Virulence determinants, drug resistance and mobile genetic elements of Laribacter hongkongensis: a genome-wide analysis

Background

Laribacter hongkongensis is associated with community-acquired gastroenteritis and traveler's diarrhea. In this study, we performed an in-depth annotation of the genes in its genome related to the various steps in the infective process, drug resistance and mobile genetic elements.

Results

For acid and bile resistance, L. hongkongensis possessed a urease gene cassette, two arc gene clusters and bile salt efflux systems. For intestinal colonization, it possessed a putative adhesin of the autotransporter family homologous to those of diffusely adherent Escherichia coli (E. coli) and enterotoxigenic E. coli. To evade from host defense, it possessed superoxide dismutase and catalases. For lipopolysaccharide biosynthesis, it possessed the same set of genes that encode enzymes for synthesizing lipid A, two Kdo units and heptose units as E. coli, but different genes for its symmetrical acylation pattern, and nine genes for polysaccharide side chains biosynthesis. It contained a number of CDSs that encode putative cell surface acting (RTX toxin and hemolysins) and intracellular cytotoxins (patatin-like proteins) and enzymes for invasion (outer membrane phospholipase A). It contained a broad variety of antibiotic resistance-related genes, including genes related to β-lactam (n = 10) and multidrug efflux (n = 54). It also contained eight prophages, 17 other phage-related CDSs and 26 CDSs for transposases.

Conclusions

The L. hongkongensis genome possessed genes for acid and bile resistance, intestinal mucosa colonization, evasion of host defense and cytotoxicity and invasion. A broad variety of antibiotic resistance or multidrug resistance genes, a high number of prophages, other phage-related CDSs and CDSs for transposases, were also identified.     

Heat Shock Responses of Closely Related Species of Tropical and Desert Fish

Over the past twelve years, we have studied heat shock proteinsin two tropical species, a half dozen desert species and a numberof hemiclones of viviparous fishes in the genus Poeciliopsis.Heat shock protein (Hsp) isoform patterns were determined usinghigh resolution two-dimensional polyacrylamide gels. Two familiesof Hsps were studied in detail, the nucleocytoplasmic 70 kilodaltonHsp70 family and the 30 kilodalton Hsp30 family related to -crystallin.The temperature dependence of Hsp accumulation was investigatedusing both intact fish and cultured cells. When the thresholdtemperatures were mapped onto thermal preference profiles, itwas apparent that the Hsp70 threshold (33°C) was closelylinked to the most frequently selected temperatures and theHsp30 threshold (37°C) was closely linked to high temperaturesthat fish rarely selected, indicating that fish deploy thesetwo molecular chaperones differently. One tropical species P.gracilis is a genetic reservoir for most of the Hsp70 isoformsof the desert species. Acquired resistance to 41°C was stronglycorrelated with Hsp70 abundance for gracilis that containedHsp70 isoform 3 whereas fish lacking this isoform showed similarlevels of acquired thermotolerance which did not correlate withHsp70 abundance, suggesting multiple, compensating mechanismsof acquired resistance. Isoform 3 was degraded in cultured cellsfrom a desert species during several hours of recovery at normaltemperature following heat shock whereas two other Hsp70 isoformswere stable. The implications of this property of isoform 3are discussed.     

Bryophytes in perennially moist forests of Papua New Guinea: ecological orientation and predictions of disturbance effects

Water relations of bryophytes must be understood along at least four dimensions: hydration/dehydration frequency; hydration duration; dehydration duration; degree of water loss. All these are biomass-dependent functions such that large colonies of bryophytes may maintain hydration longer than smaller colonies. The spread of a bryophyte colony allows lateral movement of capillary water; contiguous clones will thus allow lateral conduction of that water. In contrast, separated tufts or cushions may store water but will contribute very little to its transfer over the surface of the phorophyte.
Many of the tropical rainforests of New Guinea have a larger mass of epiphytic bryophytes than any temperate forest. The primary effect of disturbance in these forests is a reduction in bryomass, presumably due to desiccation because of increased insolation and wind movement. The reduction of bryomass will decrease water and mineral retention in the bryophyte clones; and the reduction in the size of those clones will reduce their contiguity and thus interfere with bryophyte-mediatcd water and mineral transfer. Disturbance may alter bryophyte species frequency but, under present agricultural and forestry practices in New Guinea, I have seen no evidence of significant loss of bryophyte species.