Evidence of widespread effects of ozone on crops and (semi‐)natural vegetation in Europe (1990–2006) in relation to AOT40‐ and flux‐based risk maps

Records of effects of ambient ozone pollution on vegetation have been compiled for Europe for the years 1990–2006. Sources include scientific papers, conference proceedings, reports to research funders, records of confirmed ozone injury symptoms and an international biomonitoring experiment coordinated by the ICP Vegetation. The latter involved ozone‐sensitive (NC‐S) and ozone‐resistant (NC‐R) biotypes of white clover (Trifolium repens L.) grown according to a common protocol and monitored for ozone injury and biomass differences in 17 European countries, from 1996 to 2006. Effects were separated into visible injury or growth/yield reduction. Of the 644 records of visible injury, 39% were for crops (27 species), 38.1% were for (semi‐) natural vegetation (95 species) and 22.9% were for shrubs (49 species). Owing to inconsistencies in reporting effort from year to year it was not possible to determine geographical or temporal trends in the data. Nevertheless, this study has shown effects in ambient air in 18 European countries from Sweden in the north to Greece in the south. These effects data were superimposed on AOT40 (accumulated ozone concentrations over 40 ppb) and POD3_gen (modelled accumulated stomatal flux over a threshold of 3 nmol m^?2 s^?1) maps generated by the EMEP Eulerian model (50 km × 50 km grid) that were parameterized for a generic crop based on wheat and NC‐S/NC‐R white clover. Many effects were found in areas where the AOT40 (crops) was below the critical level of 3 ppm h. In contrast, the majority of effects were detected in grid squares where POD3_gen (crops) were in the mid‐high range (>12 mmol m^?2). Overall, maps based on POD3_gen provided better fit to the effects data than those based on AOT40, with the POD3_gen model for clover fitting the clover effects data better than that for a generic crop.     

Patterns of parasitism in monarch butterflies during the breeding season in eastern North America

1. Migratory behaviour can result in reduced prevalence of pathogens in host populations. Two hypotheses have been proposed to explain this relationship: (i) ‘migratory escape’, where migrants benefit from escaping pathogen accumulation in contaminated environments; and (ii) ‘migratory culling’, where the selective removal of infected individuals occurs during migration. 2. In the host–parasite system between the monarch butterfly (Danaus plexippus Linn.) and its obligate protozoan parasite Ophryocystis elektroscirrha (OE), there is evidence to support both hypotheses, particularly during the monarchs' autumn migration. However, these processes can operate simultaneously and could vary throughout the monarchs' annual migratory cycle. Assessing the relative strength for each hypothesis has not previously been done. 3. To evaluate both hypotheses, parasite infection prevalence was examined in monarchs sampled in eastern North America during April–September, and stable isotopes (δ²H, δ¹³C) were used to estimate natal origin and infer migration distance. There was stronger support for the migratory escape hypothesis, wherein infection prevalence increased over the breeding season and was higher at southern latitudes, where the breeding season tends to be longer compared with northern latitudes. Little support was found for the migratory culling hypothesis, as infection prevalence was similar whether monarchs travelled shorter or longer distances. 4. These results suggest that migration allows individuals to escape parasites not only during the autumn, as shown in previous work, but during the monarchs' spring and summer movements when they recolonise the breeding range. These results imply a potential fitness advantage to monarchs that migrate further north to exploit parasite‐free habitats.     

Biochemical pathways analysis of microarray results: regulation of myogenesis in pigs

Background  

Combining microarray results and biological pathway information will add insight into biological processes. Pathway information is widely available in databases through the internet.     

Video Surveillance to Assess Highway Underpass Use by Elk in Arizona

ABSTRACT We used integrated video systems to compare wildlife use of 2 bridged wildlife underpasses (UPs) on a reconstructed highway in central Arizona, USA, from September 2002 to September 2005. Both UPs opened into the same riparian—meadow complex, were situated < 250 m apart, and had different below-span characteristics and dimensions. Our objectives were to compare Rocky Mountain elk (Cervus elaphus nelsoni) response to the UPs and test hypotheses that passage rate (crossing frequency/approach frequency), probability of use, and behavioral response at the 2 UPs did not differ. We related differences in elk use and response to UP design characteristics. Elk accounted for >90% of the animals we recorded on videotape, with 3,708 elk in 1,266 groups recorded at the 2 UPs. We used multiple logistic regression to predict the probability of UP use by elk, incorporating the combined effects of UP, season, and year. Season had the greatest effect on UP use, with the probability of UP use in summer (0.81) higher than in winter (0.58), when migratory elk less habituated to the UPs were present. A pattern of high summer (>0.80) and low winter passage rates (<0.40), regardless of UP, existed in all 3 years of video surveillance. Underpass also had an effect on the probability of elk crossing the UPs; the probability of use of the UP with 2 times the openness ratio, one-half the length for elk to traverse, and sloped earthen sides (0.75) was higher than the neighboring UP with concrete walls (0.66). Proportions of elk displaying behaviors indicative of resistance to crossing were dependent on UP and were higher at the UP with concrete walls. In all cases, elk preferred the more open UP with natural earthen sides. We believe that differences in UP length and the concrete walls contributed to differences in elk use and behavioral response. Continued video surveillance of these and other UPs will allow us to evaluate their efficacy in promoting wildlife permeability and safer highways.     

Effects of Traffic on Elk Use of Wildlife Underpasses in Arizona

ABSTRACT We used video surveillance at 4 wildlife underpasses along 27 km of Arizona State Route 260, USA, to monitor elk (Cervus elaphus) responses to traffic volume and traffic type during underpass use. Passage rates at the highest traffic category (>10–27 vehicles/min) were not lower than passage rates when no vehicles were present, whereas passage rates at low, intermittent traffic volume (>0–1 vehicles/min) were 15% lower. Once elk entered an underpass, semi-trailer trucks were 4 times more likely than passenger vehicles to cause flight behavior when traffic levels were intermittent versus when traffic was continuous. Overall, traffic volumes of >10–27 vehicles per minute did not decrease the effectiveness of wildlife underpasses as a means of mitigating elk population subdivision. However, if flight away from underpasses at intermediate traffic levels causes elk to cross the highway at other points and thereby increases the potential for costly elk-vehicle collisions, we recommend that managers consider measures to reduce traffic noise and visual stimuli, especially those caused by semi-trailer trucks.     

Major morphological effects of a regulatory gene: Pgm1-t in rainbow trout

We have investigated the morphological effects of a genetic locus, Pgm1- t, that affects the expression of a phosphoglucomutase locus (Pgm1) in liver of rainbow trout (Salmo gairdneri). We have previously shown that embryos with liver Pgm1 expression hatch earlier than those without liver Pgm1 expression. We predicted that this difference in developmental rate should cause a reduction in meristic counts in the more rapidly developing fish with liver Pgm1 expression. Eight meristic (countable) characters in nine full-sib groups segregating for the presence or absence of liver Pgm1 expression are in agreement with this prediction. In eight of the nine families, there is a significant difference in the multivariate distribution of the eight meristic counts between full sibs with and without liver Pgm1 expression. This separation in multivariate space is based on a tendency for lower meristic counts in fish with liver Pgm1 expression. The magnitude of these morphological differences is similar to that between two subspecies of cutthroat trout (Salmo clarki) that show substantial genetic divergence at structural loci encoding enzymes (Nei's D = 0.34). These data support the view that small changes in the developmental process caused by genetic differences at regulatory genes can have large effects on morphology.      

Interdependent MHC-DRB exon-plus-intron evolution in artiodactyls

Exon 2 sequences of an expressed MHC-DRB locus from sheep were examined for polymorphisms in both the antigen-binding regions and the adjacent intronic mixed simple tandem repeat. Twenty-one novel exon 2 Ovar-DRB alleles were identified. Short nucleotide motifs are extensively shared between certain exon 2 regions of Ovar-DRB alleles. The simple repeat variations, the number of different amino acids at usually polymorphic sites, and the number of silent substitutions were reduced in the intraspecies analyses of sheep DRB sequences, compared with those of cattle and goats. It was paradoxical that the abundance of different sheep alleles was similar to that of cattle and goats. This paradox may be explained by postulating a relatively small number of "ancient" alleles, with the present-day Ovar-DRB alleles being generated by reciprocal exchange of nucleotide motifs. At the antigen-binding sites, new combinations of amino acids were maintained in Ovar-DRB alleles by strong positive selection. In sheep--and less pronounced in goats and cattle--the DRB alleles can be divided into two groups. In one group, silent substitutions are increased when compared with the other. This suggests separate evolutionary pathways for certain groups of DRB alleles within a species. The simple repetitive sequences are also discussed with respect to the evolution of DRB alleles.      

Abscisic acid biosynthesis and catabolism and their regulation roles in fruit ripening

Abscisic acid (ABA) plays a series of significant physiology roles in higher plants including but not limited to promote bud and seed dormancy, accelerate foliage fall, induce stomatal closure, inhibit growth and enhance resistance. Recently, it has been revealed that ABA also has an important regulator role in the growth, development and ripening of fruit. In higher plants ABA is produced from an indirect pathway from the cleavage products of carotenoids. The accumulation of endogenous ABA levels in plants is a dynamic balance controlled by the processes of biosynthesis and catabolism, through the regulation of key ABA biosynthetic gene and enzyme activities. It has been hypothesized that ABA levels could be part of the signal that trigger fruit ripening, and that ABA may play an important role in the regulation of ripening and senescence of both non-climacteric and climacteric fruit. The expensive costs of natural ABA and labile active ABA for its chemical synthesis limit its application in scientific research and agricultural production. These findings that ABA has various of important roles in the regulation of growth and development, quality formation, coloring and softening, ripening and senescence of fruit, are providing opportunities and challenges for Horticultural Science. This is to elucidate the specific mechanism of response and biosynthesis, signal transduction, and receptor recognition of ABA in fruit, employing comprehensive research methods, such as molecular biology, plant physiology and molecular genetics. Further and more in-depth research about ABA has a great, realistic significance for knowing the mechanisms behind the process of fruit ripening.