucitol permease and fructokinase, respectively. Theinherent restriction/modification system genes, hsdMR and hsdMM,were mapped between groESL and gutRB, and we have identifiedtwo open reading frames (ORFs) encoding 5-methylcytosine formingDNA methyl transferase and an operon probably encoding a restrictionenzyme complex. The unusual genome structure of few ORFs andlower GC content around the restriction/modification genes stronglysuggests that the region originated from a bacteriophage integratedduring evolution.